Commit graph

46004 commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
70d6ec3e4f
doc: Correct the software behind ci.guix.gnu.org.
* doc/guix.texi (Invoking guix publish): It runs Cuirass.
2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice
44b5f28a77
doc: Remove references to hydra.gnu.org.
* doc/contributing.texi (Packaging Guidelines, Submitting Patches):
Replace hydra URL with @value{SUBSTITUTE-SERVER}.
* doc/guix.texi (Official Substitute Server): Remove ‘hydra’ @cindex.
(Substitute Server Authorization): Remove note about hydra.gnu.org.pub.
2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice
414c4de15d
guix-install.sh: Don't authorise hydra.gnu.org.
* etc/guix-install.sh (sys_authorize_build_farms): Authorise only
ci.guix.gnu.org and make all references to it singular.
2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice
a3efe269b5
gnu: flashrom: Update to 1.1.
* gnu/packages/flashing-tools.scm (flashrom): Update to 1.1.
2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice
ad9baf38ce
gnu: di: Update to 4.47.1.
* gnu/packages/admin.scm (di): Update to 4.47.1.
2019-06-29 06:28:50 +02:00
Eric Bavier
30833b1397
gnu: stow: Update to 2.3.0.
* gnu/packages/package-management.scm (stow): Update to 2.3.0.
[propagated-inputs]: New field.
2019-06-28 22:49:21 -05:00
Eric Bavier
d1555f34c0
gnu: Add Perl Clone::Choose.
* gnu/packages/perl.scm (perl-clone-choose): New variable.
2019-06-28 22:44:59 -05:00
Ivan Petkov
f5de2b9a3e
gnu: rust: use llvm@8
* gnu/packages/llvm.scm (llvm): Rename to...
(llvm-8): ...this.
(llvm): New variable.
* gnu/packages/rust.scm (rust)[inputs]: Use llvm-8
2019-06-28 18:31:51 -07:00
Ivan Petkov
f676b2a45f
gnu: rust: downgrade older versions to llvm@6
* gnu/packages/rust.scm: (rust-1.30): Remove llvm override.
2019-06-28 18:31:51 -07:00
Ivan Petkov
f309420b2d
gnu: rust: remove debug-info patch thanks to newer gdb version
* gnu/local.mk: (dist_patch_DATA): Delete
%D%/packages/patches/rust-1.30-gdb-llvm.patch
* gnu/packages/rust.scm: (rust-1.30): Delete patch overrides.
(rust-1.31): Delete patch overrides.
2019-06-28 18:31:47 -07:00
Ricardo Wurmus
3d0c9ff83e
gnu: r-quantreg: Update to 5.41.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.41.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
73a29d39b3
gnu: r-fpc: Update to 2.2-3.
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-3.
[propagated-inputs]: Remove r-mvtnorm.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
666a5a649c
gnu: r-mclust: Update to 5.4.4.
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.4.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
fad641716e
gnu: r-mvtnorm: Update to 1.0-11.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-11.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
30f7acdb6b
gnu: r-segmented: Update to 1.0-0.
* gnu/packages/statistics.scm (r-segmented): Update to 1.0-0.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
5eddf1e291
gnu: r-plotrix: Update to 3.7-6.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-6.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
0b17f1d1dd
gnu: r-dbplyr: Update to 1.4.2.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.2.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
ef558bcfc5
gnu: r-rlang: Update to 0.4.0.
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.0.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
45ad3fa9e1
gnu: r-gdtools: Update to 0.1.9.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.9.
2019-06-29 01:34:45 +02:00
Ricardo Wurmus
2c4b38002e
gnu: r-cluster: Update to 2.1.0.
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.0.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
d42fb7d293
gnu: r-future-apply: Update to 1.3.0.
* gnu/packages/cran.scm (r-future-apply): Update to 1.3.0.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
36ff60f539
gnu: r-bootstrap: Update to 2019.6.
* gnu/packages/cran.scm (r-bootstrap): Update to 2019.6.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
93e72161ae
gnu: r-rnifti: Update to 0.11.0.
* gnu/packages/cran.scm (r-rnifti): Update to 0.11.0.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
9f84c9e843
gnu: r-rgl: Update to 0.100.24.
* gnu/packages/cran.scm (r-rgl): Update to 0.100.24.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
da4754a3b1
gnu: r-remotes: Update to 2.1.0.
* gnu/packages/cran.scm (r-remotes): Update to 2.1.0.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
a634a76a06
gnu: r-bayestestr: Update to 0.2.2.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.2.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
992e03d209
gnu: r-emmeans: Update to 1.3.5.1.
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.1.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
56ab7acb96
gnu: r-ggstance: Update to 0.3.2.
* gnu/packages/cran.scm (r-ggstance): Update to 0.3.2.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
c46a16407b
gnu: r-flextable: Update to 0.5.5.
* gnu/packages/cran.scm (r-flextable): Update to 0.5.5.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
36c5f86fab
gnu: r-sjmisc: Update to 2.8.1.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.1.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
c3447a92ee
gnu: r-prediction: Update to 0.3.14.
* gnu/packages/cran.scm (r-prediction): Update to 0.3.14.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
0d2e266220
gnu: r-officer: Update to 0.3.5.
* gnu/packages/cran.scm (r-officer): Update to 0.3.5.
2019-06-29 01:34:44 +02:00
Ricardo Wurmus
0ccb34584c
gnu: r-ggpubr: Update to 0.2.1.
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.1.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
a4bc73b236
gnu: r-ellipsis: Update to 0.2.0.
* gnu/packages/cran.scm (r-ellipsis): Update to 0.2.0.
[propagated-inputs]: Add r-rlang.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
dacf52e0a3
gnu: r-cgdsr: Update to 1.3.0.
* gnu/packages/cran.scm (r-cgdsr): Update to 1.3.0.
[propagated-inputs]: Add r-httr.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
22b2d8b97f
gnu: r-quantmod: Update to 0.4-15.
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-15.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
f5ec882390
gnu: r-tinytex: Update to 0.14.
* gnu/packages/cran.scm (r-tinytex): Update to 0.14.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
db794146ac
gnu: r-xfun: Update to 0.8.
* gnu/packages/cran.scm (r-xfun): Update to 0.8.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
1f7e8d49c3
gnu: r-performanceanalytics: Update to 1.5.3.
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.3.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
4ae5f18a25
gnu: r-abbyyr: Update to 0.5.5.
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.5.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
5b86bcfa68
gnu: r-phangorn: Update to 2.5.5.
* gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.5.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
7f17e60ab7
gnu: r-tximport: Update to 1.12.3.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.3.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
dafd290d21
gnu: r-genomicfeatures: Update to 1.36.3.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.3.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
c40bba2b36
gnu: r-genomicalignments: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.1.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
888085c36c
gnu: r-biomart: Update to 2.40.1.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.1.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
f0c244229a
gnu: r-edger: Update to 3.26.5.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.5.
2019-06-29 01:34:43 +02:00
Ricardo Wurmus
0253b5d881
gnu: r-systempiper: Update to 1.18.2.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.2.
2019-06-29 01:34:42 +02:00
Ricardo Wurmus
3e265d968b
gnu: r-rsubread: Update to 1.34.4.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.4.
2019-06-29 01:34:42 +02:00
Ricardo Wurmus
3c944fdace
gnu: r-genomicscores: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.1.
2019-06-29 01:34:42 +02:00
Ricardo Wurmus
aff3ecbfda
gnu: r-dose: Update to 3.10.2.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.2.
2019-06-29 01:34:42 +02:00