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Author SHA1 Message Date
Léo Le Bouter 427d606901
gnu: jasper: Update to 2.0.25 [fixes CVE-2021-26926]. 
* gnu/packages/image.scm (jasper): Update to 2.0.25.
 2021-03-03 21:23:40 +01:00
Léo Le Bouter 3aacc9f1da
gnu: python-pillow: Update to 8.1.1 [security fixes]. 
* gnu/packages/python-xyz.scm (python-pillow): Update to 8.1.1.
 2021-03-03 21:01:29 +01:00
Leo Famulari 1e1549a7a7
gnu: certbot, python-acme: Update to 1.12.0. 
* gnu/packages/tls.scm (python-acme): Update to 1.12.0.
(certbot): Update to 1.12.0.
[arguments]: Replace the 'build-documentation' phase.
 2021-03-03 12:08:26 -05:00
Julien Lepiller 0bd58ae7ff
gnu: ocaml-4.07: Bootstrap. 
* gnu/packages/ocaml.scm (ocaml-4.07): Implement bootstrap via camlboot.
 2021-03-03 17:04:16 +01:00
Julien Lepiller 63df962225
gnu: Add camlboot. 
* gnu/packages/ocaml.scm (camlboot): New variable.
 2021-03-03 17:02:23 +01:00
Nicolas Goaziou 7309aab0d4
gnu: emacs-posframe: Update to 0.8.7. 
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 0.8.7.
 2021-03-03 14:37:41 +01:00
Andrew Tropin 63bee8f0ad
services: shepherd: Make 'assert-valid-graph' public. 
* gnu/services/shepherd.scm (assert-valid-graph): Make public.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-03 14:19:26 +01:00
Ludovic Courtès 9fc4e94986
gexp: #:references-graphs refers to non-native derivations. 
Fixes a regression introduced in
c6d6aee6659acb293eb33f498fdac3b47a19a48, where #:reference-graphs would
end up referring to native inputs.

This would notably break the compilation of systems using a childhurd,
because they would attempt to build the 'hurd' package natively.

* guix/gexp.scm (lower-reference-graphs)[tuple->gexp-input]: Honor TARGET.
* tests/gexp.scm ("gexp->derivation #:references-graphs cross-compilation"):
New test.
 2021-03-03 14:19:25 +01:00
Pierre Neidhardt d9f1752c55
gnu: sbcl-slynk: Update to 20210224. 
* gnu/packages/lisp-xyz.scm (sbcl-slynk): Update to 20210224.
 2021-03-03 10:04:49 +01:00
Pierre Neidhardt 5e4c332617
gnu: emacs-sly: Update to 20210224. 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20210224.
 2021-03-03 10:04:49 +01:00
cage 9e76de0460
gnu: Add cl-tooter. 
* gnu/packages/lisp-xyz.scm (cl-tooter, ecl-tooter, sbcl-tooter): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-03 09:46:39 +01:00
Tim Howes dcee10506c
gnu: infernal: Update to 1.1.4. 
* gnu/packages/bioinformatics.scm (infernal): Update to 1.1.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-03 10:11:51 +02:00
Tim Howes 9f4ffc249f
gnu: hmmer: Update to 3.3.2. 
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.3.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-03 10:11:51 +02:00
Michael Rohleder 5ca7bae767
gnu: bpytop: Update to 1.0.63. 
* gnu/packages/admin.scm (bpytop): Update to 1.0.63.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-03 10:11:49 +02:00
André Alexandre Gomes db22d9364e
gnu: Add cl-html-diff. 
* gnu/packages/lisp-xyz.scm (cl-html-diff, ecl-cl-html-diff,
sbcl-cl-html-diff): New variables.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
 2021-03-03 08:48:54 +01:00
André Alexandre Gomes 073ae1b9c4
gnu: Add cl-difflib. 
* gnu/packages/lisp-xyz.scm (cl-difflib, ecl-cl-difflib, sbcl-cl-difflib): New variables.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
 2021-03-03 08:46:53 +01:00
Pierre Neidhardt 62418f3da7
gnu: sbcl-file-attributes: Update to 20210302. 
