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Author SHA1 Message Date
Julien Lepiller 45bc66dbe9
gnu: coq-flocq: Update to 3.4.2. 
* gnu/packages/coq.scm (coq-flocq): Update to 3.4.2.
 2021-11-21 19:26:26 +01:00
Ludovic Courtès 0154fac42a
gnu: ghc: Depend on 'git-minimal/fixed'. 
* gnu/packages/haskell.scm (ghc-8.8): Replace GIT/FIXED by
GIT-MINIMAL/FIXED.
* gnu/packages/version-control.scm (git/fixed): Remove.
 2021-11-21 18:37:50 +01:00
Ludovic Courtès 48d38125c2
gnu: blender: Update to 2.93.6. 
* gnu/packages/graphics.scm (blender): Update to 2.93.6.
 2021-11-21 18:37:50 +01:00
Ludovic Courtès 3f66b4c266
gnu: lyx: Remove reference to '%outputs'. 
* gnu/packages/tex.scm (lyx)[arguments]: Rewrite as gexps.  Refer
to #$output instead of '%outputs', which 'qt-build-system' no longer
defines.
 2021-11-21 18:37:50 +01:00
John Kehayias 85de88f1ad
gnu: emacs-xwidgets{,-next-pgtk}: Use webkitgtk-with-libsoup2. 
* gnu/packages/emacs.scm (emacs-xwidgets, emacs-next-pgtk)[inputs]:
Replace webkitgtk with webkitgtk-with-libsoup2.
* gnu/packages/webkit.scm (webkitgtk-with-libsoup2): Add further
information about where this package is used and upstream tracker for
libsoup3.
 2021-11-21 16:43:12 +01:00
Julien Lepiller 29e9dc49cc
gnu: camlboot: Increase max-silent-time. 
* gnu/packages/ocaml.scm (camlboot)[properties]: Set max-silent-time to
10 hours.
 2021-11-21 16:20:57 +01:00
Liliana Marie Prikler f0a30bf8aa
gnu: ibus-theme-tools: Do not delete check phase. 
* gnu/packages/ibus.scm (ibus-theme-tools)[#:tests?]: Add with value #f and
an appropriate comment.
[#:phases]: Drop.
 2021-11-21 15:17:32 +01:00
Songlin Jiang 6972c4f212
gnu: Add ibus-theme-tools. 
* gnu/packages/ibus.scm (ibus-theme-tools): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-21 15:10:39 +01:00
Songlin Jiang 7cc2f02281
gnu: Add gnome-shell-extension-customize-ibus. 
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-customize-ibus): New
variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-21 15:08:54 +01:00
Maxim Cournoyer 01ea70a29c
gnu: linux-libre: Make build reproducible. 
Fixes <https://issues.guix.gnu.org/24028>.

* gnu/packages/linux.scm (make-linux-libre*): Remove trailing #t.
[phases]{configure}: Set KBUILD_BUILD_USER and KBUILD_BUILD_HOST environment
variables.
 2021-11-21 09:08:52 -05:00
Vivien Kraus a0e5af4593
gnu: nautilus: Update to 41.0. 
* gnu/packages/gnome.scm (nautilus): Upgrade to 41.0.
* gnu/packages/gnome.scm (nautilus) [arguments]: Use meson 0.59.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-21 09:08:52 -05:00
Vivien Kraus fcf60dad58
gnu: gnome-autoar: Update to 0.4.1. 
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.4.1.
* gnu/packages/gnome.scm (gnome-autoar) [build-system]: Switch to meson.
* gnu/packages/gnome.scm (gnome-autoar) [native-inputs]: Add glib:bin for
glib-mkenums.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-21 09:08:52 -05:00
Timothy Sample 404c7eedfe
gnu: gnome-session: Restore elogind support. 
* gnu/packages/patches/gnome-session-support-elogind.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/gnome.scm (gnome-session)[source]: Use it.
[arguments]: Add "-Delogind=true" to #:configure-flags; remove
phases that patch in old-style elogind support.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-21 09:08:51 -05:00
Mathieu Othacehe 72501a555e
gnu: genimage: Update to 14-1.11bb044. 
Update to commit 11bb04455 to integrate fixes related to new genext2fs and
e2fsprogs versions.

* gnu/packages/genimage.scm (genimage): Update to 14-1.11bb044.
[arguments]{fix-failing-tests}: Update it.
* gnu/packages/patches/genimage-mke2fs-test.patch: Update it.
 2021-11-21 11:22:45 +00:00
Jaft 9bfbba8af5
gnu: Add gsimplecal. 
* gnu/packages/calendar.scm (gsimplecal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-21 09:43:23 +01:00
Ricardo Wurmus e74bcbc64f
gnu: python-scanpy: Set PYTHONPATH variable. 
This is a follow-up to commit 664721422c.

* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Set PYTHONPATH
variable during the build as GUIX_PYTHONPATH does not have the intended
effect.
 2021-11-21 09:07:50 +01:00
Ricardo Wurmus 6c9bbf8071
gnu: python-scanpy: Update to 1.8.2. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.2.
[arguments]: Disable test_clustermap test.
 2021-11-21 09:07:50 +01:00
Kaelyn Takata 4c4d53ed52
gnu: xfce-weather-plugin: Fix build by depending on libsoup2. 
* gnu/packages/xfce.scm (xfce-weather-plugin)[inputs]: Replace libsoup with
libsoup-minimal-2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-21 09:07:50 +01:00
Jack Hill 9f8a4760e8
gnu: python-libvirt: Update to 7.9.0. 
* gnu/packages/virtualization.scm (python-libvirt): Update to 7.9.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-21 09:07:50 +01:00
Ricardo Wurmus 00127cbca7
gnu: python-seaborn: Update to 0.11.2. 
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.11.2.
 2021-11-21 09:07:49 +01:00
Maxim Cournoyer d8b429ddb7
gnu: emacs-elpy: More aggressively trim nondeterministic tests. 
More failing tests keep appearing sparingly, a few at a time.  With the
following change, the build succeeded 20 rounds.

* gnu/packages/emacs-xyz.scm (emacs-elpy)
[phases]{disable-broken-tests}: Disable whole tests families affected by
nondeterministic failures rather than individual tests.
 2021-11-20 22:29:53 -05:00
Julien Lepiller 348f1f7cb5
gnu: camlboot: Update to latest commit. 
* gnu/packages/ocaml.scm (camlboot): Update to latest commit.
 2021-11-21 04:14:49 +01:00
Ricardo Wurmus 1a9665743b
gnu: perl-cworld-dekker: Use GUIX_PYTHONPATH. 
* gnu/packages/bioinformatics.scm (perl-cworld-dekker)[arguments]: Use
GUIX_PYTHONPATH.
 2021-11-21 00:40:34 +01:00
Ricardo Wurmus 664721422c
gnu: python-scanpy: Use GUIX_PYTHONPATH. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
 2021-11-21 00:39:57 +01:00
Ricardo Wurmus a22fb2d164
gnu: python-numpy: Alias to python-numpy-1.20. 
Numpy 1.20 is required by numba and umap-learn.  Attempts to rename numpy 1.20
to allow it to coexist with numpy 1.21 in the same environment have not been
successful.

* gnu/packages/python-xyz.scm (python-numpy): Rename to...
(python-numpy-next): ...this variable.
(python2-numpy): Use python-numpy-next package as parent.
(python-numpy-1.20): Inherit from python-numpy-next.
(python-numpy): New variable pointing to python-numpy-1.20.
(python-numba)[propagated-inputs]: Replace python-numpy-1.20 with
python-numpy.
 2021-11-21 00:39:09 +01:00
Ricardo Wurmus 55870e86d9
gnu: multiqc: Remove sanity check. 
* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Delete 'sanity-check phase.
 2021-11-21 00:39:09 +01:00
Ricardo Wurmus e2ca652c98
gnu: multiqc: Use GUIX_PYTHONPATH. 
* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Replace PYTHONPATH
with GUIX_PYTHONPATH.
 2021-11-21 00:39:05 +01:00
Ludovic Courtès b2bfedcdb3
gnu: libmp4v2: Build with '-std=c++03'. 
* gnu/packages/video.scm (libmp4v2)[arguments]: Add #:configure-flags.
 2021-11-20 23:11:45 +01:00
Ludovic Courtès 27ceda472a
gnu: python-qtconsole: Add dependency on python-pyqt. 
* gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Add
PYTHON-PYQT.
 2021-11-20 23:11:45 +01:00
Ludovic Courtès aaf210888c
vm: <virtual-machine> defaults to using 'qemu-minimal'. 
'qemu-minimal' is enough for system tests, which is the main (only?) use
of <virtual-machine>.

* gnu/system/vm.scm (<virtual-machine>)[qemu]: Default to QEMU-MINIMAL.
 2021-11-20 23:11:44 +01:00
Ludovic Courtès ce67634629
gnu: tcp-wrappers: Allow compilation with glibc 2.33. 
* gnu/packages/networking.scm (tcp-wrappers)[source]: Add 'snippet'.
 2021-11-20 23:11:44 +01:00
Ludovic Courtès 83010a08bc
gnu: grafx2: Build with '-fcommon'. 
* gnu/packages/game-development.scm (grafx2)[arguments]: Add '-fcommon'
to #:make-flags.
 2021-11-20 23:11:44 +01:00
Ludovic Courtès c34bb6b310
gnu: grafx2: Add 'file-name' field to source. 
Without a file name ending in ".tgz" (or similar), the 'unpack' phase
wouldn't extract it (as implemented in commit
cfcead2e51).

