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Author SHA1 Message Date
Pierre Neidhardt 875e803e60
gnu: abcl: Update to 1.9.0. 
* gnu/packages/java.scm (abcl): Update to 1.9.0.
* gnu/packages/patches/abcl-fix-build-xml.patch: Update for 1.9.0.
 2022-07-03 20:36:48 +02:00
Pierre Neidhardt 3a45cc634e
gnu: abcl: Fix loading of cl-* packages. 
* gnu/packages/java.scm (abcl)[native-search-paths]: Add XDG_DATA_DIRS where
to cl-* libraries get installed.
 2022-07-03 20:36:48 +02:00
Pierre Neidhardt 13cc3da6b6
gnu: libfixposix: Add C_INCLUDE_PATH to the native-search-paths. 
* gnu/packages/c.scm (libfixposix)[native-search-paths]: Add C_INCLUDE_PATH.

This fixes the loading of cl-iolib among others.
 2022-07-03 20:36:47 +02:00
Liliana Marie Prikler 9cdfecc8a3
etc: teams: Add entry for Liliana Prikler. 
* etc/teams.scm.in ("Liliana Marie Prikler"): New member.
 2022-07-03 17:11:21 +02:00
Liliana Marie Prikler 672c863f55
etc: teams: Sort members lexicographically by last name. 
* etc/teams.scm.in: Sort members lexicographically by last name.
 2022-07-03 17:11:18 +02:00
Liliana Marie Prikler eb44b1f304
gnu: renpy: Install sdk-fonts. 
Without these fonts, the launcher will fail to launch.

* gnu/packages/game-development.scm (renpy)[install]: Also recursively copy
sdk-fonts.
 2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 65c9ecce2a
gnu: python-renpy: Update to 8.0.0. 
* gnu/packages/game-development.scm (python-renpy): Update to 8.0.0.
[source]: Revert back to url-fetch.  Also patch module/setup.py to not refer
to missing sources.
 2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 4cd5f03088
gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.0.0. 
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0-for-renpy-8.0.0.
[source]: Revert to url-fetch.
Also add back the snippet to remove generated sources.
 2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 3e987cf521
gnu: Add font-artifika. 
* gnu/packages/fonts.scm (font-artifika): New variable.
 2022-07-03 17:07:09 +02:00
Andreas Enge 4a2f487740
etc: Update teams. 
* etc/teams.scm.in: Rename maths team to science and add myself to it.
 2022-07-03 16:33:26 +02:00
r0man b4815e570d
gnu: Add Climate Data Operators. 
* gnu/packages/geo.scm (cdo): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 16:04:23 +02:00
Antero Mejr 486251d440
gnu: Add python-deepdish. 
* gnu/packages/python-science.scm (python-deepdish): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 16:04:23 +02:00
Artyom V. Poptsov 91a5176538
gnu: Add utest-h. 
* gnu/packages/c.scm (utest-h): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 16:04:23 +02:00
Ludovic Courtès 9dfe5142bd
gnu: solidity: Remove input labels. 
* gnu/packages/solidity.scm (solidity)[native-inputs]: Remove labels.
 2022-07-03 16:04:22 +02:00
Pierre Neidhardt bee129a806
gnu: sbcl-fof: Also build the fof/mf subsystem. 
* gnu/packages/lisp-xyz.scm (sbcl-fof)[arguments]: Also build the fof/mf subsystem.
[inputs]: Add sbcl-cl-json.
 2022-07-03 14:21:02 +02:00
Ricardo Wurmus 4eaf90470f
etc: Add teams.scm. 
* etc/teams.scm.in: New file.
* configure.ac: Generate executable.
* .gitignore: Ignore generated file.
 2022-07-03 14:12:32 +02:00
Ricardo Wurmus cba98b58bf
services: Add anonip-service-type. 
* gnu/services/web.scm (anonip-configuration): New record type.
(anonip-configuration?, anonip-configuration-anonip,
anonip-configuration-input, anonip-configuration-output,
anonip-configuration-skip-private?, anonip-configuration-column,
anonip-configuration-replacement, anonip-configuration-ipv4mask,
anonip-configuration-ipv6mask, anonip-configuration-increment,
anonip-configuration-delimiter, anonip-configuration-regex): New procedures.
(anonip-service-type): New service type.
* doc/guix.texi (Log Rotation): Add subheading for Anonip Service.
 2022-07-03 14:12:32 +02:00
Guillaume Le Vaillant e0d2f8164e
gnu: sbcl: Disable SB-SIMD module. 
SB-SIMD gets enabled only on x86_64 CPUs supporting AVX2 instructions,
and some x86_64 CPUs don't.

