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Author SHA1 Message Date
Ludovic Courtès b60f3941b9
gnu: guix-jupyter: Define 'HOME' prior to 'check' phase. 
Fixes <https://issues.guix.gnu.org/57077>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/package-management.scm (guix-jupyter)[arguments]: Add
'define-home' phase.
 2023-01-20 12:17:54 +01:00
Navid Afkhami 43b7a033e3
gnu: Add r-tsis. 
* gnu/packages/bioinformatics.scm (r-tsis): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-01-20 11:06:43 +01:00
Navid Afkhami ddfe68ebbe
gnu: Add r-doubletcollection. 
* gnu/packages/bioinformatics.scm (r-doubletcollection): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-01-20 11:02:37 +01:00
Navid Afkhami 072f605c12
gnu: Add r-scds. 
* gnu/packages/bioconductor.scm (r-scds): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-01-20 11:01:31 +01:00
Simon Tournier c31d8adcb0
gnu: Add r-numbat. 
* gnu/packages/bioconductor.scm (r-numbat): New variable.
 2023-01-20 10:44:28 +01:00
Simon Tournier 2a2165a18e
gnu: Add r-roptim. 
* gnu/packages/cran.scm (r-roptim): New variable.
 2023-01-20 10:44:28 +01:00
Simon Tournier f145afd16f
gnu: Add r-scistreer. 
* gnu/packages/bioconductor.scm (r-scistreer): New variable.
 2023-01-20 10:44:27 +01:00
Simon Tournier a7f1a1c0f0
gnu: Add python-vireosnp. 
* gnu/packages/bioinformatics.scm (python-vireosnp): New variable.
 2023-01-20 10:40:59 +01:00
Arne Babenhauserheide 0d169401cb
gnu: java-logback-classic: Fix build. 
* gnu/packages/java.scm (java-logback-classic)[arguments]: Use input name
"java-javaee-servletapi" instead of "servlet".

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-01-20 09:38:44 +01:00
Tobias Geerinckx-Rice da9af8c72f
gnu: dovecot-pigeonhole: Update to 0.5.20. 
‘No changes - release done to keep version numbers synced.’

