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Author SHA1 Message Date
Ricardo Wurmus
6dc6099853 gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3. 
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
  New variable.
 2016-04-11 15:11:16 +02:00
Ricardo Wurmus
943bd6279f gnu: Add r-bsgenome-celegans-ucsc-ce6. 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): New
  variable.
 2016-04-11 15:11:16 +02:00
Ricardo Wurmus
a3e9028770 gnu: Add r-bsgenome-mmusculus-ucsc-mm9. 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): New
  variable.
 2016-04-11 15:11:15 +02:00
Ricardo Wurmus
ae2462f7dd gnu: Add r-motifrg. 
* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
 2016-04-11 11:03:27 +02:00
Ricardo Wurmus
c90a4baff6 gnu: Add r-bsgenome-hsapiens-ucsc-hg19. 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): New
  variable.
 2016-04-11 11:03:27 +02:00
Ricardo Wurmus
936e7d6774 gnu: Add r-seqlogo. 
* gnu/packages/bioinformatics.scm (r-seqlogo): New variable.
 2016-04-11 11:03:27 +02:00
Leo Famulari
ce8eeaf7a4 gnu: borg: Update to 1.0.1. 
* gnu/packages/backup.scm (borg): Update to 1.0.1.
 2016-04-11 01:38:38 -04:00
Leo Famulari
d87fd79953 gnu: vdirsyncer: Update to 0.9.3. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.9.3.
 2016-04-10 22:31:32 -04:00
Efraim Flashner
4b47cbfa9a gnu: python-werkzeug: Update to 0.11.5. 
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.5.
 2016-04-10 23:36:58 +03:00
Efraim Flashner
9ba40f05c8 gnu: python-pytest-localserver: Change inputs. 
* gnu/packages/python.scm (python-pytest-localserver)[native-inputs]:
Remove zip.
[proapgated-inputs]: Move python-werkzeug ...
[inputs]: ... to here.
[propagated-inputs]: Move python-pytest, python-requests, python-six ...
[native-inputs]: ... to here.
 2016-04-10 22:45:53 +03:00
Efraim Flashner
630d938fbe gnu: python-pytest-cache: Change inputs. 
* gnu/packages/python.scm (python-pytest-cache)[propagated-inputs]: Move
python-execnet ...
[inputs]: ... to here. Add python-apipkg, python-py, python-pytest.
 2016-04-10 22:38:44 +03:00
Efraim Flashner
584d068f0f gnu: python-execnet: Change inputs. 
* gnu/packages/python.scm (python-execnet)[propagated-inputs]: Move
python-apipkg ...
[inputs]: ... to here.
 2016-04-10 22:32:39 +03:00
Efraim Flashner
b43bab3c2a gnu: python-apipkg: Change inputs. 
* gnu/packages/python.scm (python-apipkg)[native-inputs]: Move
python-pytest.
[inputs]: ... to here.
 2016-04-10 22:30:19 +03:00
Efraim Flashner
fbe9abcce4 gnu: python-pytest-xdist: Change inputs. 
* gnu/packages/python.scm (python-pytest-xdist)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Move python-execnet, python-py, python-pytest ...
[inputs]: ... to here. Add python-apipkg.
[properties]: Define python2-pytest-xdist.
(python2-pytest-xdist): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 22:07:45 +03:00
Efraim Flashner
54cd239b35 gnu: python-pytest-runner: Define python2-pytest-runner. 
* gnu/packages/python.scm (python-pytest-runner)[properties]: Define
python2-pytest-runner.
[native-inputs]: Remove python-setuptools.
[home-page]: Project has moved to Github.
(python2-pytest-runner)[native-inputs]: Add python2-setuptools.
 2016-04-10 21:17:10 +03:00
Efraim Flashner
545f4a1c3c gnu: python-pytest-cov: Update to 2.2.1. 
* gnu/packages/python.scm (python-pytest-cov): Update to 2.2.1.
[native-inputs]: Remove python-setuptools. Move python-coverage,
python-pytest ...
[inputs]: ... to here.
[properties]: Define python2-pytest-cov.
(python-pytest-cov): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
 2016-04-10 21:00:42 +03:00
Efraim Flashner
eb3d3503f3 gnu: python-parse: Update to 1.6.6. 
* gnu/packages/python.scm (python-parse): Update to 1.6.6.
 2016-04-10 20:52:04 +03:00
Efraim Flashner
ed80839b8c gnu: python-tzlocal: Update to 1.2.2. 
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.2.
[native-inputs]: Move python-pytz ...
[inputs]: ... to here.
 2016-04-10 20:45:49 +03:00
Efraim Flashner
eebf6f01e4 gnu: python-parsedatetime: Update to 2.1. 
* gnu/packages/python.scm (parsedatetime): Update to 2.1.
[native-inputs]: Remove python-setuptools, add python-nose, python-pyicu.
[properties]: Define python2-variant.
(python2-parsedatetime): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 20:07:57 +03:00
Efraim Flashner
394b8060b1 gnu: python-dateutil-2: Update to 2.5.2. 
* gnu/packages/python.scm (python-dateutil-2): Update to 2.5.2.
[inputs]: Remove python-setuptools.
[properties]: Define python2-dateutil-2.
(python2-dateutil-2): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
 2016-04-10 19:43:27 +03:00
Efraim Flashner
13f3ff3522 gnu: python-keyring: Update to 8.7. 
* gnu/packages/python.scm (python-keyring): Update to 8.7.
[native-inputs]: Remove python-setuptools, python-mock.
[properties]: Define python2-keyring.
(python2-keyring): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 18:02:32 +03:00
Efraim Flashner
fe147c4143 gnu: python-h5py: Update to 2.6.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.6.0.
[inputs]: Add python-six.
[native-inputs]: Add python-pkgconfig.
[properties]: Define python2-h5py.
 2016-04-10 17:12:31 +03:00
Efraim Flashner
61c9babb6e gnu: python-pytz: Update to 2016.3. 
* gnu/packages/python.scm (python-pytz): Update to 2016.3.
 2016-04-10 12:43:42 +03:00
Efraim Flashner
3f37db6b0e gnu: python-babel: Update to 2.3.2. 
* gnu/packages/python.scm (python-babel): Update to 2.3.2.
 2016-04-10 12:21:51 +03:00
Efraim Flashner
db5567f753 gnu: python-ccm: Update to 2.1.6. 
* gnu/packages/python.scm (python-ccm): Update to 2.1.6.
 2016-04-10 12:16:44 +03:00
Efraim Flashner
286f1bac9e gnu: python-httplib2: Update to 0.9.2. 
* gnu/packages/python.scm (python-httplib2): Update to 0.9.2.
 2016-04-10 12:13:02 +03:00
Efraim Flashner
81b9bbbd57 gnu: python-paramiko: Update to 1.16.0. 
* gnu/packages/python.scm (python-paramiko): Update to 1.16.0.
