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Author SHA1 Message Date
Ricardo Wurmus da64f72edd
gnu: r-rmumps: Update to 5.2.1-23. 
* gnu/packages/cran.scm (r-rmumps): Update to 5.2.1-23.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 52d8c140b8
gnu: r-lamw: Update to 2.1.2. 
* gnu/packages/cran.scm (r-lamw): Update to 2.1.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 028166eec9
gnu: r-rcppnumerical: Update to 0.5-0. 
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.5-0.
[native-inputs]: Add r-knitr and r-rmarkdown.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 6264b80731
gnu: r-partykit: Update to 1.2-18. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-18.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 55c0a27187
gnu: r-ape: Update to 5.7-1. 
* gnu/packages/cran.scm (r-ape): Update to 5.7-1.
[propagated-inputs]: Add r-digest.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 42c4356f9c
gnu: r-ggmap: Update to 3.0.2. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 441c60d2b2
gnu: r-gensa: Update to 1.1.8. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.8.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 4235e02dd9
gnu: r-rstpm2: Update to 1.6.2. 
* gnu/packages/cran.scm (r-rstpm2): Update to 1.6.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus 17b68a4ac5
gnu: r-fastmap: Update to 1.1.1. 
* gnu/packages/cran.scm (r-fastmap): Update to 1.1.1.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 29f95b47ec
gnu: r-modelenv: Update to 0.1.1. 
* gnu/packages/cran.scm (r-modelenv): Update to 0.1.1.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus b71f95b08e
gnu: r-readxl: Update to 1.4.2. 
* gnu/packages/cran.scm (r-readxl): Update to 1.4.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 2416e5dcd4
gnu: r-ggalluvial: Update to 0.12.5. 
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.5.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 02cdebebff
gnu: r-climaemet: Update to 1.1.0. 
* gnu/packages/cran.scm (r-climaemet): Update to 1.1.0.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus d1dbfcc4cb
gnu: r-gson: Update to 0.1.0. 
* gnu/packages/cran.scm (r-gson): Update to 0.1.0.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 58e114a702
gnu: r-googlevis: Update to 0.7.1. 
* gnu/packages/cran.scm (r-googlevis): Update to 0.7.1.
[native-inputs]: Add r-rmarkdown.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 332d829c6e
gnu: r-castor: Update to 1.7.8. 
* gnu/packages/cran.scm (r-castor): Update to 1.7.8.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 3556f4319c
gnu: r-cachem: Update to 1.0.7. 
* gnu/packages/cran.scm (r-cachem): Update to 1.0.7.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus ff80f791e9
gnu: r-afpt: Update to 1.1.0.3. 
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.3.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus a28a357675
gnu: r-mutoss: Update to 0.1-13. 
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-13.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 55710837d9
gnu: r-valr: Update to 0.6.7. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.7.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus ab428404de
gnu: r-numbat: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.2.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 9d4e62ccce
gnu: r-memuse: Adjust indentation. 
* gnu/packages/cran.scm (r-memuse): Adjust indentation.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus af861fdead
gnu: r-shadowtext: Update indentation. 
* gnu/packages/cran.scm (r-shadowtext): Adjust indentation.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 257ef3f659
gnu: Add r-mclogit. 
* gnu/packages/cran.scm (r-mclogit): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 8eccc02ec9
gnu: Add r-memisc. 
* gnu/packages/cran.scm (r-memisc): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus ac5011546d
gnu: r-qs: Update to 0.25.5. 
* gnu/packages/cran.scm (r-qs): Update to 0.25.5.
[inputs]: Remove zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus a1fcc6c595
gnu: r-leaflet: Update to 2.1.2. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 2c58e06a17
gnu: r-sf: Update to 1.0-11. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-11.
[inputs]: Remove zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 47bce97778
gnu: r-ggvis: Update to 0.4.8. 
* gnu/packages/cran.scm (r-ggvis): Update to 0.4.8.
[source]: Remove five minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-lodash.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 1b50213ad7
gnu: r-opencpu: Update to 2.2.9. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.9.
[source]: Remove two minified JavaScript files.
[arguments]: Add build phases 'process-javascript.
[native-inputs]: Add esbuild, r-r-rsp, and js-query.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 6b41dccf35
gnu: r-bookdown: Update to 0.33. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.33.
[source]: Delete three minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild, js-clipboard, js-lunarjs, and js-mathquill.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus fce72b3522
gnu: r-haven: Update to 2.5.2. 
* gnu/packages/cran.scm (r-haven): Update to 2.5.2.
[arguments]: Update to link with readstat.
[inputs]: Add zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 40cb3c30fc
gnu: readstat: Update to 1.1.9. 
* gnu/packages/statistics.scm (readstat): Update to 1.1.9.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 5050034b4e
gnu: r-httpuv: Update to 1.6.9. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.9.
[inputs]: Replace libuv with libuv-for-r-httpuv.
[arguments]: Patch Makevars to link with that variant of libuv.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus ef86b0b12e
gnu: Add libuv-for-r-httpuv. 
* gnu/packages/libevent.scm (libuv-for-r-httpuv): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus e72d0d9208
gnu: r-dt: Update to 0.27. 
* gnu/packages/statistics.scm (r-dt): Update to 0.27.
 2023-03-19 16:11:49 +01:00
Lars-Dominik Braun f9702aa9fd
gnu: Add python-brian2. 
* gnu/packages/machine-learning.scm (python-brian2): New variable.
 2023-03-19 11:33:52 +01:00
Lars-Dominik Braun c16add7fd9
gnu: python-pillow: Fix CVE-2022-45199. 
Fixes: <https://issues.guix.gnu.org/issue/61172>