* gnu/packages/lisp-xyz.scm (sbcl-file-attributes): Update to 20210302.
 2021-03-03 08:41:14 +01:00
Léo Le Bouter 759a526f5f
gnu: openssh: Update to 8.5p1. 
* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Also unregister it.
* gnu/packages/ssh.scm (openssh): Update to 8.5p1.
 2021-03-03 06:39:37 +01:00
Léo Le Bouter 4bb9bb78c2
gnu: osip: Update to 5.2.0. 
* gnu/packages/telephony.scm (osip): Update to 5.2.0.
 2021-03-03 00:06:33 +01:00
Ludovic Courtès 24b2b5f99a
openpgp: Remove now unnecessary procedure. 
* guix/openpgp.scm (hash-algorithm-name): Remove.  This procedure has
been provided by Guile-Gcrypt since 0.3.0.
 2021-03-02 23:12:37 +01:00
Ludovic Courtès 8784b52a9a
gnu: usync: Patch shebang. 
* gnu/packages/sync.scm (usync)[propagated-inputs]: Move SCSH to...
[inputs]: ... here.  New field.
[arguments]: Add #:phases.
 2021-03-02 23:12:36 +01:00
Stefan Reichör 061256da09
gnu: Add usync. 
* gnu/packages/sync.scm (usync): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-02 23:12:36 +01:00
Ludovic Courtès 97f8b22f6d
gnu: ocaml-llvm: Move to (gnu packages llvm). 
Commit 8f710cc598 introduced a circular
dependency between ocaml.scm and llvm.scm by referring to 'llvm' from
the top level of ocaml.scm.  This fixes it.

* gnu/packages/ocaml.scm (make-ocaml-llvm, ocaml-llvm)
(ocaml-llvm-9, ocaml-llvm-10, ocaml-llvm-11): Move to...
* gnu/packages/llvm.scm: ... here.
 2021-03-02 23:12:36 +01:00
Stefan Reichör 22475a65d8
gnu: stgit: Update to 1.0. 
* gnu/packages/version-control.scm (stgit): Update to 1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-02 23:12:36 +01:00
Ellis Kenyő 3043974c36
gnu: Add python-jinja2-cli. 
* gnu/packages/python-xyz.scm (python-jinja2-cli): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-02 23:12:36 +01:00
Greg Hogan be22c87d2d
gnu: Add pcg-cpp. 
* gnu/packages/cpp.scm (pcg-cpp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-02 23:12:36 +01:00
Lars-Dominik Braun 2075b83b2d
gnu: r-haven: Unvendor readstat. 
* gnu/packages/cran.scm (r-haven) [snippet]: Remove bundled readstat.
[arguments]: Patch Makevars to use system readstat.
[inputs]: Replace zlib with readstat.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-02 23:12:35 +01:00
Lars-Dominik Braun 5ca1c7d1ce
gnu: Add readstat. 
* gnu/packages/statistics.scm (readstat): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-02 23:12:35 +01:00
Leo Famulari 3905580180
gnu: Python 2: Fix CVE-2021-3177. 
* gnu/packages/patches/python-2.7-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[replacement]: New field.
(python-2.7/fixed): New variable.
 2021-03-02 16:55:06 -05:00
Tobias Geerinckx-Rice c48c69194f
gnu: python-matplotlib: Fix running under Wayland with GTK3. 
* gnu/packages/python-xyz.scm (python-matplotlib)[source]: Add patch.
* gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-03-02 18:31:42 +01:00
Tobias Geerinckx-Rice 8c5cafab49
gnu: pitivi: Update to 2021.01.0. 
* gnu/packages/video.scm (pitivi): Update to 2021.01.0.
 2021-03-02 18:31:42 +01:00
Tobias Geerinckx-Rice e98c67b873
gnu: pitivi: Build from git source. 
* gnu/packages/video.scm (pitivi)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2021-03-02 18:31:42 +01:00
Nicolas Goaziou 3ce7c1f3c3
gnu: bat: Update to 0.18.0. 
* gnu/packages/rust-apps.scm (bat): Update to 0.18.0.
 2021-03-02 17:46:05 +01:00
Nicolas Goaziou e321ddd9b3
gnu: Add rust-bat-0.17. 