 2016-04-10 11:57:11 +03:00
Efraim Flashner
623cd1ab18 gnu: youtube-dl: Update to 2016.04.06. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.04.06.
[native-inputs]: Remove python-setuptools.
 2016-04-10 11:17:55 +03:00
Efraim Flashner
6a308947b4 gnu: python-requests: Rearrange inputs. 
* gnu/packages/python.scm (python-requests)[propagated-inputs]: Move
python-py, python-pytest, python-pytest-cov, python-wheel from here...
[native-inputs]: ... to here.
 2016-04-10 10:55:28 +03:00
Efraim Flashner
5b9fe59fbe gnu: livestreamer: Remove extra inputs. 
* gnu/packages/video.scm (livestreamer)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Remove python-singledispatch.
 2016-04-10 10:33:59 +03:00
Efraim Flashner
42aa73b337 gnu: offlineimap: Add sqlite support. 
* gnu/packages/mail.scm (offlineimap)[inputs]: Add python2-pysqlite.
[arguments]: Wrap binary with python2-pysqlite's path.
 2016-04-10 09:01:00 +03:00
Efraim Flashner
58e87f66ce gnu: icecat: Update to 38.7.1-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.7.1-gnu1.
[sources]: Remove numerous patches.
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-icecatbug-1248851.patch,
gnu/packages/patches/icecat-update-graphite2.patch,
gnu/packages/patches/icecat-update-graphite2-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-10 08:40:42 +03:00
John Darrington
9c45c51992 gnu: Add c-graph. 
* gnu/packages/maths.scm (c-graph): New variable.
 2016-04-09 09:16:48 +02:00
Chris Marusich
1c6ae41875 gnu: Add ibus-anthy. 
* gnu/packages/ibus.scm (ibus-anthy): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>.
 2016-04-09 09:36:29 +08:00
Chris Marusich
4862910d0a gnu: Add anthy. 
* gnu/packages/anthy.scm: New file.
* gnu-system.am: Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-09 09:34:05 +08:00
Kei Yamashita
2331e5e860 gnu: Add wmclock. 
* gnu/packages/gnustep.scm (wmclock): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-08 17:50:10 +03:00
McKinley Olsen
1ccc3da8d2 gnu: pcre2: Update to 10.21. 
gnu/packages/pcre.scm (pcre2): Update to 10.21.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-08 19:28:47 +08:00
Andreas Enge
7d4c6ee878 gnu: singular: Update hash. 
* gnu/packages/algebra.scm (singular)[source]: Update upstream hash. See
  http://www.singular.uni-kl.de:8002/trac/ticket/754 .
 2016-04-08 11:17:46 +02:00
Mark H Weaver
1a9f5e9ff3 gnu: linux-libre-4.1: Update to 4.1.21. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.21.
 2016-04-07 21:20:28 -04:00
David Thompson
4da5fe6f88 gnu: redis: Update to 3.0.7. 
* gnu/packages/databases.scm (redis): Update to 3.0.7.
 2016-04-07 16:44:04 -04:00
Mathieu Lirzin
a0c6a36b28 gnu: python-pkgconfig: Add license prefix. 
* gnu/packages/python.scm (python-pkgconfig)[license]: Fix prefix.
 2016-04-07 20:12:14 +02:00
John Darrington
c791efde74 gnu: Add macchanger. 
* gnu/packages/networking.scm (macchanger): New variable.
 2016-04-07 19:12:28 +02:00
David Thompson
c5b5e275a7 gnu: node: Update to 5.10.0. 
* gnu/packages/node.scm (node): Update to 5.10.0.
 2016-04-07 11:52:02 -04:00
David Thompson
73b8714fb1 gnu: libuv: Update to 1.8.0. 
* gnu/packages/libevent.scm (libuv): Update to 1.8.0.
 2016-04-07 11:52:02 -04:00
Efraim Flashner
5eabbc3e90 gnu: abiword: Add epub, goffice support. 
* gnu/packages/abiword.scm (abiword.scm)[arguments]: Add "epub" and
"goffice" to "enable-plugins" configure flag.
[inputs]: Add goffice, libchamplain, telepathy-glib.
 2016-04-07 11:02:52 +03:00
Andreas Enge
435a0462be gnu: python-cython: Update to 0.24. 
* gnu/packages/python.scm (python-cython): Update to 0.24.
 2016-04-07 00:45:08 +02:00
Andreas Enge
8e45188525 gnu: Add python-cysignals. 
* gnu/packages/python.scm (python-cysignals, python2-cysignals): New
  variables.
 2016-04-07 00:45:08 +02:00
Roel Janssen
9e3ba31c53 gnu: Add r-zlibbioc. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Roel Janssen
b669d9c4c8 gnu: Add r-variantannotation. 
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Ludovic Courtès
a7681d29dc gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 23:27:10 +02:00
Efraim Flashner
0ea4079f34 gnu: abiword: Update to 3.0.1. 
* gnu/packages/abiword.scm (abiword): Update to 3.0.1.
[source]: Remove 4 patches.
[arguments]: Disable tests.
[inputs]: Add libxslt, replace gtk+-2 with gtk+.
[native-inputs]: Add libtool.
* gnu/packages/patches/abiword-link-plugins-against-backend.patch,
gnu/packages/patches/abiword-no-include-glib-internal-headers.patch,
gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch,
gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-06 23:15:59 +03:00
Leo Famulari
17946534a4 gnu: hexchat: Update to 2.12.0. 
* gnu/packages/messaging.scm (hexchat): Update to 2.12.0.
 2016-04-06 16:11:57 -04:00
Kei Yamashita
bd688698b6 gnu: Add wmcpuload. 
* gnu/packages/gnustep.scm (wmcpuload): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 14:51:27 -04:00
Andreas Enge
4323a5f0fd gnu: Add python-pkgconfig. 
* gnu/packages/python.scm (python-pkgconfig, python2-pkgconfig): New
  variables.
 2016-04-06 20:10:41 +02:00
Roel Janssen
4971d5d072 gnu: Add progress. 
* gnu/packages/admin.scm (progress): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-06 09:16:50 +03:00
Kei Yamashita
7407f7fef6 gnu: Add wmnd. 
* gnu/packages/gnustep.scm (wmnd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-06 09:05:37 +03:00
Andreas Enge
aae03c484f gnu: Add singular. 
* gnu/packages/algebra.scm (singular): New variable.
 2016-04-06 01:28:03 +02:00
Tobias Geerinckx-Rice
998afc3608 gnu: Add iodine. 
* gnu/packages/networking.scm (iodine): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-05 23:24:34 +02:00
Andreas Enge
53696f10c1 gnu: Add cddlib. 
* gnu/packages/maths.scm (cddlib): New variable.
 2016-04-05 19:22:36 +02:00
Andreas Enge
b146763a86 gnu: Add 4ti2. 
* gnu/packages/maths.scm (4ti2): New variable.