* gnu/packages/python-xyz.scm (python-pillow/security-fixes): New variable.
(python-pillow): Add replacement.
* gnu/packages/patches/python-pillow-CVE-2022-45199.patch: New file.
* gnu/local.mk: Register it.
 2023-03-19 10:57:00 +01:00
Liliana Marie Prikler d7b4ecdb4c
gnu: Add a4pdf. 
* gnu/packages/pdf.scm (a4pdf): New variable.
 2023-03-19 09:25:36 +01:00
Liliana Marie Prikler fa50974134
gnu: komikku: Update to 1.14.0. 
* gnu/packages/gnome.scm (komikku): Update to 1.14.0.
 2023-03-19 09:25:36 +01:00
Ekaitz Zarraga d59eb81b5c
gnu: zig: Build against a baseline CPU. 
* gnu/packages/zig.scm (zig-0.10)[#:configure-flags]: Add
“-DZIG_TARGET_MCPU=baseline”.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-03-19 09:25:36 +01:00
Efraim Flashner c483cc2b9f
gnu: python-dropbox: Update to 11.36.0. 
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.36.0.
[source]: Add snippet to accept newer versions of python-pytest-runner.
 2023-03-19 00:20:36 +02:00
Andreas Enge 99af743311
gnu: python-ipython: Update to 8.5.0. 
This is a conservative update to the first version that passes all tests.
The version 8.8.0 works also, the latest 8.10.0 requires changes to the
recipe.

* gnu/packages/python-xyz.scm (python-ipython): Update to 8.5.0.
 2023-03-18 20:27:05 +01:00
Liliana Marie Prikler edd0ec7c2f
gnu: packagekit: Fix installation directory for bash completions. 
Without this patch, packagekit would attempt to install bash completions
to another store directory, invoking pkexec in the process and raising
a cryptic error.

* gnu/packages/freedesktop.scm (packagekit)[#:phases]: Add
‘fix-bash-completion-dir’.

Co-authored-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2023-03-18 18:55:36 +01:00
Kaelyn Takata 2a34300240
gnu: glib-networking: Fix 32-bit builds. 
* gnu/packages/gnome.scm (glib-networking): Remove obsolete patch.
* gnu/packages/patches/glib-networking-32-bit-time.patch: Remove file.
* gnu/local (dist_patch_DATA): Remove it.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2023-03-18 18:27:09 +01:00
Andreas Enge de3588965c
Revert "* gnu/packages/gnome.scm (glib-networking): Remove obsolete patch." 
This reverts commit cc56be2f38.

The commit message was malformed.
 2023-03-18 18:25:30 +01:00
Arun Isaac 34fed18169
gnu: Add tissue. 
* gnu/packages/web.scm (tissue): New variable.
 2023-03-18 17:23:32 +00:00
Andreas Enge 97c20aa1d1
gnu: python-pyqt5-sip: Update to 12.11.1. 
* gnu/packages/qt.scm (python-pyqt5-sip): Update to 12.11.1.
 2023-03-18 15:34:50 +01:00
Lars-Dominik Braun d9a31cd34e
gnu: python-coveralls: Disable failing test and relax version requirements. 
* gnu/packages/python-check.scm (python-coveralls)[source]: Relax version
requirement for python-coverage.
[arguments]: Disable test_reporter_with_branches, which fails for
unknown reasons.
 2023-03-18 10:41:35 +01:00
Lars-Dominik Braun a7c96167ae
gnu: python-typeguard: Python 3.10 compatibility. 
* gnu/packages/patches/python-typeguard-python3.10.patch: New file.
* gnu/local.mk: Register it.
* gnu/packages/python-xyz.scm (python-typeguard): Use it.
 2023-03-18 10:41:35 +01:00