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66710 commits

Author SHA1 Message Date
Danny Milosavljevic 8ed0c56725
gnu: python-aiodns: Propagate python-pycares.
* gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares...
[propagated-inputs]: ...to here.
2020-09-12 02:33:06 +02:00
Raghav Gururajan dbcfefe5ec
gnu: Add poezio.
* gnu/packages/messaging.scm (poezio): New variable.
2020-09-12 02:25:31 +02:00
Raghav Gururajan c6e8d17b02
gnu: Add python-potr.
* gnu/packages/python-crypto.scm (python-potr): New variable.
2020-09-12 02:19:05 +02:00
Raghav Gururajan c519a5b5b6
gnu: Add python-slixmpp.
* gnu/packages/python-xyz.scm (python-slixmpp): New variable.
2020-09-12 02:16:57 +02:00
Danny Milosavljevic e88242cb75
gnu: ebusd: Enable MQTT support.
* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto.
2020-09-12 02:07:34 +02:00
Danny Milosavljevic c3bbaea727
gnu: Add mosquitto.
* gnu/packages/messaging.scm (mosquitto): New variable.
2020-09-12 02:07:30 +02:00
Tobias Geerinckx-Rice 52569eeb7f
gnu: lldpd: Update to 1.0.6.
* gnu/packages/networking.scm (lldpd): Update to 1.0.6.
2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice dd6eac3e47
gnu: enet: Update to 1.3.16.
* gnu/packages/networking.scm (enet): Update to 1.3.16.
2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice 0649c3cafa
gnu: batctl: Update to 2020.3.
* gnu/packages/networking.scm (batctl): Update to 2020.3.
2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice 54151d1af5
Revert "gnu: dovecot: Set moduledir to global directory."
This reverts commit db0109be42.
Same reason as commit d9d88c2ff0.
2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice d9d88c2ff0
Revert "services: dovecot: Use modules via symlink to system profile."
This reverts commit bcfe0f0c1e for now.

It breaks most current use(r)s of the Dovecot service and needs to be
combined with an extra modules configuration field of some kind.

