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Author SHA1 Message Date
methuselah-0 43c55856c8
gnu: Add galera. 
* gnu/packages/databases.scm (galera): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-04-08 23:28:01 +02:00
Ludovic Courtès 06eb21856f
build-system/qt: Wrappers set 'QTWEBENGINEPROCESS_PATH' if needed. 
Suggested by Maxim Cournoyer <maxim.cournoyer@gmail.com>.

* guix/build/qt-build-system.scm (variables-for-wrapping): Add
"QTWEBENGINEPROCESS_PATH".
 2021-04-08 23:27:55 +02:00
Ludovic Courtès c5fd1b0bd3
build-system/qt: Wrappers only include relevant directories to XDG_DATA_DIRS. 
Fixes <https://bugs.gnu.org/47569>.

Previously the wrapper's XDG_DATA_DIRS would contain any input that had
a /share sub-directory, which is usually all build-time inputs.

* guix/build/qt-build-system.scm (variables-for-wrapping)[collect-sub-dirs]:
Add 'selectors' parameter and honor it.  Change caller to handle
selectors.  Add selectors for /share.
 2021-04-08 23:27:41 +02:00
Ludovic Courtès eb6ac483a5
gnu-maintenance: 'sourceforge' updater reuses the same connection. 
* guix/gnu-maintenance.scm (latest-sourceforge-release): Call
'open-socket-for-uri' upfront.  Pass #:port and #:keep-alive? to
'http-head'.  Wrap body in 'dynamic-wind' and call 'close-port' upon
exit.
 2021-04-08 23:27:41 +02:00
Nicolas Goaziou 91fe9dd08e
gnu: emacs-emms: Update to 7.0. 
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 7.0.
 2021-04-08 22:16:05 +02:00
Christopher Baines 97744de970
gnu: guix-build-coordinator: Update to 0-22.44d0006. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-22.44d0006.
 2021-04-08 20:49:56 +01:00
Leo Famulari 5bb5b4a7f3
gnu: linux-libre 4.4: Update to 4.4.265. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.265.
(linux-libre-4.4-pristine-source): Update hash.
 2021-04-08 15:12:05 -04:00
Leo Famulari 8a7ef6dc1f
gnu: linux-libre 4.9: Update to 4.9.265. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.265.
(linux-libre-4.9-pristine-source): Update hash.
 2021-04-08 15:12:05 -04:00
Leo Famulari e60c7acf5a
gnu: linux-libre 4.14: Update to 4.14.229. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.229.
(linux-libre-4.14-pristine-source): Update hash.
 2021-04-08 15:12:05 -04:00
Leo Famulari eef44c8732
gnu: linux-libre 4.19: Update to 4.19.185. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.185.
(linux-libre-4.19-pristine-source): Update hash.
 2021-04-08 15:12:05 -04:00
Leo Famulari c44dd82a66
gnu: linux-libre 5.4: Update to 5.4.110. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.110.
(linux-libre-5.4-pristine-source): Update hash.
 2021-04-08 15:12:05 -04:00
Leo Famulari 1cdf95c14f
gnu: linux-libre 5.10: Update to 5.10.28. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.28.
(linux-libre-5.10-pristine-source): Update hash.
 2021-04-08 15:12:04 -04:00
Leo Famulari adb4c05aa6
gnu: linux-libre: Update to 5.11.12. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.12.
(linux-libre-5.11-pristine-source): Update hash.
 2021-04-08 15:12:04 -04:00
Maxim Cournoyer bdc96f6e0e
system: vm: Set a larger value for the msize option of the 9p file system. 
Fixes <https://issues.guix.gnu.org/47225>.

* gnu/system/vm.scm (%default-msize-value): New variable.
(%linux-vm-file-systems): Use it as the value of the msize option.
(mapping->file-system): Likewise.

Reported-by: Leo Famulari <leo@famulari.name>
 2021-04-08 15:12:01 -04:00
Ricardo Wurmus c762df5478
etc/committer: Disable diff colors. 
Reported by: morgansmith on IRC.

* etc/committer.scm.in (diff-info): Invoke "git diff" with "--no-color".
 2021-04-08 17:12:06 +02:00
Mathieu Othacehe 2afc79b51d
ci: Introduce new subsets. 
Introduce 'images, 'system-tests and 'tarball subsets.

* gnu/ci.scm (cuirass-jobs): Break the 'all subset into smaller subsets.
 2021-04-08 15:24:03 +02:00
Mathieu Othacehe 14ada96451
ci: Remove the job period argument. 
Cuirass now deals with periodicity directly on specifications.

