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Author SHA1 Message Date
Guillaume Le Vaillant 556daf642a
gnu: Add cl-deflate. 
* gnu/packages/lisp-xyz.scm (sbcl-deflate, cl-deflate, ecl-deflate): New
  variables.
 2020-07-16 17:08:27 +02:00
Guillaume Le Vaillant 31c67a8525
gnu: Add cl-com.gigamonkeys.binary-data. 
* gnu/packages/lisp-xyz.scm (sbcl-com.gigamonkeys.binary-data,
  cl-com.gigamonkeys.binary-data, ecl-com.gigamonkeys.binary-data): New
  variables.
 2020-07-16 16:58:42 +02:00
Guillaume Le Vaillant 2020a0567b
gnu: Add cl-tga. 
* gnu/packages/lisp-xyz.scm (sbcl-tga, cl-tga, ecl-tga): New variables.
 2020-07-16 16:48:25 +02:00
Ricardo Wurmus d57ce2024b
gnu: r-quantreg: Update to 5.61. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.61.
[propagated-inputs]: Add r-conquer.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus c4dfd2bf62
gnu: r-r-rsp: Update to 0.44.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.44.0.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus c85c85d67c
gnu: r-tibble: Update to 3.0.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.3.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus 9fcf3d92a0
gnu: r-rlang: Update to 0.4.7. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.7.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus 2d2b5d60f8
gnu: r-brms: Update to 2.13.3. 
* gnu/packages/cran.scm (r-brms): Update to 2.13.3.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus 22df7543b1
gnu: r-gamlss: Update to 5.1-7. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.1-7.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus 88804120c3
gnu: r-gamlss-dist: Update to 5.1-7. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-7.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus 2762d722c5
gnu: r-pillar: Update to 1.4.6. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.6.
[propagated-inputs]: Add r-ellipsis and r-lifecycle.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 4d639b61cf
gnu: r-mice: Update to 3.10.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.10.0.
[propagated-inputs]: Add r-generics.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus df952ca338
gnu: r-broom: Update to 0.7.0. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.0.
[propagated-inputs]: Remove r-nlme and r-reshape2; add r-ellipsis, r-glue, and
r-rlang.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus b7f051db14
gnu: r-rhdf5lib: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.1.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 82eafe32a2
gnu: r-qtl2: Update to 0.22-11. 
* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-11.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 16e16586d2
gnu: r-genomicfeatures: Update to 1.40.1. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.1.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 02f3a622e2
gnu: r-summarizedexperiment: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.2.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus a9a912805a
gnu: r-activepathways: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2.
[propagated-inputs]: Remove r-metap.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 1a7d1c54d4
gnu: r-rsubread: Update to 2.2.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus ba663a331b
gnu: Add r-conquer. 
* gnu/packages/cran.scm (r-conquer): New variable.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 021ad446fc
gnu: r-cairo: Update to 1.5-12.2. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.2.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 79f7cd99da
gnu: r-gplots: Update to 3.0.4. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.4.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus f12fd76912
gnu: r-xml: Update to 3.99-0.4. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.4.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus f7b05fb978
gnu: r-tibble: Update to 3.0.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.2.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus 59b88ab39e
gnu: r-svglite: Update to 1.2.3.2. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.3.2.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus 0091d815ad
gnu: r-rstan: Update to 2.21.1. 
* gnu/packages/cran.scm (r-rstan): Update to 2.21.1.
[propagated-inputs]: Add r-rcppparallel and r-v8.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus 67462c7be9
gnu: r-loo: Update to 2.3.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.3.0.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus 3cafe807b2
gnu: r-rstantools: Update to 2.1.1. 
* gnu/packages/cran.scm (r-rstantools): Update to 2.1.1.
[propagated-inputs]: Add r-rcppparallel.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus 8aff0a206c
gnu: r-iheatmapr: Update to 0.5.0. 
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.5.0.
[propagated-inputs]: Remove r-plyr and r-s4vectors.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus e9d906748d
gnu: r-quanteda: Update to 2.1.0. 
* gnu/packages/cran.scm (r-quanteda): Update to 2.1.0.
[propagated-inputs]: Add r-digest.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus ed8c14589c
gnu: r-nonnest2: Update to 0.5-5. 
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-5.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus 215475907a
gnu: r-future: Update to 1.18.0. 
* gnu/packages/cran.scm (r-future): Update to 1.18.0.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus e1bfb22e6c
gnu: r-doby: Update to 4.6.7. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.7.
[propagated-inputs]: Add r-dplyr and r-ggplot2.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus fbd4582a91
gnu: r-cubature: Update to 2.0.4.1. 
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.1.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus 1fdd9ebf77
gnu: r-getoptlong: Update to 1.0.2. 
* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus 1b5c263bfc
gnu: r-rcpp: Update to 1.0.5. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.5.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus b80f141f86
gnu: r-delayedmatrixstats: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.1.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus 15597255e6
gnu: r-rhdf5: Update to 2.32.2. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus 2d9c897dd0
gnu: r-variancepartition: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus f5340e0045
gnu: Add tao. 
* gnu/packages/patches/tao-add-missing-headers.patch,
gnu/packages/patches/tao-fix-parser-types.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (tao): New variable.
 2020-07-16 10:07:57 +02:00
Tobias Geerinckx-Rice 03f9a8c35b
Revert "gnu: rust: Add SSL native search paths." 
This reverts commit ba1e4ce256.
 2020-07-15 23:22:18 +02:00
Leo Famulari 7233b19fde
gnu: Transmission: Update to 3.0.0. 
* gnu/packages/bittorrent.scm (transmission): Update to 3.0.0.
[source]: Remove obsolete patch.
* gnu/packages/patches/transmission-CVE-2018-10756.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-07-15 15:38:03 -04:00
Oleg Pykhalov 37fea3c30a
tests: zabbix: Fix typo in comment. 
* gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Fix typo in
comment.
 2020-07-15 22:15:50 +03:00
Oleg Pykhalov be6835765b
gnu: zabbix-agentd: Update to 5.0.1. 
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.0.1.
(arguments)[#:phases]<install-front-end>: Update front-end path.
 2020-07-15 22:15:49 +03:00
Tobias Geerinckx-Rice 209bfe60ee
gnu: bind: Update to 9.16.5. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.5.
 2020-07-15 21:11:11 +02:00
Marius Bakke 1507636906
gnu: python-tinycss2: Fix test failure. 
Fixes <https://bugs.gnu.org/42372>.
Reported by Michael Rohleder <mike@rohleder.de>.