Fixes <https://issues.guix.gnu.org/56353>.
Reported by Wensheng Xie <xiewensheng@hotmail.com>.

* gnu/packages/lisp.scm (sbcl)[arguments]: Disable SB-SIMD in the 'build' and
  'build-doc' phases.
 2022-07-03 12:07:31 +02:00
Trevor Richards f89b581148
gnu: nim: Update to 1.6.6. 
* gnu/packages/nim.scm (nim): Updated to 1.6.6.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-03 10:12:24 +01:00
Christopher Baines 12787d532f
gnu: propeller-binutils: Remove source patches. 
None of the patches seem to apply. The patches that are not used with binutils
are probably too new for the specific commit used here, and the patches that
were once applied have probably been removed, so just don't apply any patches.

* gnu/packages/embedded.scm (propeller-binutils)[source]: Remove patches that
don't apply.
 2022-07-03 10:11:24 +01:00
Christopher Baines 207ef8758e
gnu: java-xpp3: Download source from ci.guix.gnu.org. 
The www.extreme.indiana.edu site is now serving a redirect:

  This site has been deprecated. You can access an archive of this site at
  https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/.

Because this isn't a 404, as it probably should be, guix follows this redirect
and gets some content that isn't the file it asked for.

To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for
the file instead.

* gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org.
 2022-07-03 10:11:24 +01:00
Efraim Flashner c145e51844
gnu: curl: Skip failing test on 32-bit architectures. 
* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom
'skip-failing-tests phase on all 32-bit architectures.
 2022-07-03 10:07:46 +03:00
Efraim Flashner 89fe091bb4
gnu: curl: Fix build on some systems. 
* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around
implicit function declaration.
* gnu/packages/patches/curl-easy-lock.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2022-07-03 10:07:38 +03:00
muradm cec5a522e1
gnu: Add sqls 0.2.18. 
* gnu/packages/databases (sqls): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 01:41:07 +02:00
muradm eed4494da7
gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0. 
* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 01:41:07 +02:00
muradm 9b6226bcda
gnu: Add go-github-com-gorilla-websocket 1.5.0. 
* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 01:41:06 +02:00
Ludovic Courtès e7ab3d33ae
challenge: Do nothing when passed zero arguments. 
Previously, 'guix challenge' without arguments would list live store
items that had been locally built.  This was deemed confusing,
especially since 'list-live' is an expensive operation.

* guix/scripts/challenge.scm (guix-challenge): Warn and exit with 0 when
FILES is empty.
* doc/guix.texi (Invoking guix challenge): Update accordingly.
 2022-07-03 01:41:06 +02:00
Ricardo Wurmus 4745be8514
gnu: r-ifultools: Patch in removed macros to fix build. 
* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility
macros.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus a0142125e6
gnu: r-with-tests: Update to 4.2.1. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 3bb39fc370
gnu: r-tcgabiolinks: Update to 2.24.3. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus af06365a3e
gnu: r-bionetstat: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 26981da96b
gnu: r-bgeedb: Update to 2.22.3. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 5f03154c15
gnu: r-ggbio: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 11f30bfa3d
gnu: r-rsubread: Update to 2.10.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 0a5a06ed24
gnu: r-biosigner: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus fbb6489abd
gnu: r-ropls: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 4aabb20226
gnu: r-genomicscores: Update to 2.8.2. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus b7a5534e61
gnu: r-clusterprofiler: Update to 4.4.4. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus a17b7aabfd
gnu: r-batchelor: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 7ff0669cee
gnu: r-matrixgenerics: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus 605eda07df
gnu: r-zellkonverter: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus febec55f57
gnu: r-simplifyenrichment: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus c4113d3035
gnu: r-rtracklayer: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus 5298b57d56
gnu: r-organismdbi: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus 4e6026031a
gnu: r-limma: Update to 3.52.2. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus 103d4d918f
gnu: r-ensembldb: Update to 2.20.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus 5888776c87
gnu: r-gld: Update to 2.6.5. 
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus 1f6de97557
gnu: r-clubsandwich: Update to 0.5.7. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus f6c9920f62
gnu: r-ranger: Update to 0.14.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus 9360df02d1
gnu: r-car: Update to 3.1-0. 
* gnu/packages/statistics.scm (r-car): Update to 3.1-0.
 2022-07-02 23:56:09 +02:00