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Author SHA1 Message Date
Ricardo Wurmus
89f40c5e4e
gnu: Add r-gostats. 
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
 2016-09-26 07:47:54 +02:00
Ricardo Wurmus
1a1931f7e0
gnu: Add r-category. 
* gnu/packages/bioinformatics.scm (r-category): New variable.
 2016-09-26 07:47:54 +02:00
Ricardo Wurmus
ad740ff818
gnu: Add r-gseabase. 
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
 2016-09-26 07:47:53 +02:00
Ricardo Wurmus
cd9e7dc7ff
gnu: Add r-rbgl. 
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
 2016-09-26 03:25:23 +02:00
Ricardo Wurmus
e816377374
gnu: Add r-annotationforge. 
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
 2016-09-26 03:25:17 +02:00
Ricardo Wurmus
9e330278ee
gnu: Add r-batchjobs. 
* gnu/packages/statistics.scm (r-batchjobs): New variable.
 2016-09-26 03:25:11 +02:00
Ricardo Wurmus
dc4fb16d25
gnu: Add r-fail. 
* gnu/packages/statistics.scm (r-fail): New variable.
 2016-09-26 03:25:06 +02:00
Ricardo Wurmus
cd26ec3bbf
gnu: Add r-bbmisc. 
* gnu/packages/statistics.scm (r-bbmisc): New variable.
 2016-09-26 03:25:02 +02:00
Ricardo Wurmus
929d4aaea1
gnu: Add r-checkmate. 
* gnu/packages/statistics.scm (r-checkmate): New variable.
 2016-09-26 03:24:59 +02:00
Ricardo Wurmus
0d90462fa3
gnu: Add r-backports. 
* gnu/packages/statistics.scm (r-backports): New variable.
 2016-09-26 03:24:55 +02:00
Ricardo Wurmus
8e1bfc7e8c
gnu: Add r-sendmailr. 
* gnu/packages/statistics.scm (r-sendmailr): New variable.
 2016-09-26 03:24:50 +02:00
Ricardo Wurmus
0c77fd50f8
gnu: Add r-pheatmap. 
* gnu/packages/statistics.scm (r-pheatmap): New variable.
 2016-09-26 03:24:44 +02:00
Ricardo Wurmus
092197a548
gnu: Add r-matrix. 
* gnu/packages/statistics.scm (r-matrix): New variable.
 2016-09-26 03:21:32 +02:00
Ricardo Wurmus
ad34f0ac96
gnu: Add r-deseq2. 
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
 2016-09-26 03:21:27 +02:00
Ricardo Wurmus
2301fd3e4d
gnu: Add r-genefilter. 
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
 2016-09-26 03:21:19 +02:00
Ricardo Wurmus
2d21d44dbd
gnu: Add r-hmisc. 
* gnu/packages/statistics.scm (r-hmisc): New variable.
 2016-09-26 03:21:13 +02:00
Ricardo Wurmus
07a664cde0
gnu: Add r-geneplotter. 
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
 2016-09-26 03:21:07 +02:00
Ricardo Wurmus
8c6de58849
gnu: Add r-annotate. 
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
 2016-09-26 03:20:59 +02:00
Ricardo Wurmus
2213730c5b
gnu: Add r-rpart. 
* gnu/packages/statistics.scm (r-rpart): New variable.
 2016-09-26 03:20:52 +02:00
Ricardo Wurmus
356c6d61a6
gnu: Add r-rjson. 
* gnu/packages/web.scm (r-rjson): New variable.
 2016-09-26 03:20:44 +02:00
Ricardo Wurmus
bbed0ab6b4
gnu: Add r-hwriter. 
* gnu/packages/web.scm (r-hwriter): New variable.
 2016-09-26 03:20:19 +02:00
Ricardo Wurmus
57a31efb4b
gnu: tcc: Disable build on MIPS. 
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
 2016-09-26 03:01:06 +02:00
Arun Isaac
9311722703
gnu: Add optipng. 
* gnu/packages/image.scm (optipng): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-09-25 16:53:00 -04:00
Ricardo Wurmus
7acd71d13d
gnu: epiphany: Drop NSS and libwnck. 
These dependencies were dropped in Epiphany 3.21.x.

* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
 2016-09-25 13:04:00 +02:00
Ricardo Wurmus
9f58932ecc
gnu: epiphany: Update to 3.22.0. 
* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
 2016-09-25 13:04:00 +02:00
Ricardo Wurmus
58d04dbaf0
gnu: python-virtualenv: Update to 15.0.3. 
* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
 2016-09-25 13:04:00 +02:00
Mark H Weaver
1535c0a6b6
gnu: linux-libre: Update to 4.7.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
 2016-09-25 03:57:57 -04:00
Mark H Weaver
dfcce0cc8d
gnu: linux-libre@4.4: Update to 4.4.22. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
 2016-09-25 03:55:37 -04:00
John Darrington
94c5dc8c03
gnu: Add pam-krb5 
* gnu/packages/admin.scm (pam-krb5): New variable.
 2016-09-25 06:40:29 +02:00
Efraim Flashner
a8f3d49280
gnu: privoxy: Update to 3.0.26. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
 2016-09-24 23:09:14 +03:00
Efraim Flashner
0ab57b0d04
gnu: tor: Update to 0.2.8.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
 2016-09-24 22:27:16 +03:00
ng0
6fc48c2ee2
gnu: Add gforth. 
* gnu/packages/gforth.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
 2016-09-24 14:07:12 +08:00
Rene Saavedra
54021cd8c6
gnu: Add gnome-calculator. 
* gnu/packages/gnome.scm (gnome-calculator): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-09-24 00:51:52 -04:00
Erik Edrosa
8058880017
gnu: Add cmark. 
* gnu/packages/markdown.scm (cmark): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 20:56:51 -04:00
ng0
93666cf783
gnu: Add enet. 
* gnu/packages/networking.scm (enet): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 19:18:10 -04:00
Danny Milosavljevic
03ddad84ba
gnu: flashrom: Update to 0.9.9 
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 19:03:19 -04:00
ng0
0f5de84e98
gnu: Add nickle. 
* gnu/packages/nickle.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 18:54:24 -04:00
Efraim Flashner
047cd01d11
gnu: orpheus: Use 'modify-phases'. 
* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases'
syntax.
 2016-09-23 17:38:25 +03:00
Efraim Flashner
5bd6270211
gnu: orpheus: Fix build on mips64el. 
* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass
"--host=mips64el-unknown-linux-gnu" to ./configure.
 2016-09-23 17:38:24 +03:00
Nicolas Goaziou
236d522b80
gnu: giac-xcas: Update to 1.2.2-81. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 09:57:20 -04:00
Ricardo Wurmus
8f309571d3
gnu: r-curl: Respect CURL_CA_BUNDLE variable. 
* gnu/packages/web.scm (r-curl)[arguments]: Add phase
"allow-CURL_CA_BUNDLE".
 2016-09-23 13:13:41 +02:00
Ricardo Wurmus
646a84338d
gnu: sra-tools: Update to 2.7.0. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
 2016-09-23 11:46:53 +02:00
Ricardo Wurmus
40974c933e
gnu: ncbi-vdb: Update to 2.7.0. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
 2016-09-23 11:46:26 +02:00
Ricardo Wurmus
48b419ebd6
gnu: ngs-sdk: Update to 1.2.5. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
 2016-09-23 11:45:24 +02:00
Ricardo Wurmus
4781820147
gnu: randomjungle: Only build on x86_64 and i686. 
* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
 2016-09-23 08:23:51 +02:00
Efraim Flashner
fc3b2cbb04
gnu: retroarch: Update to 1.3.6. 
* gnu/packages/games.scm (retroarch): Update to 1.3.6.
 2016-09-23 09:02:03 +03:00
Ricardo Wurmus
5989d4eaac
gnu: synfig: Fix isnan error. 
* gnu/packages/animation.scm (synfig)[arguments]: Add build phase to
replace "::isnan" with "std::isnan".
 2016-09-23 07:45:16 +02:00
Eric Bavier
56f33f3fd5
gnu: ccache: Upgrade to 3.3.1. 
* gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1.
[description]: Adjust supported languages.
 2016-09-22 23:56:17 -05:00
Eric Bavier
bd368c7174
gnu: ccache: Use modify-phases. 
* gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
 2016-09-22 23:43:20 -05:00
Eric Bavier
1a0ae573c7
gnu: boost: Add -j for build. 
* gnu/packages/boost.scm (boost)[arguments]: Add -j flag for build
phase.
 2016-09-22 22:34:04 -05:00
Eric Bavier
6941965526
gnu: boost: Upgrade to 1.61.0. 
* gnu/packages/boost.scm (boost): Upgrade to 1.61.0
* gnu/packages/databases.scm (mysql)[arguments]: Compute boost minor
version for substitution.
 2016-09-22 22:33:37 -05:00
ng0
71b611bc34
gnu: Add ghc-transformers-0.4.2.0. 
* gnu/packages/haskell.scm (ghc-transformers-0.4.2.0): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:01 -04:00
ng0
10a03d6665
gnu: Add ghc-system-fileio. 
* gnu/packages/haskell.scm (ghc-system-fileio): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
23feb6e4fb
gnu: Add ghc-system-filepath. 
* gnu/packages/haskell.scm (ghc-system-filepath): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
58c85b1f82
gnu: Add ghc-options. 
* gnu/packages/haskell.scm (ghc-options): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
c92d944c1e
gnu: Add ghc-chell-quickcheck. 
* gnu/packages/haskell.scm (ghc-chell-quickcheck): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
475d366866
gnu: Add ghc-chell-quickcheck-bootstrap. 
* gnu/packages/haskell.scm (ghc-chell-quickcheck-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
8ea94489fd
gnu: Add ghc-chell. 
* gnu/packages/haskell.scm (ghc-chell): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
7e06c4aa98
gnu: Add ghc-options-bootstrap. 
* gnu/packages/haskell.scm (ghc-options-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
25b3bdb5ff
gnu: Add ghc-shelly. 
* gnu/packages/haskell.scm (ghc-shelly): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
3f7aa1029b
gnu: Add ghc-system-fileio-bootstrap. 
* gnu/packages/haskell.scm (ghc-system-fileio-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:58 -04:00
ng0
ddd5955b1e
gnu: Add ghc-system-filepath-bootstrap. 
* gnu/packages/haskell.scm (ghc-system-filepath-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:58 -04:00
ng0
2b41f4afc1
gnu: Add ghc-lifted-async. 
* gnu/packages/haskell.scm (ghc-lifted-async): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:58 -04:00
ng0
6aab9ba6d4
gnu: Add ghc-constraints. 
* gnu/packages/haskell.scm (ghc-constraints): New variable.
 2016-09-22 20:09:58 -04:00
ng0
e7e2f03c8f
gnu: Add ghc-array. 
* gnu/packages/haskell.scm (ghc-array): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
3db882776b
gnu: Add ghc-graphviz. 
* gnu/packages/haskell.scm (ghc-graphviz): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
d4cca6b0ae
gnu: Add ghc-fgl-arbitrary. 
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
ce242fd05e
gnu: ghc-fgl: Update to 5.5.3.0. 
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.5.3.0.
[inputs]: Add ghc-hspec and ghc-quickcheck.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
6e0741f739
gnu: Add ghc-wl-pprint-text. 
* gnu/packages/haskell.scm (ghc-wl-pprint-text): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:56 -04:00
ng0
3b281f5b8d
gnu: Add ghc-process. 
* gnu/packages/haskell.scm (ghc-process): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:56 -04:00
ng0
4fec5cdbf4
gnu: Add ghc-directory. 
* gnu/packages/haskell.scm (ghc-directory): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:56 -04:00
ng0
e1a56bb258
gnu: Add ghc-colour. 
* gnu/packages/haskell.scm (ghc-colour): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
1d9db656c9
gnu: Add ghc-bytestring. 
* gnu/packages/haskell.scm (ghc-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
41167bd255
gnu: Add ghc-monads-tf. 
* gnu/packages/haskell.scm (ghc-monads-tf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
d52ca22ac3
gnu: Add ghc-patience. 
* gnu/packages/haskell.scm (ghc-patience): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
027b79762a
gnu: Add ghc-findbin. 
* gnu/packages/haskell.scm (ghc-findbin): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
54c37341d1
gnu: Add ghc-transformers. 
