Commit graph

52241 commits

Author SHA1 Message Date
Ricardo Wurmus
d2723484f6
gnu: r-iranges: Update to 2.20.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.1.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
937f3a46eb
gnu: r-genomeinfodb: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.22.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
da03fa3c90
gnu: r-edger: Update to 3.28.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
8f5d2c3abc
gnu: r-variantannotation: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.32.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
eea491e5c6
gnu: r-limma: Update to 3.42.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
da6edb199d
gnu: r-xvector: Update to 0.26.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.26.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
0202b13e8b
gnu: r-genomicranges: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.38.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
8d1c3666d7
gnu: r-biobase: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.46.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
de9ae3e7b1
gnu: r-annotationdbi: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.48.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
68a9d9f26a
gnu: r-biomart: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.42.0.
[propagated-inputs]: Add r-biocfilecache, r-openssl, and r-rappdirs; remove
r-rcurl.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
5854a4a265
gnu: r-biocparallel: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
15cd3f6ef5
gnu: r-biostrings: Update to 2.54.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.54.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
e1d681e2af
gnu: r-rsamtools: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.1.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
4ada4fb745
gnu: r-delayedarray: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
264db038c6
gnu: r-summarizedexperiment: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
55e515d206
gnu: r-genomicalignments: Update to 1.22.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.22.1.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
15187da9e7
gnu: r-rtracklayer: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.46.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
9fec340391
gnu: r-genomicfeatures: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
323f42b2ca
gnu: r-topgo: Update to 2.37.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.37.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
e3a2b96c80
gnu: r-bsgenome: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.54.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
bca1c45e4e
gnu: r-impute: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.60.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
b590742362
gnu: r-seqpattern: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.18.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
e06b34e8c6
gnu: r-genomation: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.18.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
a9790190d1
gnu: r-seqlogo: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.52.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
a5f9b30338
gnu: r-motifrg: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.30.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
2f15045400
gnu: r-zlibbioc: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.32.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
108c03a8eb
gnu: r-rhtslib: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.0.
[propagated-inputs]: Add curl.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
7b6c008960
gnu: r-bamsignals: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.18.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
f375d74072
gnu: r-rcas: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.12.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
3964f2c24e
gnu: r-mutationalpatterns: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.12.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
3a0229eba0
gnu: r-tximport: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
126539d1ae
gnu: r-rhdf5: Update to 2.30.1.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.30.1.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
4e5c217684
gnu: r-pcamethods: Update to 1.78.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.78.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
589939937d
gnu: r-msnbase: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.12.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
597aeb8a34
gnu: r-msnid: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.20.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
3ccf1e3c20
gnu: r-aroma-light: Update to 3.16.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.16.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
783bbe3ace
gnu: r-deseq: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.38.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
0a6704e226
gnu: r-edaseq: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.20.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
2beffcb558
gnu: r-interactivedisplaybase: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.24.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
6339ea22f1
gnu: r-annotationhub: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.18.0.
[propagated-inputs]: Add r-biocversion.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
c21bf901e2
gnu: r-fastseg: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.32.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
fedba48bb5
gnu: r-keggrest: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.26.1.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
b342b20a24
gnu: r-gage: Update to 2.36.0.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.36.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
48c7ee93b7
gnu: r-genomicfiles: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.22.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
dac706c322
gnu: r-complexheatmap: Update to 2.2.0.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.2.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
2edb116c1c
gnu: r-dirichletmultinomial: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.28.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e107f3df54
gnu: r-ensembldb: Update to 2.10.2.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.10.2.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e89032667d
gnu: r-organismdbi: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.28.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
866810e686
gnu: r-biovizbase: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.34.1.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
81600df302
gnu: r-ggbio: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.34.0.
2019-12-15 15:38:58 +01:00