* gnu/packages/patches/python-tinycss2-flake8-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-web.scm (python-tinycss2)[source](patches): New field.
 2020-07-15 20:29:26 +02:00
Marius Bakke dec0217f6e
gnu: python-shiboken-2, python-pyside-2: Update to 5.14.2.3. 
* gnu/packages/patches/qtbase-absolute-runpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/qt.scm (qtbase/next): New variable.
* gnu/packages/qt.scm (python-shiboken-2): Update to 5.14.2.3.
[source](uri): Adjust for tarball rename.
[inputs]: Use the default CLANG-TOOLCHAIN.
(python-pyside-2)[inputs]: Likewise.
(python-pyside-2-tools)[inputs]: Change from QTBASE to QTBASE/NEXT.
 2020-07-15 20:08:10 +02:00
Tobias Geerinckx-Rice b514478cb9
gnu: gparted: Use the Glib-or-GTK build system. 
Fixes <https://issues.guix.gnu.org/38544>.

* gnu/packages/disk.scm (gparted)[build-system]: Use
glib-or-gtk-build-system.
 2020-07-15 19:41:40 +02:00
Tobias Geerinckx-Rice 7af2b55d7b
gnu: protobuf: Update to 3.12.3. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.12.3.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice ba1e4ce256
gnu: rust: Add SSL native search paths. 
* gnu/packages/rust.scm (rust-1.19)[native-search-paths]: Add entries
for SSL_CERT_DIR and SSL_CERT_FILE.

Reported by Kimapr[m] in #guix.
 2020-07-15 19:41:39 +02:00