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127020 commits

Author SHA1 Message Date
Ricardo Wurmus 75cac71be2
gnu: r-variantfiltering: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.38.0.

Change-Id: I598d983c5d7e0f45da04c14f2fc6453e6ef88d98
2023-11-03 22:49:24 +01:00
Ricardo Wurmus 3c93fab37f
gnu: r-tilingarray: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.80.0.

Change-Id: I78c5d57af6117ce78232ebfa065416fd7d2a6cc4
2023-11-03 22:49:24 +01:00
Ricardo Wurmus 43ea1c324a
gnu: r-wavcluster: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.36.0.

Change-Id: I24818db21be07d1f5476dc5abea2b067d9b6623c
2023-11-03 22:49:24 +01:00
Ricardo Wurmus fb6da71504
gnu: r-reqon: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.48.0.

Change-Id: Idd4e403b3ed3ca84cad80657a46fd4c9e0c1582d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus b22318e0af
gnu: r-seqbias: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.50.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: Ibf4e49bffefec0eb6a1e4e6d1c29383c37f8bbfb
2023-11-03 22:49:24 +01:00
Ricardo Wurmus a36fba9d1b
gnu: r-bigmelon: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.28.0.

Change-Id: Iaf3adc3d1d05923bd031c52c03d1fc7a76955720
2023-11-03 22:49:24 +01:00
Ricardo Wurmus 86bc7de016
gnu: r-gdsfmt: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.38.0.

Change-Id: If6494e1a21fcde1e63ace19746346368234a8f6b
2023-11-03 22:49:24 +01:00
Ricardo Wurmus b90a54605a
gnu: r-watermelon: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.8.0.

Change-Id: Iefca41487698e294fb369f4016f67fb147464e72
2023-11-03 22:49:24 +01:00
Ricardo Wurmus ef52ea9c6d
gnu: r-roc: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.78.0.

Change-Id: I54dc89ba0e9bc6c3274da7af2e43191c2a6f9e2f
2023-11-03 22:49:24 +01:00
Ricardo Wurmus 5fa4d39b7a
gnu: r-genie3: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.24.0.

Change-Id: I5fd664aecec4037793a190326936c11316499f8d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus 8ef81e22b3
gnu: r-circrnaprofiler: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.16.0.

Change-Id: I31457048a3c1659b0765ae1732f492567c7397dd
2023-11-03 22:49:24 +01:00
Ricardo Wurmus 5e268c72a4
gnu: r-cicero: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.20.0.

Change-Id: I23c4a69ca3b7b97811fb4b919646a2d998cb931e
2023-11-03 22:49:24 +01:00
Ricardo Wurmus d73af33e49
gnu: r-chicago: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.30.0.

Change-Id: Id395b5593684d98ddfe9af7a65fb03c2be46d43c
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 93322f6240
gnu: r-depecher: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.18.0.
[propagated-inputs]: Add r-collapse.

Change-Id: I24ec77ec5ec4f85e21eb00de3494106876c0ec40
2023-11-03 22:49:23 +01:00
Ricardo Wurmus a32a12ec27
gnu: r-flowsom: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.10.0.

Change-Id: I18e214006f6c4ae17d6ddc53a744e9d7b1747260
2023-11-03 22:49:23 +01:00
Ricardo Wurmus c9533f5df9
gnu: r-cytoml: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.14.0.

Change-Id: Ibfe47c6d75d500b0f89fd1f8abf3d670035136d3
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 0d5d1163d7
gnu: r-opencyto: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.14.0.

Change-Id: I888c78a43379b91be3ce60e761e6b1b199fcf86d
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 127590d8ad
gnu: r-flowstats: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.0.
[propagated-inputs]: Add r-clue.

Change-Id: Ib1c5eb4d5122bf25ca0e68d4404777cc8406526a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus d97e582d89
gnu: r-flowworkspace: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.0.

Change-Id: I97248860f6b887d00787e22e9ac873123ba1f2c2
2023-11-03 22:49:23 +01:00
Ricardo Wurmus e6188fe703
gnu: r-rprotobuflib: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.14.0.

Change-Id: I91320a80b921f1dc7b9fb858465328be105170aa
2023-11-03 22:49:23 +01:00
Ricardo Wurmus ca1998e47d
gnu: r-flowclust: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.40.0.

Change-Id: I50c0766d93b13489adfe800d2d06b11545bfa43b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus be37da9b54
gnu: r-flowviz: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.66.0.

Change-Id: I118ccc0471534316abff95cd1ab9eabd859f6831
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 32a16be414
gnu: r-ggcyto: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.30.0.

Change-Id: I961a281d462a3e4105b58ba692590812fe375a3f
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 451730851d
gnu: r-ncdfflow: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.48.0.

Change-Id: Ifa2ccc14f1f4b23fe582f31c219eac0bb5d0b9db
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 3ef5cbf874
gnu: r-flowmeans: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.62.0.

