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Author SHA1 Message Date
Ben Woodcroft a68e586097
gnu: diamond: Update to 0.9.13. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
 2017-11-14 08:25:43 +10:00
Ricardo Wurmus 5ccde2079e
gnu: Move test packages from perl to perl-check. 
* gnu/packages/perl.scm (perl-test2-bundle-extended,
perl-test2-plugin-nowarnings, perl-test-base, perl-test-class,
perl-test-class-most, perl-test-cleannamespaces, perl-test-command,
perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep,
perl-test-differences, perl-test-directory, perl-test-eol,
perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist,
perl-test-files, perl-test-harness, perl-test-leaktrace,
perl-test-longstring, perl-test-manifest, perl-test-memory-cycle,
perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs,
perl-test-notabs, perl-test-nowarnings, perl-test-number-delta,
perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires,
perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint,
perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn,
perl-test-warnings, perl-test-without-module, perl-test-writevariants,
perl-test-yaml, perl-test-trailingspace): Move variables to ...
* gnu/packages/perl-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/glib.scm,
gnu/packages/gnupg.scm,
gnu/packages/image-viewers.scm,
gnu/packages/language.scm,
gnu/packages/networking.scm,
gnu/packages/package-management.scm,
gnu/packages/perl.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/version-control.scm,
gnu/packages/web.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm: Use perl-check module.
 2017-11-13 23:03:01 +01:00
Ricardo Wurmus 587d175266
gnu: ghc-tls: Move to (gnu packages tls). 
* gnu/packages/haskell.scm (ghc-tls): Move from here...
* gnu/packages/tls.scm (ghc-tls): ...to here.
* gnu/packages/haskell-web.scm: Use (gnu packages tls).
 2017-11-13 18:40:55 +01:00
Ricardo Wurmus f24eba89f4
gnu: Move crypto packages from haskell to haskell-crypto. 
* gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse,
ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5,
ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem,
ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation,
ghc-x509-system): Move variables to ...
* gnu/packages/haskell-crypto.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/haskell-web.scm,
gnu/packages/version-control.scm: Include haskell-crypto module.
 2017-11-13 18:36:51 +01:00
Ricardo Wurmus 44b7374a22
gnu: Move web packages from haskell to haskell-web. 
* gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http,
ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2,
ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit,
ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types,
ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty,
ghc-aeson-qq, ghc-multipart): Move variables to ...
* gnu/packages/haskell-web.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-web module.
 2017-11-13 18:12:37 +01:00
Ricardo Wurmus a06b9b5007
gnu: Move testing packages from haskell to haskell-check. 
* gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml,
ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty,
ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun,
ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io,
ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit,
ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit,
hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib,
ghc-hspec-expectations): Move variables to ...
* gnu/packages/haskell-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-check module.
 2017-11-13 18:12:27 +01:00
Ricardo Wurmus d4735e8c65
gnu: cd-hit: Update source tarball hash. 
* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
 2017-11-13 16:02:35 +01:00
Kei Kebreau 62f0806f4c
Revert "gnu: totem: Enable parallel build." 
This reverts commit e5f748a6c0.
 2017-11-13 07:47:23 -05:00
Ludovic Courtès a0fea77dbb
services: guix: Remove dependency on 'lsof'. 
This is a followup to b8f59cdc20e9d83ce63523ef917e95fcee07f134:
'list-runtime-roots' no longer depends on 'lsof'.

