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4490 commits

Author SHA1 Message Date
Ricardo Wurmus dbdfe51598 gnu: python-numpy: Build against OpenBLAS.
* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
  "atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
  OpenBLAS.

Modified-By: Mark H Weaver <mhw@netris.org>
2015-06-07 17:30:40 -04:00
Mark H Weaver 716e20a2bc gnu: icecat: Update to 31.7.0-gnu1.
* gnu/packages/patches/icecat-CVE-2015-0797.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1.  Remove patches.
2015-06-06 08:02:45 -04:00
Mark H Weaver 8850303e76 gnu: tor: Update to 0.2.6.8.
* gnu/packages/tor.scm (tor): Update to 0.2.6.8.
  [native-inputs]: Add python-2.
2015-06-06 00:51:10 -04:00
Ludovic Courtès 24e02c28fb system: 'hosts-file' is now a file-like object.
Partly fixes <http://bugs.gnu.org/20720>.
Reported by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (default-/etc/hosts): Change 'text-file' to 'plain-file'.
  (maybe-file->monadic): New procedure.
  (operating-system-etc-directory): Use it.
* doc/guix.texi (operating-system Reference, Networking Services): Adjust
  accordingly.
2015-06-05 22:41:55 +02:00
Ludovic Courtès 847658395e system: 'sudoers' is now a file-like object.
Partly fixes <http://bugs.gnu.org/20720>
Reported by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (etc-directory): Change default #:sudoers value to a
  'plain-file'.  Don't bind it.  Remove #~#$.
  (maybe-string->file): New procedure.
  (operating-system-etc-directory): Use it.
  (%sudoers-specification): Use 'plain-file'.
* doc/guix.texi (operating-system Reference): Adjust accordingly.
2015-06-05 20:22:47 +02:00
Ludovic Courtès 97cc51f876 gnu: Add magit-svn.
* gnu/packages/emacs.scm (magit-svn): New variable.
2015-06-05 12:13:38 +02:00
Mark H Weaver 1973183b63 gnu: Add coq.
* gnu/packages/ocaml.scm (coq): New variable.
2015-06-05 00:58:53 -04:00
Mark H Weaver d6b7b5edec gnu: Add hevea.
* gnu/packages/ocaml.scm (hevea): New variable.
2015-06-05 00:58:53 -04:00
Mark H Weaver 83f4dc36e2 gnu: Add camlp5.
* gnu/packages/ocaml.scm (camlp5): New variable.
2015-06-05 00:58:53 -04:00
Mark H Weaver 69b8f08cbd gnu: ocaml: Update to 4.02.1.
* gnu/packages/ocaml.scm (ocaml)[version]: Update to 4.02.1.
  [source]: Use 'version-major+minor'.  Use .xz tarball.
  [home-page]: Update URI.
  [license]: gpl2 -> lgpl2.0.
  [inputs]: Add libx11, gcc:lib, and zlib.  Remove perl.
  [native-inputs]: New field, with perl and pkg-config.
  [arguments]: In #:modules, remove (srfi srfi-1), add (web server).  Use
  'modify-phases'.  Enable parallel build.  Add 'patch-/bin/sh-references' and
  'prepare-socket-test' phases.  Rename 'check-after-install' phase to
  'check'.  Use 'with-directory-excursion' in 'check' phase.  Remove unused
  keyword arguments from custom phases.
2015-06-05 00:58:53 -04:00
宋文武 4a79e256f0 gnu: Add devhelp.
* gnu/packages/gnome.scm (devhelp): New variable.
2015-06-05 12:46:20 +08:00
宋文武 4becc79273 gnu: guile-opengl: Patch dynamic-link call for 'libGLU' to glu.
* gnu/packages/gl.scm (guile-opengl)[inputs]: Add glu.
  [arguments]: Patch dynamic-link call for 'libGLU' to glu instead of
  mesa in the 'patch-dynamic-link' phase.
2015-06-05 12:17:18 +08:00
Andreas Enge 16c62e1fc4 gnu: Add LibreOffice.
* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice, libreoffice):
  New variables.

