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Author SHA1 Message Date
Ricardo Wurmus dca5a8143f
gnu: r-tidytree: Update to 0.3.2. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.2.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:03 +01:00
Ricardo Wurmus d520e4c942
gnu: r-rcppparallel: Update to 5.0.0. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.0.
 2020-03-12 15:15:03 +01:00
Ricardo Wurmus 69a3c4ce51
gnu: r-sjplot: Update to 2.8.3. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.3.
[propagated-inputs]: Remove r-forcats.
[native-inputs]: Remove r-knitr.
 2020-03-12 15:15:03 +01:00
Ricardo Wurmus cd26e5dee8
gnu: r-catdap: Update to 1.3.5. 
* gnu/packages/cran.scm (r-catdap): Update to 1.3.5.
 2020-03-12 15:15:03 +01:00
Ricardo Wurmus f7306e465e
gnu: r-vim: Update to 5.1.1. 
* gnu/packages/cran.scm (r-vim): Update to 5.1.1.
 2020-03-12 15:15:03 +01:00
Ricardo Wurmus 117270fb51
gnu: r-vctrs: Update to 0.2.4. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.4.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:03 +01:00
Ricardo Wurmus 6bd6097ed5
gnu: r-cicero: Update to 1.4.4. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0754fefb75
gnu: r-ggcyto: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus e0061f5125
gnu: r-mlinterfaces: Update to 1.66.5. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0b692ef2c6
gnu: r-qtl: Update to 1.46-2. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.46-2.
 2020-03-12 15:15:02 +01:00
Pierre Neidhardt 04ff192ec4
gnu: Add hyperledger-iroha. 
This package was co-authored with Efraim Flashner <efraim@flashner.co.il>

* gnu/packages/hyperledger.scm (hyperledger-iroha): New variable.
 2020-03-12 15:34:28 +02:00
Efraim Flashner f204d155e3
gnu: Add boost-1.69. 
* gnu/packages/boost.scm (boost-1.69): New hidden package.
 2020-03-12 15:34:28 +02:00
Pierre Neidhardt 37109658a5
gnu: Add hyperledger-iroha-ed25519. 
* gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519): New variable.
 2020-03-12 15:34:28 +02:00
Efraim Flashner d56d3ae704
gnu: grpc: Build shared libraries. 
* gnu/packages/machine-learning.scm (grpc)[outputs]: Add static.
[arguments]: Copy configure-flags from cmake-build-system. Add custom
phases 'configure-shared, 'install-shared-libraries and 'move-static-libs
to build shared libs and move static libs to their own output.
(tensorflow)[native-inputs]: Add grpc:static.
 2020-03-12 15:34:28 +02:00
Efraim Flashner b0aa58d8f1
gnu: python2-jupyter-console: Build with python2. 
* gnu/packages/python-xyz.scm (python2-jupyter-console)[arguments]: Add
python keyword, set to python-2.
 2020-03-12 15:34:28 +02:00
Efraim Flashner e8588a7847
gnu: python-jupyter-console: Specify python2 variant. 
* gnu/packages/python-xyz.scm (python-jupyter-console)[properties]: New
field. Specify python2-jupyter-console as python2 variant.
 2020-03-12 15:34:27 +02:00
Ricardo Wurmus a595399230
services: mumi-service-type: Update to latest version of mumi. 
* gnu/services/web.scm (%mumi-activation): Create /var/mumi/db.
(mumi-shepherd-services): Add service for mumi worker.
 2020-03-12 12:47:45 +01:00
Ricardo Wurmus c107e50a0e
gnu: mumi: Update to 0.0.0-7.6653e2d. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-7.6653e2d.
[inputs]: Add guile-sqlite3.
 2020-03-12 12:47:45 +01:00
Ricardo Wurmus e4cdadc18d
gnu: r-cairo: Update to 1.5-11. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-11.
 2020-03-12 12:47:45 +01:00
Felix Gruber 0a703c0486
gnu: dune-istl: Build with suitesparse 
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber f1f9466e33
gnu: Add dune-subgrid 
* gnu/packages/maths.scm (dune-subgrid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber 07ebb75d17
gnu: Add dune-uggrid. 
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber a669f6e27b
gnu: dune-*: set up MPI for tests 
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Ludovic Courtès f7537e30b8
inferior: Distinguish inferior exceptions. 
This avoids ambiguities when looking at a backtrace where the exception
was actually thrown by an inferior in a very different context.

* guix/inferior.scm (&inferior-exception): New condition type.
(read-repl-response): Add optional 'inferior' parameter.  Raise
'&inferior-exception' instead of rethrowing to KEY when receiving an
'exception' message.
(read-inferior-response): Pass INFERIOR to 'read-repl-response'.
* tests/inferior.scm ("&inferior-exception"): New test.
 2020-03-12 11:52:38 +01:00
Ludovic Courtès c00ae79cca
import: cpan: Gracefully handle missing projects. 
* guix/import/cpan.scm (cpan-fetch): Check whether 'json-fetch' returns #f.
 2020-03-12 11:52:38 +01:00
Ludovic Courtès 2d0409a4a2
import: utils: Remove 'assoc-ref*'. 
* guix/import/utils.scm (assoc-ref*): Remove.
 2020-03-12 11:52:37 +01:00
Ludovic Courtès 7657e61d6b
import: pypi: Rewrite to use 'define-json-mapping'. 
* guix/import/pypi.scm (non-empty-string-or-false): New procedure.
(<pypi-project>, <project-info>, <distribution>): New record types.
(pypi-fetch): Call 'json->pypi-project'.
(latest-source-release, latest-wheel-release): Use the new record
accessors instead of 'assoc-ref*'.
(pypi->guix-package, latest-release): Likewise.
* tests/pypi.scm (test-json): Add mandatory fields.
 2020-03-12 11:52:37 +01:00
Ludovic Courtès a20cfe71e9
gnu: guile-next: Enable JIT on ARMv7. 
JIT support on ARMv7 is fixed by "guile-3.0-crash.patch".