 2016-04-05 18:48:02 +02:00
Andreas Enge
14e6520e2b gnu: Add NTL. 
* gnu/packages/algebra.scm (ntl): New variable.
 2016-04-05 17:43:50 +02:00
Efraim Flashner
588ad54ed3 gnu: mercurial: Update to 3.7.3 [fixes CVE-2016-{3068,3069,3630}]. 
* gnu/packages/version-control.scm (mercurial): Update to 3.7.3.
 2016-04-05 17:31:34 +03:00
Efraim Flashner
877889f3ca gnu: python-futures: Remove variable. 
* gnu/packages/python.scm (python-futures): Remove it.
 2016-04-05 15:02:30 +03:00
Efraim Flashner
f71d1a08a1 gnu: git-annex-remote-hubic: Change to python2. 
* gnu/packages/version-control.scm (git-annex-remote-hubic)
[arguments]: Build with python2.
 2016-04-05 15:02:30 +03:00
Kei Yamashita
f9ab1da0fa gnu: Add wmbattery. 
* gnu/packages/gnustep.scm (wmbattery): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-05 11:32:09 +03:00
Roel Janssen
9b36e25607 gnu: vcftools: Update to 0.1.14. 
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.14.
[arguments]: Do not modify phases as it is not needed anymore.
[native-inputs]: Add 'pkg-config'.
[home-page]: Update to new location.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-05 11:29:32 +03:00
Efraim Flashner
17130e3919 gnu: mutt: Update to 1.6.0. 
* gnu/packages/mail.scm (mutt): Update to 1.6.0.
 2016-04-05 11:28:39 +03:00
Efraim Flashner
7a93feb874 gnu: vim: Use 'modify-phases'. 
* gnu/packages/vim.scm (vim)[arguments]: Use 'modify-phases' syntax.
 2016-04-05 10:03:07 +03:00
Leo Famulari
c613a21ba6 gnu: mpd: Update to 0.19.14. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.14.
 2016-04-05 00:34:52 -04:00
Mark H Weaver
37b2dba1cc gnu: libextractor: Improve ffmpeg-3 patch. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: Add additional
fixes and harmonize with patches in upstream repository.
 2016-04-04 23:49:48 -04:00
Mark H Weaver
fd7fd3c167 gnu: libextractor: Add patch to fix build with ffmpeg-3. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnunet.scm (libextractor)[source]: Add patch.
 2016-04-04 22:55:52 -04:00
Raymond Nicholson
e71b20e5b5 gnu: mplayer: Update to 1.3.0. 
* gnu/packages/video.scm (mplayer): Update to 1.3.0.
 2016-04-04 16:33:23 -04:00
Raymond Nicholson
2a972b2fdf gnu: gst-libav: Update to 1.8.0. 
* gnu/packages/ffmpeg.scm (gst-libav): Update to 1.8.0.
 2016-04-04 16:27:04 -04:00
Efraim Flashner
49c90efb66 gnu: global: Update to 6.5.4. 
* gnu/packages/code.scm (global): Update to 6.5.4.
 2016-04-04 23:05:30 +03:00
Mark H Weaver
4c95bbba78 gnu: network-manager: Update to 1.0.12. 
* gnu/packages/gnome.scm (network-manager): Update to 1.0.12.
 2016-04-04 15:14:56 -04:00
Efraim Flashner
5c4d98ab50 gnu: scheme48: Update to 1.9.2. 
* gnu/packages/scheme.scm (scheme48): Update to 1.9.2.
 2016-04-04 22:01:40 +03:00
Leo Famulari
2fc629ddc4 gnu: python-pyopenssl: Update to 16.0.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to
16.0.0.
[arguments]: Remove field.
 2016-04-04 12:32:59 -04:00
Leo Famulari
4f363e73f8 gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.1. 
These packages should be udpated together.

* gnu/packages/python.scm (python-cryptography): Update to 1.3.1.
(python-cryptogprahy-vectors): Update to 1.3.1.
 2016-04-04 12:32:59 -04:00
Leo Famulari
61a4332d9e gnu: python-pytest: Update to 2.7.3. 
* gnu/packages/python.scm (python-pytest, python2-pytest): Update to 2.7.3.
 2016-04-04 12:32:59 -04:00
Efraim Flashner
560c07954c gnu: i3-wm: Update to 4.12. 
* gnu/packages/wm.scm (13-wm): Update to 4.12.
 2016-04-04 10:24:31 +03:00
John Darrington
0b65f1a013 gnu: Move pspp from maths.scm to statistics.scm 
* gnu/packages/maths.scm (pspp): Deleted.
* gnu/packages/statistics.scm (pspp): New variable.
 2016-04-04 07:15:14 +02:00
Efraim Flashner
16736e0234 gnu: irssi: Update to 0.8.19. 
* gnu/packages/irc.scm (irssi): Update to 0.8.19.
 2016-04-04 07:24:31 +03:00
Efraim Flashner
6c277c8999 gnu: libpsl: Update to 0.13.0. 
* gnu/packages/web.scm (libpsl): Update to 0.13.0.
[arguments]: Remove bootstrap phase.
[inputs]: Add python-2.
[native-inputs]: Remove autoconf, automake, gettext, which, libtool,
pkg-config.
 2016-04-03 23:35:29 +03:00
Leo Famulari
8d9ac92622 gnu: libsrtp: Update to 1.5.4 [fixes CVE-2015-6360]. 
* gnu/packages/telephony.scm (libsrtp): Update to 1.5.4.
 2016-04-03 14:05:12 -04:00
Jochem Raat
0f3449fe3c gnu: check: Update home page URL. 
* gnu/packages/check.scm (check)[home-page]: Update to new location.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-03 20:16:10 +03:00
Alex Kost
000bc04d52 gnu: magit: Update to 2.6.0. 
* gnu/packages/emacs.scm (magit): Update to 2.6.0.
 2016-04-03 20:15:33 +03:00
rain1
c5e1fcd0ae gnu: ffmpeg: Update to 3.0.0. 
* gnu/packages/video.scm (ffmpeg): Update to 3.0.0.
[inputs]: Remove libquvi.
[arguments]: Remove '--enable-libquvi" configure flag, rename mipsdspri1
flag to mipsdsp.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-03 19:39:40 +03:00
Ben Woodcroft
e25f017422 gnu: Remove duplicate python-pbr. 
This is a follow-up to commit 1ef09c0c75.

* gnu/packages/openstack.scm (python-pbr, python2-pbr): Move from here ...
* gnu/packages/python.scm: ... to here.
(python-pbr, python2-pbr): Delete duplicate packages.
 2016-04-03 21:09:17 +10:00
Ben Woodcroft
692add53bc gnu: python-lockfile: Update to 0.12.2. 
* gnu/packages/python.scm (python-lockfile): Update to 0.12.2.
[native-inputs]: Add python-pbr.
(python2-lockfile): Update to 0.12.2.
[native-inputs]: Add python2-setuptools, python2-pbr.