See <https://issues.guix.gnu.org/43347>.
2020-09-11 22:38:08 +02:00
Tobias Geerinckx-Rice ef500f9be4
gnu: padthv1: Update to 0.9.17.
* gnu/packages/music.scm (padthv1): Update to 0.9.17.
[inputs]: Replace fftw with fftwf.
2020-09-11 22:38:07 +02:00
Tobias Geerinckx-Rice a43fcc720e
gnu: libetpan: Update to 1.9.4.
* gnu/packages/mail.scm (libetpan): Update to 1.9.4.
2020-09-11 22:38:07 +02:00
Ricardo Wurmus a1ea0585d0
gnu: bsequencer: Update to 1.6.0.
* gnu/packages/music.scm (bsequencer): Update to 1.6.0.
2020-09-11 22:19:26 +02:00
Ricardo Wurmus 8458490bc2
gnu: r-adaptivesparsity: End build phase on #T.
* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase
"link-against-armadillo" with Boolean.
2020-09-11 22:04:41 +02:00
Ricardo Wurmus fd498532ab
gnu: r-adaptivesparsity: Fix case of "Gaussian".
* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo.
2020-09-11 22:04:12 +02:00
Ricardo Wurmus dbef55b7aa
gnu: r-qtl: Use CRAN-URI.
* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit
mirror URL.
2020-09-11 22:02:22 +02:00
Ricardo Wurmus 1e8bfc4cf9
gnu: r-qtl: Correct indentation.
* gnu/packages/cran.scm (r-qtl): Reindent.
[description]: Reflow paragraphs.
2020-09-11 22:00:30 +02:00
zimoun d4e2ec1b8a
gnu: r-absfiltergsea: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here...
* gnu/packages/cran.scm (r-absfiltergsea): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:23 +02:00
zimoun 77c7394086
gnu: r-diversitree: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:23 +02:00
zimoun 415aa8a583
gnu: r-phangorn: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:21 +02:00
zimoun f9c0b2e05a
gnu: r-seurat: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:17 +02:00
zimoun b31c364467
gnu: r-maldiquant: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here...
* gnu/packages/cran.scm (r-maldiquant): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:12 +02:00
zimoun 30aaee3306
gnu: r-seqminer: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:07 +02:00
zimoun 66a8e62070
gnu: r-qtl2: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:03 +02:00
zimoun 496a52dc41
gnu: r-qtl: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-qtl): Move from here...
* gnu/packages/cran.scm (r-qtl): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:58 +02:00
zimoun c23ff34423
gnu: r-igraph: Move to (gnu packages cran).
* gnu/packages/graph.scm (r-igraph): Move from here...
* gnu/packages/cran.scm (r-igraph): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:55 +02:00
zimoun 1dc50e4190
gnu: r-diffusionmap: Move to (gnu packages cran).
* gnu/packages/graph.scm (r-diffusionmap): Move from here...
* gnu/packages/cran.scm (r-diffusionmap): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:49 +02:00
zimoun d3d38bd8f1
gnu: r-adaptivesparsity: Move to (gnu packages cran).
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:48:38 +02:00
zimoun b17ace24ca
gnu: r-codedepends: Comment why it is in bioconductor.scm.
* gnu/packages/bioconductor.scm (r-codedepends): Add comment.
2020-09-11 21:46:51 +02:00
Peter Lo 7e88ee9f02
gnu: Add r-fhtest.
* gnu/packages/bioconductor.scm (r-fhtest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:33:02 +02:00
Peter Lo 655c4bb25c
gnu: Add r-interval.
* gnu/packages/bioconductor.scm (r-interval): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:01:30 +02:00
Peter Lo 962c7ceff5
gnu: Add r-perm.
* gnu/packages/cran.scm (r-perm): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 19:18:46 +02:00
Peter Lo 4a13770003
gnu: Add r-mlecens.
* gnu/packages/cran.scm (r-mlecens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 19:16:51 +02:00
Peter Lo 488001eb3f
gnu: Add r-icens.
* gnu/packages/bioconductor.scm (r-icens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 19:13:58 +02:00
Ricardo Wurmus 19748ea380
gnu: r-tidymodels: Update to 0.1.1.
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1.
[propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and
r-tidytext; add r-modeldata and r-tidyr.
[native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc.
2020-09-11 19:06:47 +02:00
Ricardo Wurmus cecb700853
gnu: r-infer: Update to 0.5.3.
* gnu/packages/cran.scm (r-infer): Update to 0.5.3.
2020-09-11 19:06:47 +02:00
Ricardo Wurmus 6edf558fd0
gnu: Add r-modeldata.
* gnu/packages/cran.scm (r-modeldata): New variable.
2020-09-11 19:06:47 +02:00
Ricardo Wurmus 37e9a7fabf
gnu: r-parsnip: Update to 0.1.3.
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3.
2020-09-11 19:04:10 +02:00
Ricardo Wurmus f5d7f42ae2
gnu: r-tidytext: Update to 0.2.5.
* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5.
[propagated-inputs]: Remove r-stopwords; add r-tibble.
2020-09-11 19:04:06 +02:00
Ricardo Wurmus 0fa58b2488
gnu: r-tidypredict: Update to 0.4.6.
* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6.
2020-09-11 19:04:01 +02:00
Ricardo Wurmus 471f0aacd2
gnu: r-tune: Update to 0.1.1.
* gnu/packages/cran.scm (r-tune): Update to 0.1.1.
[propagated-inputs]: Add r-vctrs.
2020-09-11 19:03:58 +02:00
Ricardo Wurmus dfa2cfeb3e
gnu: r-dials: Update to 0.0.8.
* gnu/packages/cran.scm (r-dials): Update to 0.0.8.
2020-09-11 19:03:54 +02:00
Ricardo Wurmus a1d7ec4893
gnu: r-yardstick: Update to 0.0.7.
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.7.
[propagated-inputs]: Remove r-rcpp.
2020-09-11 19:03:51 +02:00
Ricardo Wurmus b0b24be7b7
gnu: r-workflows: Update to 0.1.3.
* gnu/packages/cran.scm (r-workflows): Update to 0.1.3.
2020-09-11 19:03:46 +02:00
Ricardo Wurmus 820f415174
gnu: r-hardhat: Update to 0.1.4.
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.4.
2020-09-11 19:03:43 +02:00
Peter Lo 23bd6f6ef1
gnu: Add r-tidymodels.
* gnu/packages/cran.scm (r-tidymodels): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 18:29:49 +02:00
Peter Lo 48d40c7717
gnu: Add r-infer.
* gnu/packages/cran.scm (r-infer): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 18:29:49 +02:00
Peter Lo 35f033750f
gnu: Add r-parsnip.
* gnu/packages/cran.scm (r-parsnip): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 18:29:49 +02:00
Peter Lo 8e79e3dd3d
gnu: Add r-tidytext.
* gnu/packages/cran.scm (r-tidytext): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 18:29:49 +02:00