* gnu/packages/guile.scm (guile-3.0)[arguments]: Remove.
 2020-03-12 11:52:21 +01:00
Guillaume Le Vaillant ec73c90ee3
gnu: Add virtualpg. 
* gnu/packages/geo.scm (virtualpg): New variable.
 2020-03-12 10:08:45 +01:00
Guillaume Le Vaillant 69b03ecd95
gnu: jgmenu: Update to 4.1.0. 
* gnu/packages/xdisorg.scm (jgmenu): Update to 4.1.0.
 2020-03-12 10:08:45 +01:00
Guillaume Le Vaillant 034d9544e2
gnu: udiskie: Update to 2.1.0. 
* gnu/packages/freedesktop.scm (udiskie): Update to 2.1.0.
 2020-03-12 10:08:45 +01:00
Guillaume Le Vaillant 0aedcf4bc3
gnu: txr: Update to 233. 
* gnu/packages/lisp.scm (txr): Update to 233.
 2020-03-12 10:08:45 +01:00
Danny Milosavljevic 04b4c43232
doc: Fix description for "guix package -A". 
* doc/guix.texi (Invoking guix package): Fix description for "guix package -A".
 2020-03-12 09:55:20 +01:00
Efraim Flashner d8ba1135eb
gnu: python2-ipython: Fix build. 
* gnu/packages/python-xyz.scm (python2-ipython)[arguments]: Adjust
skipped tests.
 2020-03-12 10:25:42 +02:00
Tobias Geerinckx-Rice bf8ee1c504
gnu: xlockmore: Update to 5.62. 
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.62.
 2020-03-12 05:10:21 +01:00
Tobias Geerinckx-Rice 81166ee488
gnu: xlockmore: Use HTTPS home page. 
* gnu/packages/xdisorg.scm (xlockmore)[home-page]: Use HTTPS.
 2020-03-12 04:57:46 +01:00
Tobias Geerinckx-Rice cf580e5ebf
gnu: mame: Use HTTPS home page. 
* gnu/packages/emulators.scm (mame)[home-page]: Use HTTPS.
 2020-03-12 04:57:44 +01:00
Tobias Geerinckx-Rice a30f20d49c
gnu: dosbox: Use HTTPS home page. 
* gnu/packages/emulators.scm (dosbox)[home-page]: Use HTTPS.
 2020-03-12 04:57:43 +01:00
Tobias Geerinckx-Rice f930814afa
gnu: Add gitless. 
* gnu/packages/version-control.scm (gitless): New public variable.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-03-12 04:57:42 +01:00
Tobias Geerinckx-Rice 62f6f9d99f
gnu: faust: Use HTTPS home page. 
* gnu/packages/audio.scm (faust)[home-page]: Use HTTPS.
 2020-03-12 04:57:42 +01:00
Tobias Geerinckx-Rice 286ab9d3f5
gnu: rsound: Use HTTPS home page. 
* gnu/packages/audio.scm (rsound)[home-page]: Use HTTPS.
 2020-03-12 04:57:42 +01:00
Tobias Geerinckx-Rice dd42a2f391
gnu: libgme: Update to 0.6.3. 
* gnu/packages/music.scm (libgme): Update to 0.6.3.
 2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice b5d32fb9dd
gnu: xmobar: Update to 0.33. 
* gnu/packages/wm.scm (xmobar): Update to 0.33.
 2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice 094afc97c6
gnu: gptfdisk: Use HTTPS home page. 
* gnu/packages/disk.scm (gptfdisk)[home-page]: Use HTTPS.
 2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice 7247b84195
gnu: ephoto: Update source and home page URIs. 
* gnu/packages/enlightenment.scm (ephoto)[source]: Remove dead URI.
[home-page]: Follow (HTTPS) redirection.
 2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice 32df41beef
gnu: s6: Update to 2.9.1.0. 
* gnu/packages/skarnet.scm (s6): Update to 2.9.1.0.
 2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice fe6cfa9943
gnu: simple-scan: Update to 3.36.0. 
* gnu/packages/gnome.scm (simple-scan): Update to 3.36.0.
 2020-03-12 04:57:40 +01:00
Tobias Geerinckx-Rice dd8cf0097e
gnu: picprog: Use HTTPS home page. 
* gnu/packages/embedded.scm (picprog)[home-page]: Use HTTPS.
 2020-03-12 04:57:40 +01:00
Tobias Geerinckx-Rice 0308944ab0
gnu: java-snappy: Don't use unstable tarball. 
* gnu/packages/java-compression.scm (java-snappy)[source]: Use GIT-FETCH
and GIT-FILE-NAME.
[arguments]: Add ‘make-git-checkout-writable’ phase.
 2020-03-12 04:57:40 +01:00
Tobias Geerinckx-Rice ca0fe294d6
gnu: java-snappy: Update to 1.1.7.3. 
* gnu/packages/java-compression.scm (java-snappy): Update to 1.1.7.3.
 2020-03-12 04:57:39 +01:00