* gnu/packages/game-development.scm (grafx2)[source]: Add 'file-name'
field.
 2021-11-20 23:11:44 +01:00
Julien Lepiller 0846e7d326
gnu: Add ocaml-charinfo-width. 
* gnu/packages/ocaml.scm (ocaml4.07-charinfo-width): Replace with...
(ocaml-charinfo-width): ...this. Use latest ocaml package.
 2021-11-20 19:39:57 +01:00
Julien Lepiller f9bf7de5b4
gnu: Add ocaml-gsl. 
* gnu/packages/ocaml.scm (ocaml4.07-gsl): Replace with...
(ocaml-gsl): ...this. Use latest ocaml package.
(ocaml4.07-gsl-1): Adapt accordingly.
 2021-11-20 19:39:54 +01:00
Julien Lepiller 0481810ebf
gnu: Add ocaml-fftw3. 
* gnu/packages/ocaml.scm (ocaml4.07-fftw3): Replace with...
(ocaml-fftw3) ...this. Use latest ocaml package.
 2021-11-20 19:39:52 +01:00
Julien Lepiller e9d3f3656b
gnu: Add ocaml-lacaml. 
* gnu/packages/ocaml.scm (ocaml4.07-lacaml): Replace with...
(ocaml-lacaml): ...this.  Use latest ocaml package.
 2021-11-20 19:39:25 +01:00
John Kehayias c51667d52e
gnu: ledger: Remove failing test output. 
* gnu/packages/finance.scm (ledger)[source]: Add snippet to remove a failing
  test.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-20 19:23:50 +01:00
Guillaume Le Vaillant 89eb1f2a76
gnu: sdrangel: Update to 6.17.3. 
* gnu/packages/radio.scm (sdrangel): Update to 6.17.3.
  [arguments]: Add 'fix-boost-compatibility' phase.
 2021-11-20 19:18:44 +01:00
Leo Famulari 40239e23e8
gnu: linux-libre 5.10: Update to 5.10.80. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.80.
(linux-libre-5.10-pristine-source): Update hash.
 2021-11-20 13:15:11 -05:00
Leo Famulari d2f5bc7da8
gnu: linux-libre: Update to 5.14.20. 
* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.20.
(linux-libre-5.14-pristine-source): Update hash.
 2021-11-20 13:15:07 -05:00
Guillaume Le Vaillant 4d02165992
gnu: opencpn: Update to 5.2.4. 
* gnu/packages/geo.scm (opencpn): Update to 5.2.4.
  [arguments]: Update 'configure-flag' and 'fix-build' phase.
 2021-11-20 18:23:15 +01:00
Julien Lepiller 0a4656f1c1
gnu: ocaml-version: Update to 3.4.0. 
* gnu/packages/ocaml.scm (ocaml-version): Update to 3.4.0.
 2021-11-20 17:09:03 +01:00
Julien Lepiller 4378eb9a15
gnu: ocaml-tyxml: Update to 4.5.0. 
* gnu/packages/ocaml.scm (ocaml-tyxml): Update to 4.5.0.
 2021-11-20 17:08:55 +01:00
Julien Lepiller c2242284ab
gnu: ocaml-topkg: Update to 1.0.4. 
* gnu/packages/ocaml.scm (ocaml-topkg): Update to 1.0.4.
 2021-11-20 17:08:50 +01:00
Julien Lepiller 972c6fe87b
gnu: ocaml-stdlib-shims: Update to 0.3.0. 
* gnu/packages/ocaml.scm (ocaml-stdlib-shims): Update to 0.3.0.
 2021-11-20 17:08:47 +01:00
Julien Lepiller 5a3fcf0cac
gnu: ocaml-sedlex: Update to 2.4. 
* gnu/packages/ocaml.scm (ocaml-sedlex): Update to 2.4.
[native-inputs]: Remove ocamlbuild.
[propagated-inputs]: Remove ocaml-ppx-tools-versioned.
(ocaml4.07-sedlex)[propagated-inputs]: Add ocaml-ppx-tools-versioned.
 2021-11-20 17:08:37 +01:00
Julien Lepiller 40f7eb975b
gnu: ocaml-qtest: Update to 2.11.2. 
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.11.2.
 2021-11-20 17:08:33 +01:00
Julien Lepiller b0e76b0828
gnu: ocaml-qcheck: Update to 0.18. 
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.18.
* gnu/packages/patches/ocaml-qcheck-fix-test-whitespace.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-11-20 17:08:06 +01:00
Julien Lepiller 0df82727a6
gnu: ocaml-ppx-variants-conv: Update to 0.14.2. 
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): Update to 0.14.2.
[origin]: Remove patch.
* gnu/packages/patches/ocaml-ppx-variants-ppxlib-api-change.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-11-20 17:07:50 +01:00