* gnu/packages/haskell.scm (ghc-transformers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
f827033102
gnu: Add ghc-tar. 
* gnu/packages/haskell.scm (ghc-tar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
a71f861752
gnu: Add ghc-bytestring-handle. 
* gnu/packages/haskell.scm (ghc-bytestring-handle): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
e9e519be76
gnu: Add ghc-sandi. 
* gnu/packages/haskell.scm (ghc-sandi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
ab12bd3a04
gnu: Add ghc-tasty-th. 
* gnu/packages/haskell.scm (ghc-tasty-th): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
fe3c62c7d5
gnu: Add ghc-regex-compat-tdfa. 
* gnu/packages/haskell.scm (ghc-regex-compat-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
7e444dba6e
gnu: Add ghc-regex-tdfa. 
* gnu/packages/haskell.scm (ghc-regex-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
d58dc851f9
gnu: Add ghc-regex-applicative. 
* gnu/packages/haskell.scm (ghc-regex-applicative): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
1a0dbf0ded
gnu: Add ghc-haskeline. 
* gnu/packages/haskell.scm (ghc-haskeline): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
7c14128dd0
gnu: Add ghc-data-ordlist. 
* gnu/packages/haskell.scm (ghc-data-ordlist): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
c763b8ae89
gnu: Add ghc-cryptohash. 
* gnu/packages/haskell.scm (ghc-cryptohash): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
eddc69241b
gnu: ghc-cryptonite: Update to 0.19. 
* gnu/packages/haskell.scm (ghc-cryptonite): Update to 0.19.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:51 -04:00
ng0
301e762ad1
gnu: Add ghc-binary. 
* gnu/packages/haskell.scm (ghc-binary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:51 -04:00
ng0
cc5e16a764
gnu: Add ghc-base16-bytestring. 
* gnu/packages/haskell.scm (ghc-base16-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:51 -04:00
Leo Famulari
67fa6ab5bb
gnu: imagemagick: Update to 6.9.5-10. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-10.
 2016-09-22 20:09:51 -04:00
Efraim Flashner
5895f193c9
gnu: reptyr: Remove mips64el support. 
* gnu/packages/screen.scm (reptyr)[supported-systems]: New field, remove
support for mips64el.
 2016-09-22 22:42:47 +03:00
Efraim Flashner
cda5e76f51
gnu: python2-django: Fix typo in native-inputs. 
* gnu/packages/django.scm (python2-django)[native-inputs]: Inherit from
python-django's native-inputs, not its inputs.
 2016-09-22 22:42:47 +03:00
Efraim Flashner
7adc698f69
gnu: python-fake-factory: Update to 0.7.2. 
* gnu/packages/python.scm (python-fake-factory): Update to 0.7.2.
[arguments]: Remove phase disabling failing test.
[home-page]: Use https.
 2016-09-22 22:42:46 +03:00
Efraim Flashner
0dbb7ac2df
gnu: plink: Set endian-ness on more architectures. 
* gnu/packages/patches/plink-endian-detection.patch: New file.
* gnu/packages/bioinformatics.scm (plink)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-09-22 22:42:37 +03:00
John Darrington
c788c5feb1
gnu: Add ytalk 
* gnu/packages/messaging.scm (ytalk): New variable.
 2016-09-22 21:07:33 +02:00
Leo Famulari
163d93a6bd
gnu: openssl-next: Update to 1.1.0a [security fixes]. 
Fixes CVE-2016-{6304,6305,6307,6308}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0a.
[replacement]: New field.
 2016-09-22 13:45:54 -04:00
Leo Famulari
50f701d4f9
gnu: openssl: Replace with 1.0.2i [security fixes]. 
Fixes CVE-2016-{2177,2178,2179,2180,2181,2182,2183,6302,6303,6304,6306,6308}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2i): New variable.
 2016-09-22 13:45:54 -04:00
Efraim Flashner
62d00095c2
gnu: prank: Allow building on 32-bit machines. 
* gnu/packages/bioinformatics.scm (prank)[arguments]: Add a phase
removing the '-m64' compiler flag.
 2016-09-22 19:21:16 +03:00
Mark H Weaver
a143e1b877
gnu: webkitgtk: Update to 2.14.0. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.0.
 2016-09-22 11:59:58 -04:00