* gnu/services/base.scm (<guix-configuration>)[lsof]: Remove.
(guix-shepherd-service): Adjust accordingly.
* doc/guix.texi (Base Services): Adjust accordingly.
* gnu/system.scm (%base-packages): Remove LSOF.
 2017-11-13 11:36:28 +01:00
Ludovic Courtès b918473189
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to ff23b47.
 2017-11-13 11:31:27 +01:00
Efraim Flashner 6b7490b340
gnu: ibus: Update to 1.5.17. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
 2017-11-13 10:19:26 +02:00
Efraim Flashner ce12b31157
gnu: ibus: Enable wayland support. 
* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable
wayland support.
[inputs]: Add wayland.
 2017-11-13 10:19:26 +02:00
Kei Kebreau f35bb0711c
gnu: libsoup: Update to 2.60.2. 
* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
 2017-11-12 21:20:24 -05:00
Leo Famulari c0d1fa64d0
gnu: imagemagick: Update to 6.9.9-23. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
 2017-11-12 17:50:01 -05:00
Leo Famulari 2560aa7adb
gnu: Remove unrar. 
This package is abandoned upstream and contains serious bugs:

http://seclists.org/oss-sec/2017/q3/329
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122

* gnu/packages/compression.scm (unrar): Remove variable.
 2017-11-12 16:17:08 -05:00
Rutger Helling 8420c7a356
gnu: linux-libre: Change URL to HTTPS. 
* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-12 15:46:44 -05:00
Efraim Flashner 1650cf9284
gnu: mupdf: Unbundle mujs. 
* gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs.
[inputs]: Add mujs.
 2017-11-12 19:39:21 +02:00
Efraim Flashner 89ba894eb3
gnu: Add mujs. 
* gnu/packages/javascript.scm (mujs): New variable.
 2017-11-12 19:39:20 +02:00
Efraim Flashner 76379dcace
gnu: mupdf: Use https. 
* gnu/packages/pdf.scm (mupdf)[source]: Use https.
[home-page]: Same.
 2017-11-12 19:39:20 +02:00
Efraim Flashner 31f248fa2c
gnu: pdf.scm: Arrange modules alphabetically. 
* gnu/packages/pdf.scm: Arrange modules alphabetically.
 2017-11-12 19:39:17 +02:00
Efraim Flashner b07bfd06ee
gnu: lash: Don't build static libraries. 
* gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to
disable static libraries.
 2017-11-12 12:04:49 +02:00
Efraim Flashner 44df780768
gnu: lash: Don't build lashd. 
This fixes bug#28174.

* gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
 2017-11-12 12:04:46 +02:00
Kei Kebreau c7b433de47
gnu: glib-networking: Update to 2.54.1. 
* gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
 2017-11-12 01:17:10 -05:00
Efraim Flashner 1e2a36e1b0
gnu: ffmpeg: Reduce the size of the closure. 
* gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to
disable the html man pages and the static libraries.
 2017-11-12 07:11:29 +02:00
Efraim Flashner 7e0d513fb9
gnu: mupdf: Use Texinfo for the description. 
* gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the
description.
 2017-11-12 07:11:25 +02:00
Leo Famulari b7ca42aa99
gnu: w3m: Find an editor in the environment. 
* gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor
in #:configure-flags.
[source]: Use git-file-name.
 2017-11-11 23:04:39 -05:00
Leo Famulari 882d921344
gnu: mupdf: Actually fix CVE-2017-15587. 
The original fix could be removed by an optimizing compiler.

* gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
 2017-11-11 22:34:24 -05:00
Tobias Geerinckx-Rice 07cc9245e6
gnu: libusb-compat: Use the same home page as libusb. 
* gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
 2017-11-12 03:25:49 +01:00
Tobias Geerinckx-Rice 5ade9bc769
gnu: fcgi: Fix typo in description. 
* gnu/packages/web.scm (fcgi)[description]: Fix typo.
 2017-11-12 03:25:48 +01:00
Tobias Geerinckx-Rice d1b5043947
gnu: fcgi: Use archived home page fork. 
* gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
 2017-11-12 03:25:48 +01:00
Tobias Geerinckx-Rice 9c2917f9e7
gnu: lynx: Use new home page. 
* gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
 2017-11-12 03:25:47 +01:00
Tobias Geerinckx-Rice 6862e4bfe7
gnu: perl-mime-types: Update to 2.14. 
* gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
 2017-11-12 03:25:47 +01:00
Ludovic Courtès f9035ef213
gnu: mailutils: Update to 3.4. 
* gnu/packages/mail.scm (mailutils): Update to 3.4.
 2017-11-11 23:21:54 +01:00
Ludovic Courtès cda2e2c719
gnu: emacs-emms: Update to 4.4. 
* gnu/packages/emacs.scm (emms): Update to 4.4.
 2017-11-11 23:21:54 +01:00
Jan Nieuwenhuizen 327df26fbf
gnu: nyacc: Update to 0.82.4. 
* gnu/packages/mes.scm (nyacc): Update to 0.82.4.
 2017-11-11 23:11:04 +01:00
Leo Famulari 4564782c3d
gnu: nvi: Build with support for Unicode text. 
* gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar'
to #:configure-flags.
 2017-11-11 12:00:37 -05:00
Marius Bakke 56f35d92f5
gnu: lvm2: Update to 2.02.176. 
* gnu/packages/linux.scm (lvm2): Update to 2.02.176.
 2017-11-11 07:40:55 +01:00
Marius Bakke ec03062171
gnu: libstaroffice: Update to 0.0.5. 
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
 2017-11-11 07:18:34 +01:00
Marius Bakke 45d5c80253
gnu: libvisio: Update to 0.1.6. 
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6.
[source](patches): Remove.
* gnu/packages/patches/libvisio-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-11-11 07:15:39 +01:00
Marius Bakke 7a9283a619
gnu: libetonyek: Update to 0.1.7. 
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.7.
[source](patches): Remove.
[arguments]<#:phases>: Remove.
[native-inputs]: Remove AUTOCONF and AUTOMAKE.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-11-11 07:13:01 +01:00
Rutger Helling 074ff555ab
gnu: libreoffice: Update to 5.3.7.2 and enable GTK3. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.7.2
[source]: Change URL to HTTPS.
[inputs]: Add gtk+.
[configure-flags]: Remove "--disable-gtk3".

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-11-11 07:03:06 +01:00
Alex Vong ce1ac8eea6
gnu: python2-rpython: Update to 0.2.1. 
* gnu/packages/python.scm (python2-rpython): Update to 0.2.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-11-11 07:00:22 +01:00
Alex Vong e65acb3124
gnu: python-sympy: Update to 1.1.1. 
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.1.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-11-11 06:57:00 +01:00
Marius Bakke e077e7da7f
gnu: python-sqlparse: Fix syntax error. 
This is a follow-up to commit 8d688cd27f.

* gnu/packages/python.scm (python-sqlparse)[arguments]: Add missing lambda.
 2017-11-11 06:40:50 +01:00
Tobias Geerinckx-Rice 8d688cd27f
gnu: python-sqlparse: Update to 0.2.4. 
* gnu/packages/python.scm (python-sqlparse, python2-sqlparse): Update to
0.2.4.
[arguments]: Don't invoke ‘2to3’.
 2017-11-11 05:17:59 +01:00
Tobias Geerinckx-Rice 795ec760e4
install: Fix typo. 
* gnu/system/install.scm (installation-os): Fix typo in comment.
 2017-11-11 05:17:59 +01:00
Tobias Geerinckx-Rice 9629c6b4b2
gnu: cyrus-sasl: Use new home page. 
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[home-page]: Update.
 2017-11-11 05:17:58 +01:00
Tobias Geerinckx-Rice 11ed4108fb
gnu: methylkit: Use new home page. 
* gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
 2017-11-11 05:17:58 +01:00
Ben Woodcroft 7c087150ec
gnu: vsearch: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
 2017-11-11 09:33:16 +10:00
Leo Famulari 74c0aeb027
gnu: webkitgtk: Update to 2.18.3 [fixes CVE-2017-{13788,13798,13803}]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.3.
 2017-11-10 12:48:15 -05:00