 2016-04-03 16:08:11 +10:00
Ben Woodcroft
1804527ab0 gnu: python-lockfile Use 'python2-variant'. 
* gnu/packages/python.scm (python-lockfile): Use 'python2-variant'.
[properties]: New field.
(python2-lockfile): Use 'strip-python2-variant'.
 2016-04-03 16:08:11 +10:00
Ben Woodcroft
1ef09c0c75 gnu: Add python-pbr. 
* gnu/packages/python.scm (python-pbr, python2-pbr): New variables.
 2016-04-03 16:08:11 +10:00
Ben Woodcroft
78c0d323e9 gnu: python-pandas: Update to 0.18.0. 
* gnu/packages/python.scm (python-pandas, python2-pandas): Update to 0.18.0.
[arguments]: Enable tests.
 2016-04-03 16:08:11 +10:00
Efraim Flashner
fd7575d479 gnu: pspp: Update to 0.10.1. 
* gnu/packages/maths.scm (pspp): Update to 0.10.1.
 2016-04-03 08:47:35 +03:00
Efraim Flashner
e94616b996 gnu: iso-codes: Update to 3.67. 
* gnu/packages/iso-codes.scm (iso-codes): Update to 3.67.
[inputs]: Replace python-2 with python-wrapper.
[home-page]: Use https.
 2016-04-03 07:43:41 +03:00
Ludovic Courtès
0736643424 gnu: transmission: Move '.desktop' file to the "gui" output. 
Fixes <http://bugs.gnu.org/23066>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/bittorrent.scm (transmission)[arguments]: In 'move-gui',
move 'share/applications' to the 'gui' output.
 2016-04-02 22:40:18 +02:00
Efraim Flashner
451c1436a3 gnu: mc: Update to 4.8.16. 
* gnu/packages/mc.scm (mc): Update to 4.8.16.
[source]: Remove patch.
* gnu/packages/patches/mc-fix-ncurses-build.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-02 23:39:32 +03:00
Efraim Flashner
57818b6e3c gnu: gnucash: Update to 2.6.12. 
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.12.
[home-page]: Update to new homepage.
 2016-04-02 22:10:29 +03:00
Ben Woodcroft
a754eaf16d gnu: ruby-2.1: Update to 2.1.10. 
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.10.
 2016-04-02 09:16:17 +10:00
Efraim Flashner
f04433773d gnu: glpk: Update to 4.60. 
* gnu/packages/maths.scm (glpk): Update to 4.60.
 2016-04-01 16:52:54 +03:00
Ludovic Courtès
915363a3e2 gnu: wicd: Add template for WPA2-TTLS. 
* gnu/packages/patches/wicd-wpa2-ttls.patch: New file.
* gnu/packages/wicd.scm (wicd)[source]: Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-01 13:59:58 +02:00
Ludovic Courtès
f5480572d0 gnu: wicd: Update to 1.7.4. 
* gnu/packages/wicd.scm (wicd): Update to 1.7.4.
[source]: Remove 'wicd-template-instantiation.patch'.
* gnu/packages/patches/wicd-template-instantiation.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-01 13:59:58 +02:00
Efraim Flashner
dbeaf8f203 gnu: postgresql: Update to 9.5.2. [fixes CVE-2016-2193, CVE-2016-3065] 
* gnu/packages/databases.scm (postgresql): Update to 9.5.2.
 2016-04-01 13:57:21 +03:00
Ricardo Wurmus
6499b70ebf gnu: Add r-ztable. 
* gnu/packages/statistics.scm (r-ztable): New variable.
 2016-04-01 11:46:19 +02:00
Jelle Licht
ec67294611 gnu: Add jq. 
* gnu/packages/web.scm: (jq): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-01 11:56:30 +03:00
Jelle Licht
2d8cf0b3e7 gnu: Add oniguruma. 
* gnu/packages/textutils.scm (oniguruma): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-01 11:38:06 +03:00
alírio eyng
52af45adeb gnu: fontforge: Build fonts bit-reproducibly. 
* gnu/packages/fontutils.scm (fontforge)[source](snippet): Modify
tottf.c.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Jan Nieuwenhuizen
2cdeecbe4d gnu: move miscfiles into gnu-doc.scm 
* gnu/packages/miscfiles.scm: Remove file.
* gnu-sytem.am: Remove it.
* gnu/packages/gnu-doc.scm (miscfiles): Move here.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Jan Nieuwenhuizen
ec0730cb67 gnu: Add gnu-standards. 
* gnu/packages/gnu-doc.scm: New file.
* gnu-system.am: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
alírio eyng
47268eec13 gnu: font-gnu-freefont-ttf: Update to 20120503 and build from source. 
* gnu/packages/fonts.scm (font-gnu-freefont-ttf): Update to 20120503.
[arguments]: Build from source.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Efraim Flashner
b5afe6f031 gnu: gnupg-2.0: Update to 2.0.30. 
* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.30.
 2016-03-31 21:14:25 +03:00
Taylan Ulrich Bayırlı/Kammer
d0457553d5 gnu: Add nmap. 
* gnu/packages/admin.scm (nmap): New variable.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-03-31 02:08:56 -04:00
Chris Marusich
12af303f47 gnu: Add python2-s3cmd. 
* gnu/packages/python.scm (python2-s3cmd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Chris Marusich
daeeea7154 gnu: Add python-magic. 
* gnu/packages/python.scm (python-magic, python2-magic): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Kei Yamashita
21d1811301 gnu: Add MilkyTracker. 
* gnu/packages/music.scm (milkytracker): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-03-30 23:45:44 +03:00
Efraim Flashner
ddb8312911 gnu: python2-pbcore: Update to 1.2.8. 
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8.
[native-inputs]: Add python2-docutils, python2-nose, python2-sphinx.
 2016-03-30 22:45:35 +03:00
rain1
96e9f097ee gnu: linux-libre: Avoid introducing timestamps into the build. 
* gnu/packages/linux.scm (linux-libre)[build-phase]: Set the
KCONFIG_NOTIMESTAMP and KBUILD_BUILD_TIMESTAMP environment variables to
avoid introducing timestamps into the build outputs.
 2016-03-30 15:22:04 -04:00
Efraim Flashner
8caf80fcf4 gnu: libcue: Fix source url. 
* gnu/packages/cdrom.scm (libcue)[source]: Fix url.
[home-page]: Project has moved to Github.
 2016-03-30 13:39:42 +03:00
Roel Janssen
fa9f0e6c25 gnu: r-devtools: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.10.0.
   (r-devtools)[propagated-inputs]: Add r-withr.
 2016-03-30 12:02:40 +02:00
Roel Janssen
a080e50c15 gnu: Add r-withr. 
* gnu/packages/statistics.scm (r-withr): New variable.
