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Author SHA1 Message Date
Ricardo Wurmus 5103da059a
gnu: r-msnbase: Update to 2.16.1. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus 2596200514
gnu: r-methylkit: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus 3f7e96acc7
gnu: r-delayedarray: Update to 0.16.1. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus 9b66b8017d
gnu: r-biomart: Update to 2.46.3. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.3.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus 8e25b1acf9
gnu: r-edger: Update to 3.32.1. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus 809f725977
gnu: r-iranges: Update to 2.24.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 88fd569ddf
gnu: r-s4vectors: Update to 0.28.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus babb2dce34
gnu: r-systempiper: Update to 1.24.3. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.3.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus d3ac91dd9d
gnu: r-gseabase: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 074d142ab6
gnu: r-genefilter: Update to 1.72.1. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 311bb4bc3d
gnu: r-delayedmatrixstats: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.3.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 8acfd9f3d4
gnu: r-sparsematrixstats: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.2.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus de4fc49270
gnu: r-scran: Update to 1.18.5. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.5.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus cf3e703820
gnu: r-scuttle: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.4.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 79d51ffeca
gnu: r-beachmat: Update to 2.6.4. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus a1357422c3
gnu: r-rhdf5lib: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus f7947f8991
gnu: r-hdf5array: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 18ebacaa1c
gnu: r-preprocesscore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus da109ae738
gnu: r-chemminer: Update to 3.42.1. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 6f37c3ea40
gnu: r-gdsfmt: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 9470f901d9
gnu: r-cytolib: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 691178d67b
gnu: r-multidataset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 6d0709231f
gnu: r-clusterprofiler: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus ebf9ad7984
gnu: r-enrichplot: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 669ea5ab09
gnu: r-matrixgenerics: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 61609fb88e
gnu: r-diffbind: Update to 3.0.13. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13.
 2021-02-11 21:33:36 +01:00
Leo Famulari a18492118c
gnu: OpenLDAP: Update to 2.4.57 [security fixes]. 
Fixes CVE-2020-{36221,36222,36223,36224,36225,36226,36226,36228,36229,36230}.

* gnu/packages/openldap.scm (openldap-2.4.57): New variable.
(openldap)[replacement]: New field.
 2021-02-11 15:02:53 -05:00
Nicolas Goaziou 7f891056d4
gnu: Add wob. 
* gnu/packages/xdisorg.scm (wob): New variable.
 2021-02-11 20:54:04 +01:00
Nicolas Goaziou cf95ef7f44
gnu: Add gammastep. 
* gnu/packages/xdisorg.scm (gammastep): New variable.
 2021-02-11 20:50:39 +01:00
Julien Lepiller c5dc87fee8
gnu: Add font-cozette. 
* gnu/packages/fonts.scm (font-cozette): New variable.
 2021-02-11 17:51:50 +01:00
Julien Lepiller 7cabeb80d4
gnu: Add python-crayons. 
* gnu/packages/python-xyz.scm (python-crayons): New variable.
 2021-02-11 17:50:16 +01:00
Nicolas Goaziou 3ff9779e83
gnu: grammalecte: Update to 2.1.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 2.1.0.
 2021-02-11 16:14:39 +01:00
Efraim Flashner ab5fa99ab4
gnu: python-dropbox: Update to 11.2.0. 
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.2.0.
 2021-02-11 16:29:47 +02:00
Efraim Flashner e81457aaa6
gnu: dbxfs: Update to 1.0.51. 
* gnu/packages/file-systems.scm (dbxfs): Update to 1.0.51.
 2021-02-11 16:28:37 +02:00
Nicolas Goaziou c207a8ac49
gnu: texmacs: Update to 1.99.18. 
* gnu/packages/text-editors.scm (texmacs): Update to 1.99.18.
 2021-02-11 15:15:23 +01:00
Nicolas Goaziou 8738c65b85
gnu: lyx: Update to 2.3.6.1. 
* gnu/packages/tex.scm (lyx): Update to 2.3.6.1.
 2021-02-11 15:11:57 +01:00
Nicolas Goaziou 8542d6292b
gnu: python-duniterpy: Update to 0.61.0. 
* gnu/packages/finance.scm (python-duniterpy): Update to 0.61.0.
 2021-02-11 14:50:04 +01:00
Nicolas Goaziou 08dae88f55
gnu: musescore: Update to 3.6.2. 
* gnu/packages/music.scm (musescore): Update to 3.6.2.
 2021-02-11 14:32:46 +01:00
Nicolas Goaziou cf92f22be8
gnu: emacs-ebdb: Update to 0.6.22. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.6.22.
 2021-02-11 14:27:07 +01:00
Ryan Prior 91989591bc
gnu: visidata: Update to 2.2.1. 
* gnu/packages/visidata.scm (visidata): Update to 2.2.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 19:55:38 +08:00
Ryan Prior ecbcbd5359
gnu: esbuild: Update to 0.8.43. 
* gnu/packages/web.scm (esbuild): Update to 0.8.43.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-02-11 13:17:08 +02:00
Pierre Neidhardt 1b62e3ab42
gnu: emacs-ztree: Update to 20210210. 
* gnu/packages/emacs-xyz.scm (emacs-ztree): Update to 20210210.
 2021-02-11 12:01:53 +01:00
Stefan Reichör 91689b9e08
gnu: Add tiramisu. 
* gnu/packages/gnome-xyz.scm (tiramisu): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 18:15:26 +08:00
Efraim Flashner f72ff06ef8
gnu: dropbear: Unbundle libraries. 
* gnu/packages/ssh.scm (dropbear)[source]: Add snippet to remove
libtommath, libtomcrypt.
[arguments]: Add configure-flag to not use bundled libraries.
[inputs]: Add libtomcrypt, libtommath.
 2021-02-11 12:04:37 +02:00
Efraim Flashner c9c68344ba
gnu: libtomcrypt: Patch pkg-config file to pull libtommath. 
* gnu/packages/multiprecision.scm (libtomcrypt)[arguments]: Adjust
'prepare-build phase to patch libtomcrypt.pc to link tommath.
 2021-02-11 12:04:37 +02:00
Lars-Dominik Braun a643deac2d
environment: Allow starting from existing profile. 
* guix/scripts/environment.scm (%options): Add -p/--profile switch.
(show-help): Document new switch.
(guix-environment): Handle new 'profile switch.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:59:07 +08:00
Efraim Flashner 4b62be5ca4
gnu: Add libtomcrypt. 
* gnu/packages/multiprecision.scm (libtomcrypt): New variable.
 2021-02-11 11:33:15 +02:00
Léo Le Bouter 78bbf6c443
gnu: lz4: Disable parallel testing. 
* gnu/packages/compression.scm (lz4)[arguments]: Set "#:parallel-tests?"
keyword argument to "#f".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:25:08 +08:00
Léo Le Bouter 4767ab4bf6
gnu: miredo: Fix creation of .pid file. 
* gnu/packages/networking.scm (miredo)[arguments]: Add "--localstatedir=/var"
to #:configure-flags and add 'do-not-create-/run phase to #:phases to remove
code that tries to create a directory inside "@localstatedir@" during install.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:18:15 +08:00
John Doe 988ac06ce8
gnu: vim: Fix test_signals test. 
* gnu/packages/vim.scm (vim)[arguments]: Add "CFLAGS=-D_REENTRANT" to

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:12:17 +08:00