Co-authored-by: John Darrington <jmd@gnu.org>
2015-06-04 22:59:18 +02:00
Ludovic Courtès ad29c6f2e5 gnu: guile-reader: Update to 0.6.1.
* gnu/packages/guile.scm (guile-reader)[source, version]: Update to 0.6.1.
  [arguments]: Remove #:locale argument.
2015-06-03 11:47:36 +02:00
Ricardo Wurmus c0b1909106 gnu: Add Data::Stag.
* gnu/packages/perl.scm (perl-data-stag): New variable.
2015-06-03 10:41:21 +02:00
Ricardo Wurmus 458ee7dcf0 gnu: Add IO::String.
* gnu/packages/perl.scm (perl-io-string): New variable.
2015-06-03 10:41:13 +02:00
Mark H Weaver de8a1818fd gnu: gnupg-2.0: Update to 2.0.28.
* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.28.
2015-06-02 19:18:29 -04:00
Mark H Weaver ed8a724b33 gnu: gnu-pw-mgr: Update to 1.4.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.4.  Use .xz tarball.
  Move 'which' to native-inputs.  Add 'autogen' to native-inputs.
2015-06-02 15:43:34 -04:00
Mark H Weaver 9a59ce2455 gnu: sharutils: Update to 4.15.2.
* gnu/packages/compression.scm (sharutils): Update to 4.15.2.
2015-06-02 15:43:34 -04:00
Ricardo Wurmus e7c097306d gnu: Add HTSlib.
* gnu/packages/bioinformatics.scm (htslib): New variable.
2015-06-02 14:30:14 +02:00
Ricardo Wurmus 132b4c8c23 gnu: ncbi-vdb: Use "i386" instead of "i686" in directory name.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Copy libraries from
  "linux/gcc/i386" directory instead of "linux/gcc/i686" when building on
  i686.
2015-06-02 14:26:14 +02:00
Christopher Allan Webber 93e7199b35 gnu: Add guile-gdbm-ffi.
* gnu/packages/guile.scm (guile-gdbm-ffi): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2015-05-31 23:44:09 +02:00
Andreas Enge c687f73110 gnu: avidemux: Add output lib dir to rpath.
* gnu/packages/video.scm (avidemux): Set -DCMAKE_SHARED_LINKER_FLAGS
    in the call to cmake.
2015-05-31 23:31:50 +02:00
Ludovic Courtès 97c15a297d gnu: tcsh: Add alternate URL for old tarballs.
Reported by Alexander Vorobiev <alexander.vorobiev@gmail.com>.

* gnu/packages/tcsh.scm (tcsh)[source]: Add alternate URL.
2015-05-31 22:39:48 +02:00
David Thompson 98b87b82be gnu: Add ruby-useragent.
* gnu/packages/ruby.scm (ruby-useragent): New variable.
2015-05-29 20:05:57 -04:00
David Thompson 2cbc105bb3 gnu: Add bundler.
* gnu/packages/ruby.scm (bundler): New variable.
2015-05-29 20:05:57 -04:00
David Thompson d4fde1f239 gnu: Add ruby-rspec.
* gnu/packages/ruby.scm (ruby-rspec): New variable.
2015-05-29 20:05:57 -04:00
David Thompson 4f2a0cac7f gnu: Add ruby-rspec-mocks.
* gnu/packages/ruby.scm (ruby-rspec-mocks): New variable.
2015-05-29 20:05:57 -04:00
David Thompson e69620098b gnu: Add ruby-rspec-expectations.
* gnu/packages/ruby.scm (ruby-diff-lcs-for-rspec, ruby-rspec-expectations):
  New variables.
2015-05-29 20:05:57 -04:00
David Thompson eb0c2dd62f gnu: Add ruby-rspec-core.
* gnu/packages/ruby.scm (ruby-rspec-support, ruby-rspec-core): New variables.
2015-05-29 20:05:57 -04:00
Ludovic Courtès 969ee403c8 gnu: openldap: Update list of source URLs.
* gnu/packages/openldap.scm (openldap)[source]: Remove former URI (domain name
  vanished) and add an up-to-date list of URLs.  Reported by Alexander
  Vorobiev <alexander.vorobiev@gmail.com>.
2015-05-29 22:54:04 +02:00
Andreas Enge df00e14892 gnu: calibre: Update to 2.29.0.
* gnu/packages/ebook.scm (calibre): Update to 2.29.0. Add input openssl.
2015-05-29 21:52:20 +02:00
Mark H Weaver 86e3e370e3 gnu: nss: Update to 3.19.1.
* gnu/packages/gnuzilla.scm (nss): Update to 3.19.1.
  [properties]: Set the timeout to 40 hours.
2015-05-29 14:33:32 -04:00
宋文武 5ff408d998 python-pillow: Update to 2.8.1, remove duplicated ones.
* gnu/packages/python.scm (python-pillow): Update to 2.8.1.
  [inputs]: Add freetype and libwebp.
  (python-pillow, python2-pillow): Remove duplicated variables.
2015-05-29 21:01:42 +08:00
宋文武 0b4eb42e8a gnu: webkitgtk: Update to 2.8.3.
The version (2.8.9) mentioned in the previous commit (e7e8ea0) message
was wrong.  Should be '2.4.9'.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.8.3.
2015-05-29 18:06:08 +08:00
宋文武 e7e8ea069e gnu: webkitgtk-2.4: Update to 2.8.9, build with gtk3.
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.8.9, build with gtk3.
  Move flex and which to 'native-inputs'.  Remove #:configure-flags.
  (webkitgtk/gtk+-2): New variable.
* gnu/packages/gnucash.scm (gnucash): Use webkitgtk/gtk+-2.
* gnu/packages/patches/webkitgtk-2.4.8-gmutexlocker.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.

