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Author SHA1 Message Date
Felix Gruber c8bcef2598
gnu: sameboy: Update to 0.14.4. 
* gnu/packages/emulators.scm (sameboy): Update to 0.14.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-08-01 12:58:03 +02:00
Ludovic Courtès b2a5a180cf
gnu: glib-networking: Update to 2.68.1. 
* gnu/packages/gnome.scm (glib-networking): Update to 2.68.1.
 2021-07-31 23:46:17 +02:00
Ludovic Courtès 0a1a1ad213
gnu: glib-networking: Skip failing test. 
* gnu/packages/patches/glib-networking-gnutls-binding.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (glib-networking)[source]: Use it.
 2021-07-31 23:42:21 +02:00
Ludovic Courtès 9fb7269059
gnu: icedtea@1.13.13: Add 'file-name' field to the origins. 
* gnu/packages/java.scm (icedtea-6)[native-inputs]: Add 'file-name'
field to all the origins.
 2021-07-31 15:51:39 +02:00
Ludovic Courtès 69dde4e354
gnu: gnutls: Patch the Guile bindings for EINTR/EAGAIN handling. 
* gnu/packages/patches/gnutls-guile-eintr-eagain.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[source]: Use it.
 2021-07-31 15:44:58 +02:00
John Kehayias 2c0013916e
gnu: mesa: Update to 21.1.6. 
* gnu/packages/gl.scm (mesa): Update to 21.1.6.
* gnu/packages/patches/mesa-skip-tests.patch: Remove cache_test.c as it is no
longer needed (test passes).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 12:08:32 +02:00
Kaelyn Takata 554e09254c
gnu: libdrm: Update to 2.4.107. 
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.107, and change
libpciaccess to a propagated input as the pkg-config for libdrm_intel now
includes it in the libs.
[arguments]: Add conditional testing support to the replacement for the
standard check phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 11:30:41 +02:00
Marius Bakke f8458a2282
build-system/python: Handle missing metadata on Python 2. 
* gnu/packages/aux-files/python/sanity-check.py: Catch the less specific
EnvironmentError rather than FileNotFoundError as the latter is Python 3
only.
 2021-07-30 15:54:31 +02:00
Marius Bakke b029be2ee0
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
 2021-07-29 22:34:57 +02:00
Ricardo Wurmus ffb381856d
gnu: r-xcms: Update to 3.14.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
 2021-07-29 20:20:18 +02:00
Ricardo Wurmus e06beb503c
gnu: r-reportingtools: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
 2021-07-29 20:20:15 +02:00
Tobias Geerinckx-Rice c022c1e5b2
gnu: php: Update to 7.4.22 [security fixes]. 
* gnu/packages/php.scm (php): Update to 7.4.22.
 2021-07-29 19:57:57 +02:00
Christopher Lemmer Webber 45235e67e4
system: Add (gnu system setuid). 
I flubbed and somehow when including the patch series, this got dropped.
Oops... should fix things again.

* gnu/system/setuid.scm: New file.
 2021-07-29 13:09:48 -04:00
Brice Waegeneire a85ec0bf69
services: Migrate to <setuid-program>. 
* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs):
  Return setuid-programs.
* gnu/services/desktop.scm (enlightenment-setuid-programs): Return
 setuid-programs.
 (%desktop-services)[mount-setuid-helpers]: Use setuid-programs.
* gnu/services/docker.scm (singularity-setuid-programs): Return
 setuid-programs.
* gnu/services/xorg.scm(screen-locker-setuid-programs): Return
 setuid-programs.
* gnu/system.scm (%setuid-programs): Return setuid-programs.
* doc/guix.texi (Setuid Programs, operating-system Reference): Replace
  'list of G-expressions' with 'list of <setuid-program>'.
 2021-07-29 11:32:48 -04:00
Chris Lemmer-Webber a7ac19851b
services: setuid: More configurable setuid support. 
New record <setuid-program> with fields for setting the specific user
and group, as well as specifically selecting the setuid and setgid bits,
for a program within the setuid-program-service.

* gnu/services.scm (setuid-program-file-like-deprecated): New function.
  (setuid-program-service-type): Make use of
  setuid-program->activation-gexp.  Adjust the extend property to handle
  <setuid-program>.
* gnu/build/activation.scm (activate-setuid-programs): Update to expect a
  <setuid-record> list for each program entry.
* gnu/system.scm: (operating-system-setuid-programs): Renamed to
  %operating-system-setuid-programs and replace it with new procedure.
  (operating-system-default-essential-services,
  hurd-default-essential-services): Replace
  operating-system-setuid-programs with
  %operating-system-setuid-programs.
* gnu/system/setuid.scm: New file.
* doc/guix.texi (Setuid Programs): Document <setuid-program>.

