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jgart via Guix-patches via 6b29c3c735
gnu: python2-jedi: Remove package. 
* gnu/packages/python-xyz.scm (python2-jedi): Delete variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:10:34 +01:00
jgart via Guix-patches via c56e9033f5
gnu: python-parso: Update to 0.8.2. 
* gnu/packages/python-xyz.scm (python-parso): Update to 0.8.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:10:18 +01:00
raingloom d9956e9383
gnu: yggdrasil: Update to 0.4.1. 
* gnu/packages/networking.scm (yggdrasil): Update to 0.4.1.
* gnu/packages/patches/yggdrasil-extra-config.patch: Update for new version.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom f3b2af2147
gnu: yggdrasil: Update to 0.4.0. 
* gnu/packages/patches/yggdrasil-extra-config.patch: Update patch.
* gnu/packages/networking.scm (yggdrasil): Update to 0.4.0.
[arguments]: Also install genkeys.
[propagated-inputs]: Remove go-github-com-cheggaaa-pb; add go-golang-org-x-sys,
go-github-com-mattn-go-runewidth, go-github-com-mattn-go-isatty,
go-github-com-fatih-color, go-github-com-cheggaaa-pb-v3,
go-github-com-vividcortex-ewma, and go-github-com-arceliar-ironwood.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom dee3e337b6
gnu: Add go-github-com-arceliar-ironwood. 
* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom 7e4b418733
gnu: Rename go-github-com-cheggaaa-pb to go-github-com-cheggaaa-pb-v3. 
* gnu/packages/golang.scm (go-github-com-cheggaaa-pb): Rename this variable...
(go-github-com-cheggaaa-pb-v3): ...to this variable.
(go-github-com-cheggaaa-pb): New variable for deprecated package.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom b7e774a828
gnu: go-github-com-cheggaaa-pb: Update to 3.0.8. 
* gnu/packages/golang.scm (go-github-com-cheggaaa-pb): Update to 3.0.8.
[arguments]: Disable tests; update import path.
[native-inputs]: Move go-github-com-mattn-go-isatty from here...
[propagated-inputs]: ...to here; add go-github-com-vividcortex-ewma and
go-github-com-rivo-uniseg.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom 660062a65b
gnu: Add go-github-com-mattn-go-runewidth. 
* gnu/packages/golang.scm (go-github-com-mattn-go-runewidth): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom f3861469b6
gnu: Add go-github-com-rivo-uniseg. 
* gnu/packages/golang.scm (go-github-com-rivo-uniseg): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom b3a9d079b8
gnu: Add go-github-com-vividcortex-ewma. 
* gnu/packages/golang.scm (go-github-com-vividcortex-ewma): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
ZmnSCPxj via Guix-patches via 5ca0042116
gnu: Add python-mrkd. 
* gnu/packages/python-xyz.scm (python-mrkd): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 16:40:49 +01:00
cage 0a9edd23ca
gnu: telescope: Update to 0.6.1. 
* gnu/packages/web-browsers.scm (telescope): Update to 0.6.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 16:36:39 +01:00
cage 8e7e839c98
gnu: cl-unix-opts: Update to 0.1.7-1.0e61f34. 
* gnu/packages/lisp-xyz.scm (sbcl-unix-opts): Update to 0.1.7-1.0e61f34.
  [source]: Fetch using commit instead of old tag.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-01 13:26:29 +01:00
cage 0da9ae01a8
gnu: cl-croatoan: Update to 0.0.1-4.cf87513. 
* gnu/packages/lisp-xyz.scm (sbcl-croatoan): Update to 0.0.1-4.cf87513.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-01 13:16:01 +01:00
jgart dc438820c3
gnu: Add julia-millboard. 
* gnu/packages/julia-xyz.scm (julia-millboard): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 14:08:46 +02:00
jgart f303eaa31b
gnu: Add julia-jive. 
* gnu/packages/julia-xyz.scm (julia-jive): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 14:08:46 +02:00
jgart 2eca48e310
gnu: Add julia-softglobalscope. 
* gnu/packages/julay-xyz.scm (julia-softglobalscope): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 14:08:46 +02:00
Giacomo Leidi ce6ea46d40
gnu: Add dynaconf. 
* gnu/packages/python-xyz.scm (dynaconf): New variable.
* gnu/packages/patches/dynaconf-Unvendor-dependencies.patch: New file.
* local.mk (dist_patch_DATA): Register it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 13:58:07 +02:00
Giacomo Leidi f8b1215874
gnu: Add python-dotenv-0.13.0. 
