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Author SHA1 Message Date
Ricardo Wurmus a472f502e1
gnu: Add r-dofuture. 
* gnu/packages/cran.scm (r-dofuture): New variable.
 2021-09-07 13:27:52 +02:00
Ricardo Wurmus b04a2efe46
gnu: Add r-drtmle. 
* gnu/packages/cran.scm (r-drtmle): New variable.
 2021-09-07 13:27:32 +02:00
Ricardo Wurmus 84392227e3
gnu: Add r-superlearner. 
* gnu/packages/cran.scm (r-superlearner): New variable.
 2021-09-07 13:27:15 +02:00
Ricardo Wurmus 4506ef4286
gnu: Add r-gam. 
* gnu/packages/cran.scm (r-gam): New variable.
 2021-09-07 13:26:55 +02:00
Ricardo Wurmus 9899f472e6
gnu: Add r-cvauc. 
* gnu/packages/cran.scm (r-cvauc): New variable.
 2021-09-07 12:48:57 +02:00
Ricardo Wurmus 96b966a359
gnu: Add r-ggnetwork. 
* gnu/packages/cran.scm (r-ggnetwork): New variable.
 2021-09-07 12:48:52 +02:00
Ricardo Wurmus 797d0bcb1a
gnu: Add r-intergraph. 
* gnu/packages/cran.scm (r-intergraph): New variable.
 2021-09-07 12:48:46 +02:00
Ricardo Wurmus 17f3ec42ec
gnu: Add r-netrep. 
* gnu/packages/cran.scm (r-netrep): New variable.
 2021-09-07 12:48:40 +02:00
Ricardo Wurmus afb697c114
gnu: Add r-precrec. 
* gnu/packages/cran.scm (r-precrec): New variable.
 2021-09-07 12:48:29 +02:00
Ricardo Wurmus 987d0587df
gnu: Add r-cmplot. 
* gnu/packages/cran.scm (r-cmplot): New variable.
 2021-09-07 12:48:23 +02:00
Ricardo Wurmus 336e618770
gnu: Add r-nsprcomp. 
* gnu/packages/cran.scm (r-nsprcomp): New variable.
 2021-09-07 12:48:10 +02:00
Ricardo Wurmus aed1504837
gnu: Add r-biomformat. 
* gnu/packages/bioconductor.scm (r-biomformat): New variable.
 2021-09-07 12:16:47 +02:00
Ricardo Wurmus 48e300bd3f
gnu: Add r-biodb. 
* gnu/packages/bioconductor.scm (r-biodb): New variable.
 2021-09-07 12:16:41 +02:00
Ricardo Wurmus 2c8e3595e3
gnu: Add r-biocdockermanager. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): New variable.
 2021-09-07 12:16:33 +02:00
Ricardo Wurmus 7ca0a0f0e7
gnu: Add r-biocthis. 
* gnu/packages/bioconductor.scm (r-biocthis): New variable.
 2021-09-07 12:08:17 +02:00
Ricardo Wurmus fd5372e40f
gnu: Add r-basilisk. 
* gnu/packages/bioconductor.scm (r-basilisk): New variable.
 2021-09-07 12:08:13 +02:00
Ricardo Wurmus dde984ca19
gnu: Add r-basilisk-utils. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): New variable.
 2021-09-07 12:08:06 +02:00
Ricardo Wurmus c9d545ab01
gnu: Add r-dir-expiry. 
* gnu/packages/bioconductor.scm (r-dir-expiry): New variable.
 2021-09-07 12:07:59 +02:00
Ricardo Wurmus b76b47ebe4
gnu: Add r-genetclassifier. 
* gnu/packages/bioconductor.scm (r-genetclassifier): New variable.
 2021-09-07 12:01:25 +02:00
Ricardo Wurmus e43c6d2e4a
gnu: Add r-minet. 
* gnu/packages/bioconductor.scm (r-minet): New variable.
 2021-09-07 12:01:16 +02:00
Ricardo Wurmus 5143f3852d
gnu: Add r-biobtreer. 
* gnu/packages/bioconductor.scm (r-biobtreer): New variable.
 2021-09-07 12:01:10 +02:00
Ricardo Wurmus a59aee1330
gnu: Add r-bgeedb. 
* gnu/packages/bioconductor.scm (r-bgeedb): New variable.
 2021-09-07 12:01:03 +02:00
Ricardo Wurmus 26da032d5b
gnu: Add r-org-bt-eg-db. 
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): New variable.
 2021-09-07 12:00:53 +02:00
Ricardo Wurmus e658cde524
gnu: Add r-chk. 