Co-authored-by: Brice Waegeneire <brice@waegenei.re>
 2021-07-29 11:32:08 -04:00
Ricardo Wurmus 5a1ce6cf70
gnu: r-matrixstats: Update to 0.60.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 2c625a4969
gnu: r-e1071: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 234549dbfe
gnu: r-protolite: Update to 2.1.1. 
* gnu/packages/cran.scm (r-protolite): Update to 2.1.1.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus d9a5c8b7e3
gnu: r-lwgeom: Update to 0.2-7. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-7.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 03260ba1a4
gnu: r-mgsub: Update to 1.7.3. 
* gnu/packages/cran.scm (r-mgsub): Update to 1.7.3.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 1d2b6230da
gnu: r-matrixcalc: Update to 1.0-5. 
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-5.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus a648eaa915
gnu: r-leiden: Update to 0.3.9. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.9.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 4b322909d4
gnu: r-dalex: Update to 2.3.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.3.0.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 75318afcdf
gnu: r-sf: Update to 1.0-2. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-2.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus d30f6cd6cc
gnu: r-summarytools: Update to 1.0.0. 
* gnu/packages/cran.scm (r-summarytools): Update to 1.0.0.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 1cc30d1eb6
gnu: r-ggeffects: Update to 1.1.1. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.1.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 07726b8575
gnu: r-pillar: Update to 1.6.2. 
* gnu/packages/cran.scm (r-pillar): Update to 1.6.2.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 5eac5eb748
gnu: r-vioplot: Update to 0.3.7. 
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.7.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 244fda54d3
gnu: r-stringdist: Update to 0.9.7. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.7.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus b1b605fddb
gnu: r-broom: Update to 0.7.9. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.9.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus fe6ad60e36
gnu: r-rpostgresql: Update to 0.7. 
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 74abd1ebe9
gnu: r-arrow: Update to 5.0.0. 
* gnu/packages/cran.scm (r-arrow): Update to 5.0.0.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus ef61998524
gnu: apache-arrow: Update to 5.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 5.0.0.
 2021-07-29 17:11:08 +02:00
Marius Bakke bc55f3091b
gnu: util-linux: Explicitly depend on 'file'. 
...instead of using the variant that happens to be in %FINAL-INPUTS.

* gnu/packages/linux.scm (util-linux)[inputs]: Add FILE.  While at it, remove
labels.
[native-inputs]: Remove labels.
 2021-07-29 14:10:13 +02:00
Marius Bakke cdd3141f19
gnu: util-linux: Remove cross-compilation workaround. 
* gnu/packages/linux.scm (util-linux)[arguments]: Look for /etc/services in
both NATIVE-INPUTS and INPUTS, instead of by input label.  Remove unused variable.
[inputs]: When cross-compiling, don't add NET-BASE.
 2021-07-29 14:10:13 +02:00
Marius Bakke ec0a244417
gnu: util-linux: Update to 2.37.1. 
This fixes an infinite loop in 'mkswap'; see
<https://bugzilla.redhat.com/show_bug.cgi?id=1971877>.

* gnu/packages/linux.scm (util-linux): Update to 2.37.1.
 2021-07-29 14:10:13 +02:00
Ricardo Wurmus 8437710bbf
gnu: r-with-tests: Add missing TeX Live packages. 
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Add
texlive-grfext and texlive-latex-l3backend to the texlive union.
 2021-07-29 13:51:01 +02:00
Ricardo Wurmus ed84f6f869
gnu: Add texlive-grfext. 
* gnu/packages/tex.scm (texlive-grfext): New variable.
 2021-07-29 13:51:01 +02:00
Efraim Flashner b95fb85f59
gnu: vim-guix-vim: Update to 0.3.0. 
* gnu/packages/vim.scm (vim-guix-vim): Update to 0.3.0.
[source]: Update source uri.
 2021-07-29 14:46:41 +03:00
Efraim Flashner 4707ab2fc0
gnu: julia-weakrefstrings: Update to 1.1.0. 
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): Update to 1.1.0.
 2021-07-29 14:43:43 +03:00
Efraim Flashner 6bf32d1314
gnu: julia-typedtables: Update to 1.4.0. 
* gnu/packages/julia-xyz.scm (julia-typedtables): Update to 1.4.0.
 2021-07-29 14:43:43 +03:00
Efraim Flashner f5ec4cd9ac
gnu: julia-staticarrays: Update to 1.2.9. 
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.9.
 2021-07-29 14:43:43 +03:00
Efraim Flashner ace03e017c
gnu: julia-static: Update to 0.3.0. 
* gnu/packages/julia-xyz.scm (julia-static): Update to 0.3.0.
 2021-07-29 14:43:43 +03:00
Efraim Flashner bf796e1b8e
gnu: julia-sortingalgorithms: Update to 1.0.1. 
* gnu/packages/julia-xyz.scm (julia-sortingalgorithms): Update to 1.0.1.
 2021-07-29 14:43:42 +03:00
Efraim Flashner b9264f2870
gnu: julia-simpletraits: Update to 0.9.4. 
* gnu/packages/julia-xyz.scm (julia-simpletraits): Update to 0.9.4.
 2021-07-29 14:43:42 +03:00
Efraim Flashner 831ce9b94e
gnu: julia-recipespipeline: Update to 0.3.4. 
* gnu/packages/julia-xyz.scm (julia-recipespipeline): Update to 0.3.4.
 2021-07-29 14:43:42 +03:00
Efraim Flashner 230d77d958
gnu: julia-plotutils: Update to 1.0.11. 
* gnu/packages/julia-xyz.scm (julia-plotutils): Update to 1.0.11.
 2021-07-29 14:43:42 +03:00
Efraim Flashner c2305209c2
gnu: julia-offsetarrays: Update to 1.10.3. 
* gnu/packages/julia-xyz.scm (julia-offsetarrays): Update to 1.10.3.
 2021-07-29 14:43:42 +03:00
Efraim Flashner f70db25982
gnu: julia-mutablearithmetics: Update to 0.2.20. 
* gnu/packages/julia-xyz.scm (julia-mutablearithmetics): Update to 0.2.20.
 2021-07-29 14:43:42 +03:00
Efraim Flashner 3127f3731a
gnu: julia-matrixfactorizations: Update to 0.8.4. 
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): Update to 0.8.4.
 2021-07-29 14:43:42 +03:00