* gnu/packages/python-xyz.scm (python-dotenv-0.13.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 13:58:04 +02:00
Efraim Flashner 1e8ad167f6
gnu: python-dotenv: Run test suite. 
* gnu/packages/python-xyz.scm (python-dotenv)[arguments]: Add custom
'check phase.
 2021-12-01 13:58:04 +02:00
Giacomo Leidi a8d62aea22
gnu: Add python-dotenv. 
* gnu/packages/python-xyz.scm (python-dotenv): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 13:57:59 +02:00
Ricardo Wurmus 124d76c5c2
gnu: python2-numpydoc: Update to 0.9.1. 
* gnu/packages/python-xyz.scm (python2-numpydoc): Update to 0.9.1; do not
inherit from Python 3 variant.
 2021-12-01 11:39:58 +01:00
Ricardo Wurmus 38d648655b
gnu: python-numpydoc: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-numpydoc): Update to 1.1.0.
[arguments]: Override 'check phase to run tests.
[native-inputs]: Remove python-nose; add python-matplotlib, python-pytest, and
python-pytest-cov.
 2021-12-01 11:39:58 +01:00
Alice BRENON 6367c92c6e
gnu: Add python-mwparserfromhell. 
* gnu/packages/python-web.scm (python-mwparserfromhell): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 11:22:42 +01:00
Efraim Flashner 619e0627a6
gnu: ruby-mocha: Update to 1.13.0. 
* gnu/packages/ruby.scm (ruby-mocha): Update to 1.13.0.
[home-page]: Update to new location.
 2021-12-01 11:39:14 +02:00
Charles f11605d96d
gnu: cl-yxorp: Update to 0.4. 
* gnu/packages/lisp-xyz.scm (sbcl-yxorp): Update to 0.4.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-01 09:44:03 +01:00
Sharlatan Hellseher 4beb013c84
gnu: Add cl-liballegro. 
* gnu/packages/lisp-xyz.scm: (sbcl-cl-liballegro, ecl-cl-liballegro,
  cl-liballegro): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-01 09:44:03 +01:00
Nicolas Vallet d7477f09c3
gnu: Add r-phyloseq. 
* gnu/packages/cran.scm (r-phyloseq): New variable

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 09:29:26 +01:00
Ricardo Wurmus 3411f8d512
gnu: Add r-fmcsr. 
* gnu/packages/bioconductor.scm (r-fmcsr): New variable.
 2021-11-30 22:48:07 +01:00
Ricardo Wurmus e4e50229f1
gnu: python-cloudscraper: Update to 1.2.58. 
* gnu/packages/python-web.scm (python-cloudscraper): Update to 1.2.58.
[source]: Do not delete as many files in snippet; fetch sources via git.
[arguments]: Add build phase 'fix-references; replace 'check phase.
[inputs]: Add node.
[propagated-inputs]: Add python-js2py, python-polling2, and python-responses.
 2021-11-30 20:49:18 +01:00
Ricardo Wurmus 3b74b41498
gnu: Add python-polling2. 
* gnu/packages/python-xyz.scm (python-polling2): New variable.
 2021-11-30 20:49:10 +01:00
Ricardo Wurmus 1a13968210
gnu: Add python-js2py. 
* gnu/packages/python-web.scm (python-js2py): New variable.
 2021-11-30 20:48:34 +01:00
Ricardo Wurmus e35cfeb253
gnu: Add python-pyjsparser. 
* gnu/packages/python-web.scm (python-pyjsparser): New variable.
 2021-11-30 20:48:22 +01:00
Ricardo Wurmus 53a16a2143
gnu: Add r-seuratdata. 
* gnu/packages/cran.scm (r-seuratdata): New variable.
 2021-11-30 20:30:02 +01:00
Ricardo Wurmus 79bc812357
gnu: guile-wisp: Update to 1.0.6. 
* gnu/packages/guile-xyz.scm (guile-wisp): Update to 1.0.6.
 2021-11-30 20:30:02 +01:00
Ricardo Wurmus f7db3bf277
gnu: guile-wisp: Remove trailing #T. 
* gnu/packages/guile-xyz.scm (guile-wisp)[arguments]: Remove trailing #T.
 2021-11-30 20:30:02 +01:00
Nicolas Goaziou a47dfd0e7f
gnu: emacs-fountain-mode: Update to 3.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.6.0.