 2016-03-30 12:02:28 +02:00
Ricardo Wurmus
f315f4fcab gnu: r-genomation: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.2.2.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus
571f0b63d5 gnu: r-genomicfeatures: Update to 1.22.13. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
  1.22.13.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus
ffaf72ad96 gnu: r-rtracklayer: Update to 1.30.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.30.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus
ac2d8b0fb8 gnu: r-genomicalignments: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
  1.6.3.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus
7eade1c5f9 gnu: r-summarizedexperiment: Update to 1.0.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
  1.0.2.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus
53fd0f5e1d gnu: r-biostrings: Update to 2.38.4. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.38.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus
5fe3115415 gnu: r-genomicranges: Update to 1.22.4. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.22.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus
9cc22d28d8 gnu: r-genomeinfodb: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.6.3.
 2016-03-30 11:59:15 +02:00
Efraim Flashner
48fa9312ab gnu: libpaper: Update source url. 
Reported by shanemikel_ on irc.

* gnu/packages/ghostscript.scm (libpaper)[source]: Update source url to
download from Fedora.
[home-page]: Use https.
 2016-03-30 10:49:03 +03:00
Ludovic Courtès
61cdad351d gnu: guix: Ignore the user's 'GUILE_LOAD_COMPILED_PATH'. 
Reported by <rain1@openmailbox.org>.

* gnu/packages/package-management.scm (guix-0.10.0)[arguments]: Use '=
instead of 'prefix in call to 'wrap-program'.
 2016-03-29 22:13:20 +02:00
Rene Saavedra
3a9a4c51e8 gnu: Add libzapojit. 
* gnu/packages/gnome.scm (libzapojit): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-29 22:13:20 +02:00
Leo Famulari
b7fbf297c8 gnu: khal: Disable failing tests. 
* gnu/packages/calendar.scm (khal)[arguments]: Disable failing tests in
'disable-tests' phase.
 2016-03-29 15:35:00 -04:00
Efraim Flashner
d1ceedf8b1 gnu: gst-plugins-good: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.8.0.
[home-page]: Use https.
[arguments]: Disable tests that fail non-deterministically.
 2016-03-29 21:34:52 +03:00
Efraim Flashner
40dad30c5e gnu: gst-plugins-ugly: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner
d2b5dec5b0 gnu: python-gst: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner
70e863e53e gnu: gst-plugins-base: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner
ab0a56201d gnu: gstreamer: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.8.0.
 2016-03-29 21:34:52 +03:00
Ludovic Courtès
50ebd439c7 Merge branch 'version-0.10.0' 2016-03-29 16:13:41 +02:00
Ludovic Courtès
f98b48dc51 gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 7611393.
(guix): Set to GUIX-DEVEL.
 2016-03-29 09:35:22 +02:00
宋文武
67c2fc01a0 gnu: Add uwsgi. 
* gnu/packages/web.scm (uwsgi): New variable.
 2016-03-29 11:50:24 +08:00
宋文武
7ad1fee52e gnu: Add cgit. 
* gnu/packages/version-control.scm (cgit): New variable.
 2016-03-29 11:50:24 +08:00
Ludovic Courtès
7611393547 gnu: guix: Default to 0.10.0. 
This updates 58f0aae.

* gnu/packages/package-management.scm (guix): Set to GUIX-0.10.0.
 2016-03-28 23:54:48 +02:00
Ludovic Courtès
58f0aae5cb gnu: guix: Update to 0.10.0. 
* gnu/packages/package-management.scm (guix-0.8.3): Rename to...
(guix-0.10.0): ... this.  Adjust users.
(guix): Set to GUIX-0.10.0.
 2016-03-28 23:38:00 +02:00
Ricardo Wurmus
e0b90dbf65 gnu: qtractor: Update to 0.7.5. 
* gnu/packages/music.scm (qtractor): Update to 0.7.5.
 2016-03-28 09:52:16 +02:00
Leo Famulari
36c2c8c826 gnu: beets: Run tests with python-nose. 
* gnu/packages/music.scm (nose)[native-inputs]: Add python-nose.
[arguments]: Replace 'check' and use python-nose.
 2016-03-27 18:24:19 -04:00
Leo Famulari
d3e3468fb8 gnu: python-pyechonest: Clean up description. 
* gnu/packages/music.scm (pyechonest)[description]: Remove "open source" from
the description.
 2016-03-26 17:25:13 -04:00
Efraim Flashner
e12f047f75 gnu: pspp: Update to 0.10.0. 
* gnu/packages/maths.scm (pspp): Update to 0.10.0.
[inputs]: Switch gtk+-2 to gtk+, gtksourceview-2 to gtksourceview.
 2016-03-26 22:39:29 +03:00
David Thompson
8d50632373 gnu: sdl2-ttf: Update to 2.0.14. 
* gnu/packages/sdl.scm (sdl2-ttf): Update to 2.0.14 and remove bundled
  libraries from source tarball.
 2016-03-26 13:35:06 -04:00
David Thompson
64ee72e124 gnu: sdl2-image: Update to 2.0.1. 
* gnu/packages/sdl.scm (sdl2-image): Update to 2.0.1.
 2016-03-26 13:35:06 -04:00
David Thompson
efd75ade17 gnu: sdl2-mixer: Update to 2.0.1. 
* gnu/packages/sdl.scm (sdl2-mixer): Update to 2.0.1 and remove bundled
  libraries in source tarball.
 2016-03-26 13:35:06 -04:00
David Thompson
a313e0850c gnu: sdl-mixer: Add ModPlug support. 
* gnu/packages/sdl.scm (sdl-mixer)[inputs]: Add libmodplug.
 2016-03-26 13:35:06 -04:00
David Thompson
4c0e59d1a8 gnu: sdl2: Update to 2.0.4. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.4.
 2016-03-26 13:35:06 -04:00
David Thompson
7c776ddcc0 gnu: crossguid: Set explicit file name for source checkout. 
* gnu/packages/kodi.scm (crossguid)[source]: Set explicit file-name to
  satisfy linter.
 2016-03-26 09:52:28 -04:00
Mark H Weaver
c7762233fb Revert "gnu: expat: Replace with 2.1.1 [fixes CVE-2015-1283]." 
This reverts commit 6458876597.
 2016-03-25 17:20:57 -04:00
Leo Famulari
15bdd91cc4 gnu: diffoscope: Update to 51. 
* gnu/packages/package-management.scm (diffoscope): Update to 51.
 2016-03-25 17:17:06 -04:00
Leo Famulari
54c30ebcb1 gnu: python-atomicwrites: Update to 1.0.0. 
* gnu/packages/python.scm (python-atomicwrites, python2-atomicwrites):
Update to 1.0.0.
 2016-03-25 17:08:47 -04:00
Mark H Weaver
6458876597 gnu: expat: Replace with 2.1.1 [fixes CVE-2015-1283]. 
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat-2.1.1): New variable.
 2016-03-25 17:04:28 -04:00
Ludovic Courtès
a2da8c173a gnu: guix: Update development snapshot to dd21308. 