* gnu/packages/crates-io.scm (rust-bat-0.17): New variable.
* gnu/packages/shells.scm (rust-nu-plugin-textview-0.27)[arguments]: Use
rust-bat-0.17 instead of bat as Cargo input.
 2021-03-02 17:46:05 +01:00
Nicolas Goaziou 83fdec306e
gnu: Add rust-bugreport-0.3. 
* gnu/packages/crates-io.scm (rust-bugreport-0.3): New variable.
 2021-03-02 17:46:04 +01:00
Nicolas Goaziou a94fc2bdfc
gnu: Add rust-snailquote-0.3. 
* gnu/packages/crates-io.scm (rust-snailquote-0.3): New variable.
 2021-03-02 17:46:04 +01:00
Nicolas Goaziou 3c0e692322
gnu: Add rust-unicode-categories-0.1. 
* gnu/packages/crates-io.scm (rust-unicode-categories-0.1): New variable.
 2021-03-02 17:46:04 +01:00
Nicolas Goaziou 0b30061666
gnu: Add rust-sys-info-0.7. 
* gnu/packages/crates-io.scm (rust-sys-info-0.7): New variable.
 2021-03-02 17:46:03 +01:00
Nicolas Goaziou e809925bc3
gnu: Add rust-clircle-0.3. 
* gnu/packages/crates-io.scm (rust-clircle-0.3): New variable.
 2021-03-02 17:46:03 +01:00
Nicolas Goaziou aac12366d0
gnu: rust-syntect-4: Update to 4.5.0. 
* gnu/packages/crates-io.scm (rust-syntect-4): Update to 4.5.0.
 2021-03-02 17:46:03 +01:00
Nicolas Goaziou 4176544adb
gnu: rust-assert-cmd-1: Update to 1.0.3. 
* gnu/packages/crates-io.scm (rust-assert-cmd-1): Update to 1.0.3.
[arguments]: Add rust-bstr Cargo input.
 2021-03-02 17:46:02 +01:00
Nicolas Goaziou b9ac9757e5
gnu: rust-bstr-0.2: Update to 0.2.15. 
* gnu/packages/crates-io.scm (rust-bstr-0.2): Update to 0.2.15.
 2021-03-02 17:46:02 +01:00
Nicolas Goaziou 3af5497c6e
gnu: rust-predicates-1: Update to 1.0.7. 
* gnu/packages/crates-io.scm (rust-predicates-1): Update to 1.0.7.
 2021-03-02 17:46:02 +01:00
Ricardo Wurmus f21c711a0f
gnu: kallisto: Update to 0.46.2. 
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.46.2.
[source]: Remove bundled htslib sources.
 2021-03-02 17:06:58 +01:00
Ricardo Wurmus cc39e9dbdc
gnu: kallisto: Use older htslib. 
* gnu/packages/bioinformatics.scm (kallisto)[inputs]: Use htslib-1.9 instead
of the latest.
 2021-03-02 17:06:58 +01:00
Tobias Geerinckx-Rice 467f7919e2
gnu: liburcu: Update to 0.12.2. 
* gnu/packages/datastructures.scm (liburcu): Update to 0.12.2.
 2021-03-02 16:37:37 +01:00
Xinglu Chen 05dc279bbe
gnu: xwallpaper: Update to 0.6.6. 
* gnu/packages/xdisorg.scm (xwallpaper): Update to 0.6.6.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-03-02 16:37:37 +01:00
Xinglu Chen 7bcbf35efa
gnu: feh: Update to 3.6.3. 
* gnu/packages/image-viewers.scm (feh): Update to 3.6.3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-03-02 16:37:36 +01:00
Simon South 673ab1cdb4
gnu: knot-resolver: Update to 5.3.0. 
* gnu/packages/dns.scm (knot-resolver): Update to 5.3.0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-03-02 16:05:29 +01:00
Nicolas Goaziou 2892e1a2a8
gnu: bzflag: Update to 2.4.22. 
* gnu/packages/games.scm (bzflag): Update to 2.4.22.
 2021-03-02 14:09:32 +01:00