* gnu/packages/mail.scm (dovecot-pigeonhole): Update to 0.5.20.
 2023-01-15 01:00:30 +01:00
Tobias Geerinckx-Rice e2d2f516b2
gnu: dovecot: Update to 2.3.20. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.20.
 2023-01-15 01:00:30 +01:00
Tobias Geerinckx-Rice 1dde14e6d3
gnu: man-pages: Update to 6.02. 
* gnu/packages/man.scm (man-pages): Update to 6.02.
 2023-01-15 01:00:30 +01:00
Tobias Geerinckx-Rice 060b6ffbb4
gnu: libvterm: Update to 0.3.1. 
* gnu/packages/terminals.scm (libvterm): Update to 0.3.1.
 2023-01-15 01:00:30 +01:00
Tobias Geerinckx-Rice 3dbf8c1699
gnu: libupnp: Update to 1.14.15. 
* gnu/packages/upnp.scm (libupnp): Update to 1.14.15.
 2023-01-15 01:00:29 +01:00
Tobias Geerinckx-Rice bc7c609ff5
gnu: diffstat: Update to 1.65. 
* gnu/packages/version-control.scm (diffstat): Update to 1.65.
 2023-01-15 01:00:29 +01:00
Tobias Geerinckx-Rice 33c03a9d8e
gnu: motion: Update to 4.5.1. 
* gnu/packages/video.scm (motion): Update to 4.5.1.
 2023-01-15 01:00:29 +01:00
Tobias Geerinckx-Rice a81f89ba39
gnu: lagrange: Update to 1.14.2. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.14.2.
 2023-01-15 01:00:29 +01:00
André Batista 4e9cb45da0
gnu: tor: Update to 0.4.7.13 [fixes TROVE-2022-002]. 
* gnu/packages/tor.scm (tor): Update to 0.4.7.13.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2023-01-15 01:00:02 +01:00
Tobias Geerinckx-Rice 35955bafc5
gnu: go-github-com-itchyny-gojq: Update to 0.12.11. 
* gnu/packages/web.scm (go-github-com-itchyny-gojq): Update to 0.12.11.
 2023-01-15 01:00:02 +01:00
Tobias Geerinckx-Rice 92b6f227a0
gnu: nginx-documentation: Update to 1.23.3-2916-178f55cf631a. 
* gnu/packages/web.scm (nginx-documentation): Update to 1.23.3-2916-178f55cf631a.
 2023-01-15 01:00:02 +01:00
Tobias Geerinckx-Rice 9f5a248fc9
gnu: nginx: Update to 1.23.3. 
* gnu/packages/web.scm (nginx): Update to 1.23.3.
 2023-01-15 01:00:02 +01:00
Tobias Geerinckx-Rice 9a15bcd949
gnu: berry: Update to 0.1.12. 
* gnu/packages/wm.scm (berry): Update to 0.1.12.
 2023-01-15 01:00:02 +01:00
Tobias Geerinckx-Rice c580a62059
gnu: arandr: Remove input labels. 
* gnu/packages/xdisorg.scm (arandr)[inputs, native-inputs]:
Remove input labels.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice b35c1e5415
gnu: arandr: Truth is obsolete. 
* gnu/packages/xdisorg.scm (arandr)[source, arguments]:
Remove trailing #t.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice 0e4afd4c86
gnu: arandr: Update to 0.1.11. 
* gnu/packages/xdisorg.scm (arandr): Update to 0.1.11.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice 6569bf924f
gnu: mcelog: Update to 191. 
* gnu/packages/linux.scm (mcelog): Update to 191.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice a611b99fe9
gnu: ipset: Update to 7.17. 
* gnu/packages/linux.scm (ipset): Update to 7.17.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice d35689f2fc
gnu: mimalloc: Update to 2.0.9. 
* gnu/packages/c.scm (mimalloc): Update to 2.0.9.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice 7caa81e0a8
gnu: console-setup: Update to 1.212. 
* gnu/packages/xorg.scm (console-setup): Update to 1.212.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice 49f8d936ad
gnu: bolt: Update to 0.9.5. 
* gnu/packages/linux.scm (bolt): Update to 0.9.5.
 2023-01-15 01:00:01 +01:00
Tobias Geerinckx-Rice 0c29d994fd
gnu: btrfs-progs: Update to 6.1.2. 
* gnu/packages/linux.scm (btrfs-progs): Update to 6.1.2.
 2023-01-15 01:00:00 +01:00
Tobias Geerinckx-Rice c67c31b097
gnu: lesspipe: Update to 2.07. 
* gnu/packages/less.scm (lesspipe): Update to 2.07.
 2023-01-15 01:00:00 +01:00
Tobias Geerinckx-Rice 7c63c11c15
gnu: minisign: Update to 0.11. 
* gnu/packages/crypto.scm (minisign): Update to 0.11.
 2023-01-15 01:00:00 +01:00
Tobias Geerinckx-Rice b2d0ba2b30
gnu: lightspark: Update to 0.8.6.1. 
* gnu/packages/animation.scm (lightspark): Update to 0.8.6.1.
 2023-01-15 01:00:00 +01:00
Sughosha 3846ceec4e
gnu: Add petri-foo. 
* gnu/packages/music.scm (petri-foo): New public variable.
* gnu/packages/patches/petri-foo-0.1.87-fix-recent-file-not-exist.patch
* gnu/local.mk (GNU_SYSTEM_MODULES): Add the new patch file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:50 +01:00
Nicolas Graves f59df2f488
gnu: python-eventlet: Exclude broken test. 
* gnu/packages/python-xyz.scm (python-eventlet):
  [arguments] Exclude broken test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:50 +01:00
Nicolas Graves 7a36e8e218
gnu: python-eventlet: Manage broken tests with nosetests. 
* gnu/packages/python-xyz.scm (python-eventlet):
  [arguments] Manage broken tests with nosetests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:49 +01:00
Nicolas Graves 8803cb9eb9
gnu: python-gevent: Update to 22.10.2. 
* gnu/packages/python-xyz.scm (python-gevent): Update to 22.10.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:49 +01:00
Nicolas Graves bdbe7cbe81
gnu: python-greenlet: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-greenlet): Update to 2.0.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:49 +01:00
Morgan Smith c5586ceee8
gnu: Fix home-page typos 
* gnu/packages/accessibility.scm (espeakup): ttps -> https
* gnu/packages/emacs-xyz.scm (emacs-soap-client): httpa -> https
* gnu/packages/gstreamer.scm (esounds): Remove newline