* gnu/packages/package-management.scm (guix-devel): Update to dd21308.
 2016-03-25 10:52:25 +01:00
Ricardo Wurmus
7affb2c1ac gnu: lilypond: Fix check for fontforge version. 
* gnu/packages/music.scm (lilypond)[arguments]: Patch configure script
  to find actual fontforge version.
 2016-03-25 10:03:11 +01:00
John Darrington
dd21308225 gnu: postgresql: Substitute hard coded "/bin/sh". 
* gnu/packages/databses.scm (postgresql): substitute /bin/sh
with location of bash binary.
 2016-03-25 08:04:56 +01:00
Leo Famulari
43a58615bf gnu: htop: Update to 2.0.1. 
* gnu/packages/admin.scm (htop): Update to 2.0.1.
 2016-03-24 23:06:09 -04:00
Ludovic Courtès
7feebd33ae gnu: Add 'info-reader'. 
* gnu/packages/texinfo.scm (info-reader): New variable.
 2016-03-24 22:47:15 +01:00
Leo Famulari
229b36617a gnu: python-llfuse-0.41: Update to 0.41.1. 
* gnu/packages/python.scm (python-llfuse-0.41): Update to 0.41.1.
 2016-03-24 15:30:51 -04:00
Leo Famulari
6fc5c11b81 gnu: Add borg. 
* gnu/packages/backup.scm (borg): New variable.
 2016-03-24 15:30:51 -04:00
Leo Famulari
5a39b07f8a gnu: attic: Specify dependency on python-llfuse-0.41. 
* gnu/packages/backup.scm (attic)[inputs]: Specify dependency on
python-llfuse-0.41.
 2016-03-24 15:30:51 -04:00
Leo Famulari
cd0569c498 gnu: python-llfuse: Update to 1.0, keep 0.41 variant. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.0.
(python-llfuse)[properties]: New field.
[license]: Remove 'expat'.
(python2-llfuse): Use 'strip-python2-variant'.
[propagated-inputs]: Add python2-contextlib2.
(python-llfuse-0.41): New variable.
 2016-03-24 15:30:51 -04:00
Leo Famulari
bd74be7b8c gnu: python-msgpack: Use 'python2-variant'. 
* gnu/packages/python.scm (python-msgpack)[native-inputs]: Remove field.
[properties]: New field.
(python2-msgpack): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-03-24 15:30:51 -04:00
Leo Famulari
ae831df428 gnu: python-msgpack: Update to 0.4.7. 
* gnu/packages/python.scm (python-msgpack, python2-msgpack): Update to 0.4.7.
[source]: Use pypi-uri.
 2016-03-24 15:30:51 -04:00
Ricardo Wurmus
1d216b6ec9 gnu: Remove "r-repository" property. 
* gnu/packages/bioinformatics.scm (r-biocgenerics, r-s4vectors,
r-iranges, r-genomeinfodb, r-xvector, r-genomicranges)[properties]:
Remove "r-repository" property.
 2016-03-24 16:18:01 +01:00
Andreas Enge
08595262db gnu: pari-gp: Syntactic changes. 
* gnu/packages/algebra.scm (pari-gp)[arguments]: Use modify-phases syntax.
 2016-03-24 14:44:08 +01:00
Efraim Flashner
473dbe9b19 gnu: modem-manager: Update to 1.4.14. 
* gnu/packages/freedesktop.scm (modem-manager): Update to 1.4.14.
 2016-03-24 08:37:07 +02:00
Mark H Weaver
385b1be8d0 gnu: webkitgtk: Update to 2.12.0. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.0.
 2016-03-23 18:47:41 -04:00
Ludovic Courtès
ee37e1e501 gnu: shepherd: Update to 0.3.1. 
* gnu/packages/admin.scm (shepherd): Update to 0.3.1.
 2016-03-23 23:43:50 +01:00
Nils Gillmann
7b150a24fe gnu: libressl: Update to 2.3.3. 
* gnu/packages/tls.scm (libressl): Update to 2.3.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-23 13:39:17 -04:00
Ricardo Wurmus
c1f73569be gnu: Add AIDE. 
* gnu/packages/admin.scm (aide): New variable.
 2016-03-23 08:08:02 +01:00
Leo Famulari
6139fed563 gnu: icecast: Update to 2.4.3 [fixes CVE-2015-3026]. 
* gnu/packages/xiph.scm (icecast): Update to 2.4.3.
 2016-03-22 23:13:58 -04:00
Mark H Weaver
58cc369f32 gnu: webkitgtk-2.4: Update to 2.4.10 [fixes many security flaws]. 
Fixes CVE-2014-1748, CVE-2015-1071, CVE-2015-1076, CVE-2015-1081,
CVE-2015-1083, CVE-2015-1120, CVE-2015-1122, CVE-2015-1127, CVE-2015-1153,
CVE-2015-1155, CVE-2015-3658, CVE-2015-3659, CVE-2015-3727, CVE-2015-3731,
CVE-2015-3741, CVE-2015-3743, CVE-2015-3745, CVE-2015-3747, CVE-2015-3748,
CVE-2015-3749, CVE-2015-3752, CVE-2015-5788, CVE-2015-5794, CVE-2015-5801,
CVE-2015-5809, CVE-2015-5822, and CVE-2015-5928.

* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.10.
[source]: Remove patch.
 2016-03-22 07:38:22 -04:00
Mark H Weaver
1020fb6ac7 gnu: linux-libre-4.1: Update to 4.1.20. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.20.
 2016-03-21 22:53:55 -04:00
Ludovic Courtès
cd6cc144e0 Merge branch 'security-updates' 2016-03-22 00:14:03 +01:00
Ricardo Wurmus
ffc13e753b gnu: chicken: Build with GCC 4.8. 
* gnu/packages/scheme.scm (chicken)[native-inputs]: Add GCC 4.8.
 2016-03-21 22:08:24 +01:00
Ricardo Wurmus
416a5a9a51 gnu: chicken: Disable port tests. 
* gnu/packages/scheme.scm (chicken)[arguments]: Do not run port tests.
 2016-03-21 22:08:24 +01:00
Ricardo Wurmus
acb3807079 gnu: chicken: Use "modify-phases" syntax. 
* gnu/packages/scheme.scm (chicken)[arguments]: Use "modify-phases"
  syntax.
 2016-03-21 22:08:24 +01:00
Ricardo Wurmus
d0d9411015 gnu: chicken: Update to 4.10.0. 
* gnu/packages/scheme.scm (chicken): Update to 4.10.0.
 2016-03-21 22:08:23 +01:00
Leo Famulari
b0bb013698 gnu: mutt: Enable header caching. 
* gnu/packages/mail.scm (mutt)[inputs]: Add gdbm.
[arguments]: Pass --enable-hcache to #:configure-flags.
 2016-03-21 16:48:39 -04:00
Efraim Flashner
506379664a gnu: gmtp: Update to 1.3.10. 