Co-authored-by: Feng Shu <tumashu@163.com>
2015-05-29 16:05:49 +08:00
Ludovic Courtès 781d0a2ce1 install: Use the actual store name when building the tarball.
* gnu/system/install.scm (self-contained-tarball): Use (%store-directory)
  instead of "/gnu".
2015-05-27 22:18:21 +02:00
Taylan Ulrich Bayırlı/Kammer 51960939a4 gnu: chibi-scheme: Update to 0.7.3.
* gnu/packages/scheme.scm (chibi-scheme): Update to 0.7.3.  Change URL.
2015-05-27 21:13:15 +02:00
Ricardo Wurmus 365c815389 gnu: Add edirect.
* gnu/packages/bioinformatics.scm (edirect): New variable.
2015-05-27 17:42:40 +02:00
Ricardo Wurmus 628bd9b8a7 gnu: shogun: Remove non-free source files.
* gnu/packages/bioinformatics.scm (shogun)[source]: Add snippet to remove
  non-free sources.
2015-05-27 10:56:27 +02:00
Mark H Weaver 9aafbc0c13 gnu: Add wxmaxima.
* gnu/packages/maths.scm (wxmaxima): New variable.
2015-05-26 10:24:11 -04:00
Mark H Weaver 77af7b2407 gnu: maxima: Update to 5.36.1.
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1.  Add patch.
2015-05-26 10:23:38 -04:00
Mark H Weaver d4e17f841c gnu: imagemagick: Update to 6.9.1-3.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.1-3.
2015-05-26 10:23:28 -04:00
宋文武 6344feb318 Merge branch 'gtk-rebuild' 2015-05-26 17:44:18 +08:00
Ludovic Courtès bf87f38ace system: Define '%base-user-accounts'.
* gnu/system/shadow.scm (%base-user-accounts): New variable.
* gnu/system.scm (<operating-system>)[users]: Use it as the default value.
* gnu/system/examples/bare-bones.tmpl (users): Use it.
* gnu/system/examples/desktop.tmpl (users): Likewise.
* doc/guix.texi (operating-system Reference, User Accounts): Adjust
  accordingly.
2015-05-25 21:34:23 +02:00
Andreas Enge 0899144f79 gnu: Add xmlsec.
* gnu/packages/xml.scm (xmlsec): New variable.
2015-05-24 22:55:32 +02:00
Ludovic Courtès 0c09a306e5 system: Make sure user accounts refer to existing groups.
Fixes <http://bugs.gnu.org/20646>.
Reported by David Thompson <davet@gnu.org>.

* gnu/system/shadow.scm (assert-valid-users/groups): New procedure
* gnu/system.scm (operating-system-activation-script): Use it.
* tests/guix-system.sh (make_user_config): New function.
  Add 3 tests using it.
* po/guix/POTFILES.in: Add gnu/system/shadow.scm.
2015-05-24 18:02:54 +02:00
Ricardo Wurmus 4a1bf0907b gnu: seahorse: Add SSH support.
* gnu/packages/gnome.scm (seahorse)[inputs]: Add "openssh".
2015-05-24 12:40:56 +02:00
Ricardo Wurmus df90c701b3 gnu: Add seahorse.
* gnu/packages/gnome.scm (seahorse): New variable.
2015-05-24 12:00:17 +02:00
Ricardo Wurmus e99a3d6fd2 gnu: Add gnome-keyring.
* gnu/packages/gnome.scm (gnome-keyring): New variable.
2015-05-24 12:00:17 +02:00