* gnu/packages/cran.scm (r-chk): New variable.
 2021-09-07 12:00:46 +02:00
Ricardo Wurmus af81591375
gnu: Add r-bgeecall. 
* gnu/packages/bioconductor.scm (r-bgeecall): New variable.
 2021-09-07 11:44:33 +02:00
Ricardo Wurmus ec997158db
gnu: Add r-rslurm. 
* gnu/packages/cran.scm (r-rslurm): New variable.
 2021-09-07 11:44:33 +02:00
Ricardo Wurmus 62381dce86
gnu: Add r-beclear. 
* gnu/packages/bioconductor.scm (r-beclear): New variable.
 2021-09-07 11:44:33 +02:00
Nicolas Goaziou 4867738c7f
gnu: emacs-dap-mode: Update to 0.7. 
* gnu/packages/emacs-xyz.scm (emacs-dap-mode): Update to 0.7.
 2021-09-07 09:44:09 +02:00
Nicolas Goaziou d905c34766
gnu: emacs-lsp-mode: Move all client libraries at top-level. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode)[arguments]<#:phases>: Move all
client libraries at top-level.  <#:emacs>: Use full Emacs for libxml support.
 2021-09-07 09:42:45 +02:00
Nicolas Goaziou 4610f44efd
gnu: emacs-lsp-mode: Add clients. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode)[arguments]: Also install
LSP-mode clients.
 2021-09-07 09:28:45 +02:00
Nicolas Goaziou 8b81c6861f
gnu: emacs-lsp-ivy: Update to 0.5. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-ivy): Update to 0.5.
 2021-09-07 09:07:37 +02:00
Nicolas Goaziou 5e5516f833
gnu: emacs-lsp-ui: Update to 8.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-ui): Update to 8.0.0.
 2021-09-07 09:05:31 +02:00
Nicolas Goaziou 8ffbf2567b
gnu: emacs-lsp-treemacs: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-treemacs): Update to 0.4.
 2021-09-07 08:35:38 +02:00
Nicolas Goaziou 9cf8786aed
gnu: emacs-lsp-mode: Update to 8.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 8.0.0.
 2021-09-07 08:34:03 +02:00
Leo Famulari 8b2b027df9
gnu: Add linux-libre 5.14.1. 
* gnu/packages/linux.scm (linux-libre-5.14-version, deblob-scripts-5.14,
linux-libre-5.14-pristine-source, linux-libre-5.14-source,
linux-libre-headers-5.14, linux-libre-5.14): New variables.
* gnu/packages/aux-files/linux-libre/5.14-arm.conf,
gnu/packages/aux-files/linux-libre/5.14-arm64.conf,
gnu/packages/aux-files/linux-libre/5.14-i686.conf,
gnu/packages/aux-files/linux-libre/5.14-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
 2021-09-06 22:27:43 -04:00
Leo Famulari 36e186d333
gnu: linux-libre 4.4: Update to 4.4.283. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.283.
(linux-libre-4.4-gnu-revision): Update to gnu1.
(linux-libre-4.4-pristine-source, deblob-scripts-4.4): Update hash.
 2021-09-06 22:16:33 -04:00
Leo Famulari def683d3dc
gnu: linux-libre 4.9: Update to 4.9.282. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.282.
(linux-libre-4.9-gnu-revision): Update to gnu1.
(linux-libre-4.9-pristine-source, deblob-scripts-4.9): Update hashes.
 2021-09-06 22:16:33 -04:00
Leo Famulari 4f30ae4284
gnu: linux-libre 4.14: Update to 4.14.246. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.246.
(linux-libre-4.14-gnu-revision): Update to gnu1.
(linux-libre-4.14-pristine-source, deblob-scripts-4.14): Update hashes.
 2021-09-06 22:16:33 -04:00
Leo Famulari adb520b1fb
gnu: linux-libre 4.19: Update to 4.19.206. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.206.
(linux-libre-4.19-gnu-revision): Update to gnu1.
(linux-libre-4.19-pristine-source, deblob-scripts): Update hashes.
 2021-09-06 22:16:33 -04:00
Leo Famulari ec51a33707
gnu: linux-libre 5.4: Update to 5.4.144. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.144.
(linux-libre-5.4-gnu-revision): Update to gnu1.
(linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.
 2021-09-06 22:16:32 -04:00
Leo Famulari cb3b77aaa5
gnu: linux-libre 5.10: Update to 5.10.62. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.62.
