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Author SHA1 Message Date
Ricardo Wurmus 5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
 2020-03-01 23:38:33 +01:00
Ricardo Wurmus e766ba9a52
gnu: r-cicero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
 2020-03-01 23:38:26 +01:00
Ricardo Wurmus 0a30342def
gnu: r-mlinterfaces: Update to 1.66.4. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
 2020-03-01 23:38:19 +01:00
Ricardo Wurmus aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
 2020-03-01 23:38:12 +01:00
Ricardo Wurmus 8351faae8a
gnu: r-chippeakanno: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
 2020-03-01 23:38:06 +01:00
Ricardo Wurmus f73b75e00c
gnu: r-hdf5array: Update to 1.14.3. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.
 2020-03-01 23:37:58 +01:00
Ricardo Wurmus 6c1f5a1b7e
gnu: r-rsamtools: Update to 2.2.3. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.
 2020-03-01 23:37:52 +01:00
Ricardo Wurmus 9bbf3f9de2
gnu: r-edger: Update to 3.28.1. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.
 2020-03-01 23:37:40 +01:00
Ricardo Wurmus efb98dd09d
gnu: gwl: Update to 0.2.1. 
* gnu/packages/package-management.scm (gwl): Update to 0.2.1.
[arguments]: Add phase "fix-tests".
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus 42c7f6e748
gnu: r-nloptr: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus b3be560e23
gnu: r-gplots: Update to 3.0.3. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.3.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus 8bcbb67c17
gnu: r-mvtnorm: Update to 1.1-0. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-0.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus 2589dc4b50
gnu: r-rlang: Update to 0.4.5. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.5.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus fb93e2f539
gnu: r-digest: Update to 0.6.25. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.25.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus 51d36a12b7
gnu: r-nnet: Update to 7.3-13. 
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-13.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus e3eb7ee474
gnu: r-seurat: Update to 3.1.4. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.4.
[propagated-inputs]: Add r-patchwork.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 339fa00a98
gnu: r-wgcna: Update to 1.69. 
* gnu/packages/cran.scm (r-wgcna): Update to 1.69.
[propagated-inputs]: Remove r-robust.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 78acab4818
gnu: r-quanteda: Update to 2.0.0. 
* gnu/packages/cran.scm (r-quanteda): Update to 2.0.0.
[propagated-inputs]: Remove r-lubridate, r-rspectra, and r-spacyr; add
r-jsonlite.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 2fc3575608
gnu: r-gdina: Update to 2.7.9. 
* gnu/packages/cran.scm (r-gdina): Update to 2.7.9.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 0c51197b3c
gnu: r-subplex: Update to 1.6. 
* gnu/packages/cran.scm (r-subplex): Update to 1.6.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus ecbae383d8
gnu: r-rpf: Update to 1.0.3. 
* gnu/packages/cran.scm (r-rpf): Update to 1.0.3.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 2a216f5a5f
gnu: r-dalex: Update to 1.0.1. 
* gnu/packages/cran.scm (r-dalex): Update to 1.0.1.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 79f7e127ea
gnu: r-styler: Update to 1.3.2. 
* gnu/packages/cran.scm (r-styler): Update to 1.3.2.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus cd4a4eafcc
gnu: r-gridgraphics: Update to 0.5-0. 
* gnu/packages/cran.scm (r-gridgraphics): Update to 0.5-0.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 851e576213
gnu: r-protviz: Update to 0.6.3. 
* gnu/packages/cran.scm (r-protviz): Update to 0.6.3.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 5144de4b1d
gnu: r-rvcheck: Update to 0.1.8. 
* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.8.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus d41528b093
gnu: r-rcppannoy: Update to 0.0.15. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.15.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus 19b0b54ed1
gnu: r-mvabund: Update to 4.1.3. 
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.3.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus a0077446a1
gnu: r-manipulatewidget: Update to 0.10.1. 
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.10.1.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus 0fab5a4769
gnu: r-effectsize: Update to 0.2.0. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.2.0.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus 1bd8563322
gnu: r-factominer: Update to 2.3. 
* gnu/packages/cran.scm (r-factominer): Update to 2.3.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus a670564929
gnu: r-tinytex: Update to 0.20. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.20.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus f7dc4f7bfd
gnu: r-uuid: Update to 0.1-4. 
* gnu/packages/cran.scm (r-uuid): Update to 0.1-4.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus d67f83072c
gnu: r-broom: Update to 0.5.5. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.5.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus 353b3515a6
gnu: r-cli: Update to 2.0.2. 
* gnu/packages/cran.scm (r-cli): Update to 2.0.2.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus 8a9d551c8d
gnu: r-sp: Update to 1.4-1. 
* gnu/packages/cran.scm (r-sp): Update to 1.4-1.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus 9e3a089b44
gnu: r-dendextend: Update to 1.13.4. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.4.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus dfa052726a
gnu: r-modelr: Update to 0.1.6. 
* gnu/packages/cran.scm (r-modelr): Update to 0.1.6.
[propagated-inputs]: Add r-tidyselect.
 2020-03-01 23:21:15 +01:00
Ricardo Wurmus ade9158b62
gnu: r-matrix-utils: Update to 0.9.8. 
* gnu/packages/cran.scm (r-matrix-utils): Update to 0.9.8.
 2020-03-01 23:21:15 +01:00
Ricardo Wurmus 975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0. 
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
 2020-03-01 23:21:15 +01:00
Nicolas Goaziou d4388c0bf6
gnu: emacs-relint: Update to 1.14. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.14.
 2020-03-01 22:55:41 +01:00
Nicolas Goaziou 55db5a50e2
gnu: emacs-xr: Update to 1.16. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.16.
 2020-03-01 22:54:46 +01:00
Jan Nieuwenhuizen 2d79250d1a
gnu: qemu-minimal-2.10: Use minimal dependencies from qemu-minimal. 
Without this patch qemu-minimal-2.10 is not really minimal; it depends on
cups, ffmpeg, ghostscript, gstreamer, gtk, spice, ...

* gnu/packages/virtualization.scm (qemu-minimal-2.10)
  [native-inputs]: Inherit from QEMU-MINIMAL instead of QEMU.
  [inputs]: Likewise.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-01 21:51:53 +01:00
Christopher Baines cfe3581426
gnu: guile-squee: Fix the "guile3.0-squee" variant. 
* gnu/packages/guile-xyz.scm (guile3.0-squee): Switch inputs to native-inputs.
 2020-03-01 20:50:33 +00:00
Christopher Baines 63a847cb11
gnu: guile-email: Add "guile3.0-email" variant. 
* gnu/packages/guile-xyz.scm (guile3.0-email): New variable.
 2020-03-01 20:10:21 +00:00
Christopher Baines 945a73d82d
gnu: guile-squee: Add "guile3.0-squee" variant. 
* gnu/packages/guile-xyz.scm (guile3.0-squee): New variable.
 2020-03-01 20:10:21 +00:00
Tobias Geerinckx-Rice aabc895402
gnu: python-construct: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-construct)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice d3eae3f1ec
gnu: warzone2100: Use HTTPS home page. 
* gnu/packages/games.scm (warzone2100)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice 555f3d15b1
gnu: python-sphinx: Use HTTPS home page. 
* gnu/packages/sphinx.scm (python-sphinx)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice f4eee79db2
gnu: libgc: Use HTTPS home page. 
* gnu/packages/bdw-gc.scm (libgc)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00