 2021-11-30 19:59:57 +01:00
Nicolas Goaziou 2ac171867a
gnu: emacs-tramp: Update to 2.5.1.5. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.1.5.
 2021-11-30 19:56:16 +01:00
Hong.Li@mdc-berlin.de 5bdf1b6551
gnu: Add r-rbokeh. 
* gnu/packages/cran.scm (r-rbokeh): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-30 16:46:18 +01:00
Hong.Li@mdc-berlin.de 21bf500ee9
gnu: Add r-gistr. 
* gnu/packages/cran.scm (r-gistr): New variable.
 2021-11-30 16:46:18 +01:00
Hong Li 78f2fe7da8
gnu: r-crul: Update to 1.2.0. 
* gnu/packages/cran.scm (r-crul): Update to 1.2.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-30 16:46:17 +01:00
Ricardo Wurmus 16d7f26fed
gnu: Add python-woob. 
* gnu/packages/python-web.scm (python-woob): New variable.
 2021-11-30 16:46:17 +01:00
Ricardo Wurmus bfaf7b559e
gnu: Add python-xunitparser. 
* gnu/packages/python-check.scm (python-xunitparser): New variable.
 2021-11-30 16:46:17 +01:00
Ricardo Wurmus 173a2998d9
gnu: r-umi4cpackage: Embed references to perl and bowtie2. 
* gnu/packages/bioinformatics.scm (r-umi4cpackage)[arguments]: Add build
phases to patch calls of bowtie2 and perl.
[inputs]: Add perl and bowtie.
[synopsis]: Remove trailing period.
 2021-11-30 16:46:17 +01:00
Julien Lepiller d95a982cdd
gnu: coq: Update to 8.14.0. 
* gnu/packages/coq.scm (coq): Update to 8.14.0.
(coq-bignums): Update to 8.14.0.
(coq-equations): Update to 1.3.
* gnu/packages/patches/coq-fix-envvars.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-11-30 03:52:00 +01:00
Julien Lepiller 189501bf3b
gnu: proof-general: Update to latest commit. 
* gnu/packages/coq.scm (proof-general): Update to latest commit.
[license]: Change to glp3+.
 2021-11-30 03:19:33 +01:00
Julien Lepiller bcd4c7ae6a
gnu: coq-semantics: Update to 8.14.0. 
* gnu/packages/coq.scm (coq-semantics): Update to 8.14.0.
 2021-11-30 03:19:21 +01:00
Tobias Geerinckx-Rice 892f1b7273
services: Accept <inferior-package>s in lieu of <package>s. 
* gnu/services/authentication.scm (fprintd-configuration)
(nslcd-configuration): Substitute file-like objects for package ones.
* gnu/services/cgit.scm (cgit-configuration, opaque-cgit-configuration):
Likewise.
* gnu/services/cups.scm (package-list?, cups-configuration): Likewise.
* gnu/services/dns.scm (verify-knot-configuration)
(ddclient-configuration): Likewise.
* gnu/services/docker.scm (docker-configuration): Likewise.
* gnu/services/file-sharing.scm (transmission-daemon-configuration): Likewise.
* gnu/services/getmail.scm (getmail-configuration): Likewise.
* gnu/services/mail.scm (dovecot-configuration)
(opaque-dovecot-configuration): Likewise.
* gnu/services/messaging.scm (prosody-configuration)
(opaque-prosody-configuration): Likewise.
* gnu/services/monitoring.scm (zabbix-server-configuration)
(zabbix-agent-configuration): Likewise.
* gnu/services/networking.scm (opendht-configuration): Likewise.
* gnu/services/pm.scm (tlp-configuration): Likewise.
* gnu/services/telephony.scm (jami-configuration): Likewise.
* gnu/services/virtualization.scm (libvirt-configuration)
(qemu-guest-agent-configuration): Likewise.
* gnu/services/vpn.scm (openvpn-client-configuration): Likewise.
 2021-11-30 01:08:55 +01:00
Tobias Geerinckx-Rice dc9be12eaf
gnu: squashfs-tools: Update to 4.5. 
* gnu/packages/compression.scm (squashfs-tools): Update to 4.5.
 2021-11-30 01:08:55 +01:00
Tobias Geerinckx-Rice cdf7b3daa3
gnu: toybox: Update to 0.8.5. 
* gnu/packages/busybox.scm (toybox): Update to 0.8.5.
[arguments]: Add a new 'fix-or-skip-broken-tests phase.
Don't explicitly return #t from the other phases.
 2021-11-30 01:08:55 +01:00