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126938 commits

Author SHA1 Message Date
Ricardo Wurmus 52922eac72
gnu: r-tximport: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.30.0.

Change-Id: Ica833c44870a941e780a10e8f72ba6bb80d51c87
2023-11-03 22:49:18 +01:00
Ricardo Wurmus b341a01aea
gnu: r-topgo: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.54.0.

Change-Id: Ie001a348300c3ba353e51e6ae35619f6f20608b9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 0b23c3e384
gnu: r-systempiper: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.8.0.

Change-Id: I6efc8605f7b6d19090ef7f538a455c8155783a8d
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 972c874418
gnu: r-sva: Update to 3.50.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.50.0.

Change-Id: I98ed4d820507efde8901413da1b9edd2df026aa9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus c8df5d8f95
gnu: r-survcomp: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.52.0.

Change-Id: I4a655fc134a6300d0783682be17b9a9b17ea073b
2023-11-03 22:49:18 +01:00
Ricardo Wurmus c123daea71
gnu: r-summarizedexperiment: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.32.0.

Change-Id: Ifa23d01efcdb3b76858715b8e3919a9ceb56a9c1
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 3527647b1e
gnu: r-structuralvariantannotation: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.18.0.

Change-Id: Iee4a06a6c0f22ff0b88a583210968a6a752ff2df
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 05062b3a92
gnu: r-stringdb: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.0.

Change-Id: If98b068a6f09036fa4cadbba3569ac24d242d43c
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 8ea882bb48
gnu: r-stager: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.24.0.

Change-Id: I94dfc44a5437e7bcd4c8b6e258ef62cf7ce2515a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus a78f026f27
gnu: r-spectra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.12.0.
[propagated-inputs]: Add r-metabocoreutils.

Change-Id: I6dcde0647e06d2a051b809c2b9e7cb659ce8733a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 5e36fcc1e6
gnu: r-slingshot: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.10.0.

Change-Id: I827a2ba68caa4a930c29858dcd2a3840449d1c91
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 894a959520
gnu: r-scds: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.18.0.

Change-Id: I6388da9169fd6e93759579b7e378d9037a2fa2c8
2023-11-03 22:49:17 +01:00
Ricardo Wurmus d970fa6a92
gnu: r-trajectoryutils: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.0.

Change-Id: I55d3dd66077721eba7b5de5c6f4d8e8dce18243c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus eafe0f33e5
gnu: r-transcriptr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.30.0.

Change-Id: I63bdde62a0afe545c5538b8dc8c84c5b220d659b
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 3ccfda4799
gnu: r-trackviewer: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.0.

Change-Id: I7e13ad40fef06848d4002875c6640406f0e2c8cd
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 4a0bfc3629
gnu: r-tkwidgets: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.80.0.

Change-Id: I3164946bdf1665872b5d96acdaa0b53103bb9440
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 3302942017
gnu: r-tcgautils: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.0.

Change-Id: I032c2f7fe6dcd40ade4ed736052e1caad79610e6
2023-11-03 22:49:17 +01:00
Ricardo Wurmus a6acba4a2d
gnu: r-singscore: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.22.0.

Change-Id: Iad1bd17ce29ecb3118a4998ab53c3deebbe3354d
2023-11-03 22:49:17 +01:00
Ricardo Wurmus f2d4fb112b
gnu: r-simplifyenrichment: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.12.0.

Change-Id: I3ad0ec6e0e990048d1847e5915d9a63b7efc1db4
2023-11-03 22:49:17 +01:00
Ricardo Wurmus fecb7da1db
gnu: r-shortread: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.60.0.

Change-Id: I130c2f6de4a31c639da2cbddc5d3dd9ef35e3dfb
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 19cc337424
gnu: r-shinymethyl: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.38.0.

Change-Id: I84bf96c91ec31578af9522ccd69693c91d8ac72f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 0c949e4684
gnu: r-sesame: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.20.0.

Change-Id: I9ab2fb2cf0a8e65308820b0e93ed6a9c74fd11e5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 8cc5dee008
gnu: r-seqpattern: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.34.0.

Change-Id: Iaca71f59f8399e2fe27ab545b128dbc16097ac72
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 08fcb9423d
gnu: r-seqlogo: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.68.0.

Change-Id: Ie71132c07d393633dfc20b2dd43f29621627a615
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 61e1d2efca
gnu: r-seqarray: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.0.

Change-Id: I0efc86ef3f9c0a798ee7cb4434092bea8aa143c5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 5fd85a62e0
gnu: r-scry: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.14.0.