* gnu/packages/libusb.scm (gmtp): Update to 1.3.10.
 2016-03-21 20:52:26 +02:00
Ricardo Wurmus
c84ceace14 gnu: artanis: Update to 0.1.2. 
* gnu/packages/guile.scm (artanis): Update to 0.1.2.
[arguments]: Set DESTDIR.
 2016-03-21 17:44:39 +01:00
Ricardo Wurmus
71cafa0472 gnu: Add r-doparallel. 
* gnu/packages/statistics.scm (r-doparallel): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus
b2cdb0271b gnu: Add r-foreach. 
* gnu/packages/statistics.scm (r-foreach): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus
7a6f5f0323 gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus
264df1a49d gnu: Add r-iterators. 
* gnu/packages/statistics.scm (r-iterators): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus
9128db2178 gnu: Add ustr. 
* gnu/packages/textutils.scm (ustr): New variable.
 2016-03-21 15:53:40 +01:00
Efraim Flashner
ce16d1dc94 gnu: ddrescue: Update to 1.21. 
* gnu/packages/disk.scm (ddrescue): Update to 1.21.
 2016-03-21 15:22:31 +02:00
Ludovic Courtès
c035145968 gnu: udisks: Enforce non-reference of the "doc" output. 
* gnu/packages/freedesktop.scm (udisks)[arguments]: Add
  #:disallowed-references.
 2016-03-20 22:52:33 +01:00
Ludovic Courtès
e71ef7adae system: Make sure fonts are searched for in the system profile. 
This fixes a bug whereby fonts in /run/current-system/profile would be
invisible to Fontconfig.

* gnu/packages/fontutils.scm (fontconfig): Add comment about system
profile not being searched.
* gnu/system/shadow.scm (default-skeletons)[fonts.conf-content,
fonts.conf]: New variable.
Add FONTS.CONF to the skeletons.
 2016-03-20 15:27:44 +01:00
Ludovic Courtès
0bd3597bbe gnu: gnome: Add dependency on font-abattis-cantarell. 
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add
FONT-CANTARELL.
 2016-03-20 15:05:12 +01:00
Ludovic Courtès
71be99b8b6 gnu: Add font-abattis-cantarell. 
* gnu/packages/fonts.scm (font-cantarell): New variable.
 2016-03-20 01:07:37 +01:00
Ludovic Courtès
329a702634 gnu: fontforge: Make builds bit-reproducible. 
* gnu/packages/fontutils.scm (fontforge)[source](snippet, modules): New
fields.
 2016-03-19 15:57:07 +01:00
alírio eyng
56586557dd gnu: fontforge: Update to 20150824. 
* gnu/packages/fontutils.scm (fontforge): Update to 20150824.
[inputs]: Add libltdl, libxft, python.
[native-inputs]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-19 15:36:26 +01:00
Ludovic Courtès
7c49ab5b1c gnu: kodi: Remove @acronym from description. 
This works around <http://bugs.gnu.org/21772>.

* gnu/packages/kodi.scm (crossguid): Remove @acronym.
 2016-03-19 14:41:56 +01:00
Ludovic Courtès
5697fdc366 gnu: r-dnacopy: Fix home page URL. 
* gnu/packages/bioinformatics.scm (r-dnacopy)[home-page]: Add missing
URI scheme.
 2016-03-18 23:00:04 +01:00
Ludovic Courtès
6cbc8d5766 gnu: gnome: Disable hardware acceleration check via 'gnome.desktop'. 
* gnu/packages/gnome.scm (gnome-session)[arguments]: Add
'disable-hardware-acceleration-check' phase.
 2016-03-18 19:42:00 +01:00
Ludovic Courtès
a0d7baaf48 gnu: gnome-session: Make sure 'gsettings' is found. 
* gnu/packages/gnome.scm (gnome-session)[arguments]: Add
'wrap-gnome-session' phase.
 2016-03-18 19:42:00 +01:00
Leo Famulari
3bf429af2f gnu: Add beets. 
* gnu/packages/music.scm (beets): New variable.
 2016-03-18 14:27:16 -04:00
Leo Famulari
064503aaa2 gnu: Add python-rarfile. 
* gnu/packages/python.scm (python-rarfile, python2-rarfile): New
variables.
* gnu/packages/patches/python-rarfile-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-03-18 14:27:16 -04:00
Leo Famulari
13edb0e5c3 gnu: Add python2-unicodecsv. 
* gnu/packages/python.scm (python2-unicodecsv): New variable.
 2016-03-18 14:27:16 -04:00
Leo Famulari
25a7db0ad3 gnu: Add python-jellyfish. 
* gnu/packages/python.scm (python-jellyfish, python2-jellyfish): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
efe0b14369 gnu: Add python-mpd2. 
* gnu/packages/mpd.scm (python-mpd2, python2-mpd2): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
76b9488534 gnu: Add python2-pathlib. 
* gnu/packages/python.scm (python-pathlib, python2-pathlib): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
0efde7d6d6 gnu: Add python-responses. 
* gnu/packages/python.scm (python-responses, python2-responses): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
603d665bc3 gnu: Add python-cookies. 
* gnu/packages/python.scm (python-cookies, python2-cookies): New variable.
 2016-03-18 14:27:16 -04:00
Leo Famulari
acd7351ff6 gnu: Add python-pylast. 
* gnu/packages/music.scm (python-pylast, python2-pylast): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
e8fee6486f gnu: Add python-pyechonest. 
* gnu/packages/music.scm (python-pyechonest, python2-pyechonest): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
f3b3d78fbc gnu: Add python-flask. 
* gnu/packages/python.scm (python-flask, python2-flask): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
8975de8821 gnu: Add python-musicbrainzngs. 
* gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): New
variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
cedac813a5 gnu: Add python-munkres. 
* gnu/packages/python.scm (python-munkres, python2-munkres): New variables.
 2016-03-18 14:27:16 -04:00
Leo Famulari
3f7a182d25 gnu: Add python-mutagen. 
* gnu/packages/music.scm (python-mutagen, python2-mutagen): New variables.
 2016-03-18 14:27:16 -04:00
Mark H Weaver
0e0fd3ef10 gnu: linux-libre-4.4: Update to 4.4.6. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.6.
 2016-03-18 11:03:16 -04:00
David Thompson
8961b4d362 gnu: bundler: Update to 1.11.2. 
* gnu/packages/ruby.scm (bundler): Update to 1.11.2.
 2016-03-18 08:48:40 -04:00
Andreas Enge
019b38758c gnu: vigra: Update to 1.11.0. 
* gnu/packages/image.scm (vigra)[source]: Update to 1.11.0.
  [arguments]: Disable parallel builds.
 2016-03-18 09:01:02 +01:00
Efraim Flashner
c5e2b69d59 gnu: aria2: Update to 1.21.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.21.0.
 2016-03-18 08:29:30 +02:00
Mark H Weaver
e3d3546eda gnu: libotr: Fix tests on mips64el. 