Change-Id: Ia9a88f9dbb6f061657444da54312c1303002c578
2023-11-03 22:49:23 +01:00
Ricardo Wurmus bd5d74cbdf
gnu: r-flowcore: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.0.

Change-Id: Ib1498e1d9fa450ef256487fe5137a0e2a4cf1fea
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 10d2d6225d
gnu: r-cytolib: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.0.

Change-Id: Ib7dba25c2a9a7ccd400bf0f487f2cb01914411ad
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 196e98c19b
gnu: r-consensusclusterplus: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.66.0.

Change-Id: I96e93fff95f137a17c727219c53013cb02c22017
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 8c7c2359f5
gnu: r-flowai: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.32.0.

Change-Id: I7ef9deac6a209985c3fce5f6de1c36828c8dd3d9
2023-11-03 22:49:23 +01:00
Ricardo Wurmus d1e907e41e
gnu: r-rsubread: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.0.

Change-Id: Iae1f568a867b22833df9927f856c75e6d7cd4d48
2023-11-03 22:49:23 +01:00
Ricardo Wurmus bea6315bb8
gnu: r-annotatr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.28.0.

Change-Id: I29292f62456e22cfdcf6d00a30c279270380b26e
2023-11-03 22:49:23 +01:00
Ricardo Wurmus d29c9b145b
gnu: r-biosigner: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.30.0.

Change-Id: Iabd8f36615e8196e7e3df266ba8dd721bb398fba
2023-11-03 22:49:23 +01:00
Ricardo Wurmus c73f59a9d2
gnu: r-ropls: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.34.0.

Change-Id: Id26eafa238908b529270ffd1470102f677f10c65
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 69b935ebc1
gnu: r-multidataset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.30.0.

Change-Id: Ib3dcef1bfd56a01dee0cd6ba2a1ebefb65bb1e5a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 633560c283
gnu: r-birewire: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.34.0.

Change-Id: Ib3971ff76cc414462c14ab739855d14c3ec40df7
2023-11-03 22:49:23 +01:00
Ricardo Wurmus ffccc882fa
gnu: r-rqc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.36.0.

Change-Id: I7ccebf76e59f39512d24399e78a1422644cd9f6b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus a6c729f6ac
gnu: r-quasr: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.42.1.

Change-Id: Ia7d0cb971a413b41864170e464a1533ee66d4ae7
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 6a62e84948
gnu: r-rhisat2: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.18.0.

Change-Id: I79c54d0826ca2b6284b9ef8682f58042e3d81443
2023-11-03 22:49:23 +01:00
Ricardo Wurmus e92cb01bc3
gnu: r-sgseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.36.0.

Change-Id: I8cbf81533b9153ce237819d17241928aced30f2b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 0f4db0e2de
gnu: r-rbowtie: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.42.0.

Change-Id: Ifc4c80de76e82cfc93bf848d6a08460ca81023db
2023-11-03 22:49:23 +01:00
Ricardo Wurmus d2ee7821d1
gnu: r-iclusterplus: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.38.0.

Change-Id: I546a8dabf09008ba0a35c3523f8956fe59f573c8
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 77491d9dc4
gnu: r-biocfilecache: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.10.1.

Change-Id: I5e71ba6fe180d64679b163b2863bd96fc1ca77ae
2023-11-03 22:49:23 +01:00
Ricardo Wurmus 6b18a2b370
gnu: r-arrmnormalization: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.42.0.

Change-Id: I54b1101547a4e360dd9e5a24425b42bad3cc77dd
2023-11-03 22:49:22 +01:00
Ricardo Wurmus f059ade231
gnu: r-progeny: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.24.0.

Change-Id: Ib4f1cfd6c92defe302bf07fe4b3ca4ac4df37fab
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 12a25de450
gnu: r-rbowtie2: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.8.0.

Change-Id: If97d5baf3dea63021e5f44c4bced43cd10070eda
2023-11-03 22:49:22 +01:00
Ricardo Wurmus cd3f0aa976
gnu: r-zfpkm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.24.0.

Change-Id: I5decb580a3fcfe73ecedcfe0acb4f8a5410f9ac3
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 9cd71a55e8
gnu: r-zinbwave: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.24.0.

Change-Id: Ibf32bcbf8919363ff413f4abf96473179a4e9d55
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 3393f89fdc
gnu: r-webbioc: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.74.0.

Change-Id: I7fdd670151d5aa49b1a99bd5d6dd2c107db79c1f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 0c0d4e9d74
gnu: r-widgettools: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.80.0.

Change-Id: Iaa880fa331e4ddeec45ef36f68ab3e7e4003a046
2023-11-03 22:49:22 +01:00
Ricardo Wurmus e83637da77
gnu: r-wiggleplotr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.26.0.

Change-Id: I971b261e23b896e51618fa4a064152891ba8d03f
2023-11-03 22:49:22 +01:00