Change-Id: I3138f53e6133f96ecd1efb0ccbc002a53d04b6ab
2023-11-03 22:49:17 +01:00
Ricardo Wurmus f5e93e8bed
gnu: r-scmap: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.24.0.

Change-Id: I894d2be7b665d64a3278027b93d36910dcc59114
2023-11-03 22:49:17 +01:00
Ricardo Wurmus bb24565a9f
gnu: r-scdblfinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.16.0.

Change-Id: I9978ed4ba4de89ac1a97a4606498eb0bffe4b47c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 96c6e377e6
gnu: r-scannotatr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.8.0.

Change-Id: Ic38511c26633c146aeab43e51420f8cb66d81557
2023-11-03 22:49:17 +01:00
Ricardo Wurmus bf3e9b2287
gnu: r-saturn: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.10.0.

Change-Id: I2d79ca29c9fe303fef07d046fab802932f62ef6c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 0f43f41994
gnu: r-rtracklayer: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.62.0.

Change-Id: Icc6a2074292ad9426cb9eb2a50c31b307a724202
2023-11-03 22:49:17 +01:00
Ricardo Wurmus d08d8fa8a7
gnu: r-rtcgatoolbox: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.32.1.
[propagated-inputs]: Remove r-rcircos.

Change-Id: I1676a7c25e97fa990e855c2d26ecd268b08c8d94
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 2531eac414
gnu: r-rtcga: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.32.0.

Change-Id: I34d49096aee9329730b009209d60471f0b97ce1a
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 1e454c32d7
gnu: r-rsamtools: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.18.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: I5276250da7f390358cb62e3934aedf61b4a36d67
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 68bdc0a860
gnu: r-rhdf5filters: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.0.
[native-inputs]: Remove r-biocstyle and r-rmarkdown.

Change-Id: I14e7f0e2c5986c35b9c6ca36dcb3f4127cf348aa
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 0e159537dd
gnu: r-rhdf5: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I6423f6b8a92b2053039c2af7f52cbfe047d9f75f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 31d236ad8e
gnu: r-regioner: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.34.0.

Change-Id: I1b8b0d031065a2462d9a812a2ceccf58bf31ff37
2023-11-03 22:49:17 +01:00
Ricardo Wurmus e8e0f0e5b9
gnu: r-rcas: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.2.

Change-Id: I2406be8ad960d235124eabd3d1dab9605994d707
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 45b4cdb52e
gnu: r-rbgl: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.78.0.

Change-Id: I2f99033a91cfd9085df7388bb51418887a70735d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus ff6b2e31c4
gnu: r-protgenerics: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.34.0.

Change-Id: Iede0129b8b5a5164f7efe982d4863e61e526444b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 42504ecfc8
gnu: r-piano: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.18.0.

Change-Id: I3511dae77061b5fca24b8b077b1fba34d613be7c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus fd0e3d812c
gnu: r-pfamanalyzer: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.2.0.

Change-Id: I31ab67f4ac5b5846038e4896fc44a65da8717b27
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 409d6d340d
gnu: r-pcamethods: Update to 1.94.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.94.0.

Change-Id: I67ae7bd85bf7353b038f85842b930337878ea313
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 81172ff685
gnu: r-pcaexplorer: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.28.0.

Change-Id: If0d0369c364c5c665a9cdfe71fb6ce7c4b466b40
2023-11-03 22:49:16 +01:00
Ricardo Wurmus fab197151b
gnu: r-oscope: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.32.0.

Change-Id: Ie2f593d31f51d6fd4954d6eaa633a60e02f8cbee
2023-11-03 22:49:16 +01:00
Ricardo Wurmus d02feac2f1
gnu: r-organismdbi: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.44.0.

Change-Id: I8c018e323daab03e758e8690b31a75c06ae7d748
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 41f7fc3ef5
gnu: r-organism-dplyr: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.30.1.

Change-Id: Ib8c833cd10fa5cc845c954b97a587279cb29127f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 23379de4c9
gnu: r-mzr: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.36.0.

Change-Id: I72f45ac3dbfea48e1327ab6bf87d5ee3eebd5b3d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 376c30b09f
gnu: r-mzid: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.40.0.

Change-Id: Ie85887d844236cc8217f7ccabec284fc4040d3f7
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 24a57583ae
gnu: r-msnid: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.36.0.

Change-Id: I2461051259efcfa92694569689a374a60224e07c
2023-11-03 22:49:16 +01:00