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117250 commits

Author SHA1 Message Date
Ricardo Wurmus
6652f72e13
gnu: r-matrixgenerics: Update to 1.12.2.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
1b83659902
gnu: r-systempiper: Update to 2.6.3.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
0a0304ef3a
gnu: r-summarizedexperiment: Update to 1.30.2.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
464ad1fd79
gnu: r-maaslin2: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1.
[propagated-inputs]: Remove r-lpsymphony; add r-tibble.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
5588562fb9
gnu: r-limma: Update to 3.56.2.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
5db8d3e600
gnu: r-lfa: Update to 2.0.11.
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.0.11.
[propagated-inputs]: Add r-rspectra.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
3193a2a04d
gnu: r-genomicfeatures: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.1.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
2b62bc3f67
gnu: r-deseq2: Update to 1.40.2.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.2.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
6604189891
gnu: r-biomart: Update to 2.56.1.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.1.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
1f0633db11
gnu: r-annotationforge: Update to 1.42.2.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.2.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
c397d6a5e1
gnu: r-genomeinfodb: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.1.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
3c201e1aab
gnu: r-annotationdbi: Update to 1.62.2.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.2.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
565d84170a
gnu: r-affy: Update to 1.78.1.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.1.
2023-07-12 14:29:10 +02:00
Ricardo Wurmus
a9d140996c
gnu: r-isoformswitchanalyzer: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1.
[propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer, r-s4vectors,
r-saturn, r-summarizedexperiment, r-sva, and r-tidyr.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
b864a5956f
gnu: r-iranges: Update to 2.34.1.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.1.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
5eaf9f6b83
gnu: r-delayedarray: Update to 0.26.6.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.6.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
6e83dee12a
gnu: r-bambu: Update to 3.2.5.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.5.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
f0c82ddced
gnu: r-alevinqc: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.1.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
4db85c197b
gnu: r-ancombc: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.1.
[propagated-inputs]: Remove r-dplyr, r-emmeans, r-magrittr, r-rlang, r-rngtools,
r-tibble, and r-tidyr; add r-gtools, r-matrix, and r-multcomp.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
558637533f
gnu: r-gdsfmt: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.1.
[properties]: Tell updater to leave the extra inputs be.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
b4cafa71ae
gnu: Add r-saturn.
* gnu/packages/bioconductor.scm (r-saturn): New variable.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
990bac0ea5
gnu: Add r-pfamanalyzer.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): New variable.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
b10bff65be
gnu: r-mzr: Update to 2.34.1.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.1.
[properties]: Tell updater to not remove the "boost" input.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
ee50cae529
gnu: r-norm: Update to 1.0-11.1.
* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.1.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
c141725c65
gnu: r-logspline: Update to 2.1.20.
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.20.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
5a1c16fa18
gnu: r-pbapply: Update to 1.7-2.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.7-2.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
42c29d9d22
gnu: r-robust: Update to 0.7-2.
* gnu/packages/statistics.scm (r-robust): Update to 0.7-2.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
2108aa1975
gnu: r-rrcov: Update to 1.7-4.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-4.
2023-07-12 14:29:09 +02:00
Ricardo Wurmus
387c1fafce
gnu: r-robustbase: Update to 0.99-0.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-0.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
86c7032abf
gnu: r-deoptimr: Update to 1.0-14.
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-14.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
f9dc378cb4
gnu: r-mvtnorm: Update to 1.2-2.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-2.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
e8ef13993e
gnu: r-rmarkdown: Update to 2.23.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.23.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
7cb71cb2fb
gnu: r-rcpparmadillo: Update to 0.12.4.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.1.0.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
b8112b4600
gnu: r-rstudioapi: Update to 0.15.0.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.15.0.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
c5c0f85b77
gnu: r-xml2: Update to 1.3.5.
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.5.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
4ec94fe0a9
gnu: r-locfit: Update to 1.5-9.8.
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.8.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
1493844a1e
gnu: r-dbplyr: Update to 2.3.3.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.3.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
6276fbb64a
gnu: r-testthat: Update to 3.1.10.
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.10.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
b372435930
gnu: r-matrix: Update to 1.6-0.
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-0.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
f072cd9486
gnu: r-kernsmooth: Update to 2.23-22.
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-22.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
42b5758b82
gnu: r-paws: Update to 0.3.0.
* gnu/packages/cran.scm (r-paws): Update to 0.3.0.
2023-07-12 14:29:08 +02:00
Ricardo Wurmus
5933aadf2f
gnu: r-paws-compute: Update to 0.3.1.
* gnu/packages/cran.scm (r-paws-compute): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
c7d49778e2
gnu: r-paws-storage: Update to 0.3.0.
* gnu/packages/cran.scm (r-paws-storage): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
39302d72b8
gnu: r-paws-database: Update to 0.3.0.
* gnu/packages/cran.scm (r-paws-database): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
6df06f6712
gnu: r-paws-networking: Update to 0.3.0.
* gnu/packages/cran.scm (r-paws-networking): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
5e436baab7
gnu: r-paws-management: Update to 0.3.1.
* gnu/packages/cran.scm (r-paws-management): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
969d35e169
gnu: r-paws-machine-learning: Update to 0.3.0.
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
9ac7524dd4
gnu: r-paws-analytics: Update to 0.3.0.
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
885c7b0b3c
gnu: r-paws-security-identity: Update to 0.3.1.
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
Ricardo Wurmus
f85b362b81
gnu: r-paws-application-integration: Update to 0.3.1.
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.3.1.
2023-07-12 14:29:07 +02:00