* gnu/ci.scm (derivation->job): Remove the period argument.
(image-jobs, system-test-jobs, tarball-jobs): Adapt them.
 2021-04-08 15:24:03 +02:00
Ricardo Wurmus 5f0c3535aa
gnu: r-genomicfeatures: Update to 1.42.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.3.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus e0147aa46f
gnu: r-gviz: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.34.1.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 14a4c30828
gnu: r-universalmotif: Update to 1.8.4. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.4.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 8a7933f37e
gnu: r-rsubread: Update to 2.4.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.3.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 215b0ced02
gnu: r-chippeakanno: Update to 3.24.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.2.
[propagated-inputs]: Add r-dplyr.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 55185f9b3f
gnu: r-diffbind: Update to 3.0.15. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.15.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 9d2ca98213
gnu: r-genomeinfodb: Update to 1.26.6. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.6.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus fb73d7d10d
gnu: r-delayedarray: Update to 0.16.3. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3.
 2021-04-08 13:28:23 +02:00
Paul Garlick 71ca8fd40b
gnu: Add texlive-mweights. 
* gnu/packages/tex.scm: New variable.
 2021-04-08 11:18:06 +01:00
Morgan Smith bb4f47a7f6
gnu: axoloti-runtime: Simplify build. 
* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Remove
unnecessary environment variable assignments in custom 'build phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-08 11:00:05 +03:00
Morgan Smith 5c9954490c
gnu: gcc-arm-none-eabi: Fix C++ header location. 
Previously the C++ headers where installed in the include folder, overwriting
some C headers.

* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)
[native-search-paths]: Add C++ header locations.
(gcc-arm-none-eabi-7-2018-q2-update)[native-search-paths]: Add C++
header locations.
(make-libstdc++-arm-none-eabi)[arguments]: Change C++ header install
location to include/c++.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-08 10:58:54 +03:00
Ricardo Wurmus 83991a34d5
etc/committer: Recompute hunks before processing changes. 
* etc/committer.scm.in (main): Re-evaluate diff-info after processing
insertions.
 2021-04-08 03:10:14 +02:00
Ricardo Wurmus 43fb6b765d
etc/committer: Record minimal context for hunks to avoid problems. 
With zero context new definitions would be applied to the wrong location in
the file.  More context lines lead to larger hunks, though, so we use just one
line of context.

* etc/committer.scm.in (diff-info): Invoke "git diff" with one line of
context.
[info]: Merge line break and first line.
(lines-to-first-change): New procedure.
(old-sexp, new-sexp): Use it.
 2021-04-08 03:10:14 +02:00
Ricardo Wurmus 56270c1275
etc/committer: Define delay duration as a variable. 
* etc/committer.scm.in (%delay): New variable.
(main): Use it.
 2021-04-08 03:10:14 +02:00
Ricardo Wurmus c8c3afe848
etc/committer: Handle package additions. 
* etc/committer.scm.in (<hunk>)[diff]: Rename this field...
[diff-lines]: ...to this.
[definition?]: New field.
(hunk->patch): Join diff lines.
(diff-info): Do not join diff lines; record whether a hunk is a new
definition.
(commit-message): Rename this procedure...
(change-commit-message): ...to this.
(add-commit-message): New procedure.
(main): Handle new package definitions before changes.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus e1a38cbad8
gnu: r-sn: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-sn): Update to 2.0.0.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 2e36f4a1c4
gnu: r-sfsmisc: Update to 1.1-10. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-10.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 9493b3e9a7
gnu: r-e1071: Update to 1.7-6. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-6.
[propagated-inputs]: Add r-proxy.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus d98cecdd07
gnu: r-xml: Update to 3.99-0.6. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.6.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus d6fd6908c2
gnu: r-rsqlite: Update to 2.2.5. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.5.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus e2851d10db
gnu: r-catools: Update to 1.18.2. 
* gnu/packages/statistics.scm (r-catools): Update to 1.18.2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 63c5888c43
gnu: r-dbplyr: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.1.1.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 55378aa21d
gnu: r-survival: Update to 3.2-10. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-10.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 971a997f75
gnu: r-stars: Update to 0.5-2. 
* gnu/packages/cran.scm (r-stars): Update to 0.5-2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 0ec1b08a52
gnu: r-lwgeom: Update to 0.2-6. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-6.
[inputs]: Add zlib.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 5a2602032f
gnu: r-ragg: Update to 1.1.2. 
* gnu/packages/cran.scm (r-ragg): Update to 1.1.2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus ded1599829
gnu: r-textshaping: Update to 0.3.3. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.3.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 2224e02779
gnu: r-bbotk: Update to 0.3.2. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus 6ec08e19b3
gnu: r-mlr3learners: Update to 0.4.5. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.4.5.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus ae3df456bb
gnu: r-mlr3misc: Update to 0.8.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.8.0.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus b83b2a3a4b
gnu: r-phangorn: Update to 2.6.3. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.6.3.
[native-inputs]: Add r-knitr.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus 6e93ab0666
gnu: r-qtl: Update to 1.48-1. 
* gnu/packages/cran.scm (r-qtl): Update to 1.48-1.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus 3ba3fb71fb
gnu: r-altmeta: Update to 3.3. 
* gnu/packages/cran.scm (r-altmeta): Update to 3.3.
 2021-04-08 03:10:12 +02:00