* gnu/packages/patches/libotr-test-auth-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (libotr)[source]: Add patch.
 2016-03-17 19:05:08 -04:00
Efraim Flashner
f1723b8be6 gnu: postgresql: Update to 9.5.1. 
* gnu/packages/databases.scm (postgresql): Update to 9.5.1.
 2016-03-17 21:59:32 +02:00
Efraim Flashner
23bbd7dd60 gnu: mysql: Update to 5.7.11. 
* gnu/packages/databases.scm (mysql): Update to 5.7.11.
[source]: Add archives as alternate download location.
[arguments]: Remove custom phase 'strip-extra-references. Add
substitution to target boost-1.60.
 2016-03-17 21:59:32 +02:00
Andy Wingo
2914af3c96 gnu: gnome-session: Add elogind input. 
* gnu/packages/gnome.scm (gnome-session): Add elogind input, while
  disabling the use of systemd's journal.
 2016-03-17 18:11:42 +01:00
Ricardo Wurmus
953c12232f gnu: bless: Remove bundled sources for sparsehash. 
* gnu/packages/bioinformatics.scm (bless)[source]: Delete
"google-sparsehash" sources.
[inputs]: Add "sparsehash".
 2016-03-17 13:01:31 +01:00
Ricardo Wurmus
6c1305f9ec gnu: Add CD-HIT. 
* gnu/packages/bioinformatics.scm (cd-hit): New variable.
 2016-03-17 13:01:31 +01:00
Andy Wingo
fa4b8badf0 gnu: elogind: Update to 219.14. 
* gnu/packages/freedesktop.scm (elogind): Update to 219.14.
 2016-03-17 09:44:32 +01:00
Alex Kost
e6527d643e gnu: emacs-pdf-tools: Add missing input. 
This is a followup to commit eccd0b57a1.

* gnu/packages/emacs.scm (emacs-pdf-tools)[propagated-inputs]: Add
'let-alist'.
 2016-03-17 10:49:45 +03:00
Alex Kost
1bcae5c5c5 gnu: emacs-pdf-tools: Use emacs-build-system for elisp side. 
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Add phases from
emacs-build-system to build elisp side.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-17 10:49:45 +03:00
Ricardo Wurmus
5e3161d38e gnu: Add WAH plugins. 
* gnu/packages/audio.scm (wah-plugins): New variable.
 2016-03-17 08:25:21 +01:00
Ricardo Wurmus
c04b4e7aea gnu: Add STE plugins. 
* gnu/packages/audio.scm (ste-plugins): New variable.
 2016-03-17 08:25:21 +01:00
Ricardo Wurmus
75f45d16d4 gnu: Add FIL plugins. 
* gnu/packages/audio.scm (fil-plugins): New variable.
 2016-03-17 08:25:21 +01:00
Ricardo Wurmus
dffb6c3be6 gnu: Add REV plugins. 
* gnu/packages/audio.scm (rev-plugins): New variable.
 2016-03-17 08:25:21 +01:00
Ricardo Wurmus
8ba62f92ec gnu: Add AMB plugins. 
* gnu/packages/audio.scm (amb-plugins): New variable.
 2016-03-17 08:25:21 +01:00
Ricardo Wurmus
ed17465d3d gnu: Add g2reverb. 
* gnu/packages/audio.scm (g2reverb): New variable.
 2016-03-17 08:25:21 +01:00
Ricardo Wurmus
eb4fca7ebf gnu: Add vco-plugins. 
* gnu/packages/audio.scm (vco-plugins): New variable.
 2016-03-17 08:25:21 +01:00
Ricardo Wurmus
fb2e072cec gnu: Add mcp-plugins. 
* gnu/packages/audio.scm (mcp-plugins): New variable.
 2016-03-17 08:25:21 +01:00
Jochem Raat
65829fec47 gnu: Add perl-text-neattemplate. 
* gnu/packages/perl.scm (perl-text-neattemplate): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-17 00:39:33 -04:00
Tobias Geerinckx-Rice
08e9daf505 gnu: Add freefall. 
* gnu/packages/linux.scm (freefall): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-17 00:25:41 -04:00
Efraim Flashner
e3bf5d2cb2 gnu: mariadb: Update to 10.1.12. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.12.
 2016-03-17 02:17:04 +02:00
Eric Bavier
dfdf571688 gnu: petsc: Fix compiler configuration references. 
* gnu/packages/maths.scm (petsc)[arguments]: When patching compiler
  driver paths, do not assume they come from fortran input.
 2016-03-16 18:32:25 -05:00
Eric Bavier
d588422e13 gnu: slepc: Set origin file-name. 
* gnu/packages/maths.scm (slepc)[source]: Add file-name.
 2016-03-16 18:32:25 -05:00
Mark H Weaver
ce362de86e gnu: Fix definitions of gcc-toolchain-4.8 and gcc-toolchain-4.9. 
* gnu/packages/commencement.scm (gcc-toolchain-4.8): Use gcc-4.8,
not gcc-final.
(gcc-toolchain-4.9): Use gcc-final, not gcc-4.9.
* gnu/packages/gcc.scm (gcc): Add reminder comment for the future.
 2016-03-16 18:06:52 -04:00
Ludovic Courtès
092dd6541f gnu: guix: Update development snapshot to 71e2065. 
* gnu/packages/package-management.scm (guix-devel): Update to 71e2065.
 2016-03-16 19:03:12 +01:00
Efraim Flashner
87f7625bf5 gnu: offlineimap: Update to 6.7.0. 
* gnu/packages/mail.scm (offlineimap): Update to 6.7.0.
 2016-03-16 19:52:40 +02:00
Andreas Enge
81b55bf7a9 gnu: cm: Update to 0.3. 
* gnu/packages/algebra.scm (cm): Update to 0.3.
  [license]: Change to gpl3+.
 2016-03-16 14:29:36 +01:00
Roel Janssen
247d498aaa gnu: Add r-dnacopy. 
* gnu/packages/bioinformatics.scm (r-dnacopy): New variable.
 2016-03-16 11:23:27 +01:00
Rob Syme
6a35566df7 gnu: Add codingquarry. 
* gnu/packages/bioinformatics.scm (codingquarry): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-16 04:49:27 -04:00
Tobias Geerinckx-Rice
8e14e059c4 gnu: Add idle3-tools. 
* gnu/packages/disk.scm (idle3-tools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-16 02:35:06 -04:00
Efraim Flashner
892f92b7aa gnu: neon: Update to 0.30.1. 
* gnu/packages/version-control.scm (neon): Update to 0.30.1.
 2016-03-16 05:46:50 +02:00
Efraim Flashner
5575917d13 gnu: mercurial: Update to 3.7.2. 
* gnu/packages/version-control.scm (mercurial): Update to 3.7.2.
[source]: Update to mercurial-scm.org.
[home-page]: Same.
 2016-03-16 05:46:50 +02:00