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:49 +01:00
Morgan Smith 287e282236
gnu: hledger: Install documentation. 
* gnu/packages/finance.scm (hledger)[phases]: Add install-doc phase

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:49 +01:00
Vivien Kraus b9d676e0ee
gnu: nettle: Fix mingw cross-compilation. 
* gnu/packages/nettle.scm (nettle-2) [move-static-libraries]: .dll.a files are
not static libraries.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-19 17:54:49 +01:00
Ludovic Courtès 88854b1a4e
gnu: gnulib: Refer to "gcc" as provided via implicit package inputs. 
Fixes <https://issues.guix.gnu.org/60947>.

Previously, with the #+(file-append gcc "/bin/gcc") reference, the
resulting derivation would end up referring to the grafted GCC when
grafts are enabled, and to the ungrafted one otherwise.  As a result, a
different derivation would be produced depending on whether grafts are
enabled.

* gnu/packages/build-tools.scm (gnulib-checkout)[arguments]: Refer to
"gcc", not #+(file-append gcc "/bin/gcc").
 2023-01-19 17:54:49 +01:00
Ludovic Courtès 825c2c5174
gnu: guile-next: Really depend on self. 
Previously, when cross-compiling, "self" would point to GUILE-3.0
because it came from (package-native-inputs guile-3.0).

When cross-compiling, ./configure would see a version in 'guile-3.0.pc'
different from its own version and would thus bail out:

  building Guile 3.0.8-1.cabbage but `/gnu/store/…/bin/guile' has version 3.0.7

* gnu/packages/guile.scm (guile-next)[native-inputs]: Replace "self".
 2023-01-19 17:54:48 +01:00
Ludovic Courtès 75b7082bdf
gnu: guile-next: Add '.tarball-version' file to get correct version. 
So far, "guile --version" and 'guile-3.0.pc' would use "UNKNOWN" as the
version string, making the package unsuitable as a drop-in replacement
for the 'guile-3.0' package.

* gnu/packages/guile.scm (guile-next)[arguments]: Add 'set-version'
phase.
 2023-01-19 17:54:48 +01:00
Andrew Tropin 26bb41d6d5
gnu: tdlib: Update to commit with fixed formatted_phone_number test. 
The previously used commit was failing against formatted_phone_number test,
the 8ceeb39f5d51b49045b001b04f6f660c04f76698 has a fix for it.  The last
commit containing the fix and passing tdlib's CI was picked.

* gnu/packages/messaging.scm (tdlib): Update to commit with fixed
formatted_phone_number test.
 2023-01-19 08:33:44 +04:00
Maxim Cournoyer 8221cb6d2a
doc: Fix typo. 
* doc/guix.texi (Cross-Compilation): Replace "penaly" with "penalty".
Replace "few users" with "fewer users".
 2023-01-18 21:40:07 -05:00
Maxim Cournoyer 6ba3ed13ef
gnu: Add rpi-fbcp. 
* gnu/packages/raspberry-pi.scm (rpi-fbcp): New variable.
 2023-01-18 21:33:26 -05:00
Maxim Cournoyer 6c11c75702
gnu: Add raspberrypi-userland. 
* gnu/packages/raspberry-pi.scm (raspberrypi-userland): New variable.
 2023-01-18 21:33:22 -05:00
Maxim Cournoyer 9530ee9f9c
gnu: Add u-boot-ts7970-q-2g-1000mhz-c-bootloader. 
* gnu/bootloader/u-boot.scm (u-boot-ts7970-q-2g-1000mhz-c-bootloader): New
variable.
 2023-01-18 21:25:25 -05:00