(linux-libre-5.10-gnu-revision): Update to gnu1.
(linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.
 2021-09-06 22:16:32 -04:00
Leo Famulari 3cf518b5eb
gnu: linux-libre: Update to 5.13.14. 
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.14.
(linux-libre-5.13-gnu-revision): Update to gnu1.
(linux-libre-5.13-pristine-source, deblob-scripts-5.13): Update hashes.
 2021-09-06 22:16:32 -04:00
Leo Famulari a185a02f54
gnu: linux-libre: Parameterize the revision of the deblob scripts. 
For more information about this:
https://lists.gnu.org/archive/html/guix-devel/2021-09/msg00054.html

* gnu/packages/linux.scm (linux-libre-5.13-gnu-revision,
linux-libre-5.10-gnu-revision, linux-libre-5.4-gnu-revision,
linux-libre-4.19-gnu-revision, linux-libre-4.14-gnu-revision,
linux-libre-4.9-gnu-revision, linux-libre-4.4-gnu-revision,
linux-libre-gnu-revision, linux-libre-lts-gnu-revision): New variables.
(linux-libre-deblob-scripts, linux-libre-urls, make-linux-libre-headers,
make-linux-libre-headers*, make-linux-libre, make-linux-libre*): Add a
gnu-revision argument.
(deblob-scripts-5.13, deblob-scripts-5.10, deblob-scripts-5.4,
deblob-scripts-4.19, deblob-scripts-4.14, deblob-scripts-4.9,
deblob-scripts-4.4): Set the gnu-revision.
(linux-libre-headers-5.13, linux-libre-headers-5.10, linux-libre-headers-5.4,
linux-libre-headers-4.19, linux-libre-headers-4.14, linux-libre-headers-4.9,
linux-libre-headers-4.4): Likewise.
(linux-libre-5.10, linux-libre-5.4, linux-libre-4.19, linux-libre-4.14,
linux-libre-4.9, linux-libre-4.4, linux-libre-arm-generic,
linux-libre-arm-generic-5.10, linux-libre-arm-generic-5.4,
linux-libre-arm-generic-4.19, linux-libre-arm-generic-4.14,
linux-libre-arm-omap2plus, linux-libre-arm-omap2plus-4.19,
linux-libre-arm-omap2plus-4.14, linux-libre-arm64-generic,
linux-libre-arm64-generic-5.10, linux-libre-arm64-generic-5.4,
linux-libre-riscv64-generic, linux-libre-mips64el-fuloong2e,
linux-libre-with-bpf): Likewise.
(linux-libre-headers-5.4.20): Set the gnu-revision, taking care not to alter the
derivation.
 2021-09-06 22:16:32 -04:00
Xinglu Chen 49922efb11
gnu: ocaml-ppxlib: Update to 0.23.0. 
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.23.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-09-06 23:27:40 +02:00
Xinglu Chen 550f4aa682
gnu: ocaml-ppx-variants-conv: Patch for building with ocaml-ppxlib. 
The patch will make it build when building it with ocaml-ppxlib@0.23.0.

* gnu/packages/patches/ocaml-ppx-variants-ppxlib-api-change.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): Apply the patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-09-06 23:27:40 +02:00
Xinglu Chen b60a7f049c
gnu: ocamlformat: Update to 0.19.0. 
* gnu/packages/ocaml.scm (ocamlformat): Update to 0.19.0.
[propagated-inputs]: Add ocaml-odoc-parser.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-09-06 23:27:40 +02:00
Xinglu Chen c80e71a586
gnu: ocaml-ppx-optcomp: Update to 0.14.3. 
* gnu/packages/ocaml.scm (ocaml-ppx-optcomp): Update to 0.14.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-09-06 23:27:40 +02:00
Ludovic Courtès 5fc9d71bac
gnu: ocaml-markup@0.8.0: Use 'ocaml-ounit', not 'ocaml-ounit2'. 
* gnu/packages/ocaml.scm (ocaml-markup0.8.0)[native-inputs]: New field.
 2021-09-06 23:27:40 +02:00
Ludovic Courtès 153fd217b6
swh: Add 'lookup-snapshot-branch'. 
* guix/swh.scm (<snapshot>)[id]: New field.
(snapshot-url, lookup-snapshot-branch): New procedures.
 2021-09-06 22:58:12 +02:00
Ludovic Courtès 63ed618e33
swh: <revisions> accept null 'date' fields. 
* guix/swh.scm (maybe-null): New procedure.
(<revision>)[date]: Use it.
 2021-09-06 22:58:12 +02:00