Commit Graph

132997 Commits

Author SHA1 Message Date
Florian Pelz bc6840316c
system: default-bash-profile: Add Guix Home search paths as well.
Ordinary .guix-profile is searched already.  Also this makes desktop
environments find packages installed in Guix Home.

* gnu/system/shadow.scm (%default-bash-profile): Add Home search paths.
2024-02-28 16:55:20 +01:00
Saku Laesvuori 85aa30c53d
gnu: kitsas: Update to 5.4.1
* gnu/packages/finance.scm (kitsas): Update to 5.4.1.
[inputs, arguments]: Adapt to building with Qt6. Disable building of tests.

Change-Id: I968579d762ebecef9f9e8b602682587a054c41ad
Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-02-28 16:34:58 +01:00
Oleg Pykhalov 1536853d5e
gnu: qbittorrent: Update to 4.6.3.
* gnu/packages/bittorrent.scm (qbittorrent)[version]: Update to 4.6.3.
[inputs]: Use libtorrent-rasterbar 2.0.9.
2024-02-28 17:15:56 +03:00
Ricardo Wurmus 2b534b699e
gnu: emacs-project-x: Update to 0.1.6-0.eafc982.
* gnu/packages/emacs-xyz.scm (emacs-project-x): Update to 0.1.6-0.eafc982.

Change-Id: I692a3813fbbedcd5c2c36f8d9685efdbf57fe530
2024-02-28 15:09:11 +01:00
Ricardo Wurmus a052882c03
gnu: Add emacs-project-tab-groups.
* gnu/packages/emacs-xyz.scm (emacs-project-tab-groups): New variable.

Change-Id: If190fa02490ce952512ea3abf3dc4b3f990778a5
2024-02-28 14:54:09 +01:00
Efraim Flashner f29f80c194
Merge branch 'rust-team'
Change-Id: Iee31c5de29c357c822f60df4fa8ce758779eb349
2024-02-28 12:18:45 +02:00
Efraim Flashner c034088e37
gnu: bowtie1: Enable cross-compiling.
* gnu/packages/bioinformatics.scm (bowtie1)[arguments]: Adjust
make-flags to enable cross-compiling.

Change-Id: I6f5696e5ad6a1ea5b3f79e8dbbd162f0fe8d4905
2024-02-28 11:50:05 +02:00
Efraim Flashner 9d882d2ef5
gnu: bowtie1: Enable building on more systems.
* gnu/packages/bioinformatics.scm (bowtie1)[arguments]: Add make-flag to
disable searching for cpu features on non-x86 systems.
[supported-systems]: Enable all 64-bit supported systems.

Change-Id: Ice30df945ba154e39cd58a91847329e81038a3af
2024-02-28 11:46:14 +02:00
Efraim Flashner aa1d419586
gnu: bowtie1: Update to 1.3.1.
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.1.
[arguments]: Add test-target.
[inputs]: Use newer tbb.

Change-Id: I7af6aa248e5db9f91ce84fba9ba741621b110479
2024-02-28 11:35:27 +02:00
Efraim Flashner 7947d47c9b
gnu: gnucash: Update to 5.5.
* gnu/packages/gnucash.scm (gnucash): Update to 5.5.
(gnucash-docs): Update to 5.5.

Change-Id: I3c188c952afde07fce80648a5f99c84648ec6a3a
2024-02-28 09:50:42 +02:00
Efraim Flashner acdf26f1c6
gnu: gst-plugins-bad: Skip camerabin test on aarch64-linux.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Adjust custom
'adjust-tests phase to skip the camerabin test on aarch64-linux.

Change-Id: Ic69a19252bee5e63ff94bc0d3159360937ee81c4
2024-02-28 09:33:45 +02:00
Sharlatan Hellseher 8c0282cf54
gnu: python-cdflib: Update to 1.2.4.
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.4.

Change-Id: If6b654bf4bfc0e195055e03fddd22bb376e15920
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher b1a60ed368
gnu: python-stcal: Update to 1.6.0.
* gnu/packages/astronomy.scm (python-stcal): Update to 1.6.0.

Change-Id: I94667375f4d2d14be6b3d2bdb9beaefbea3a554d
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher 7f6ba88609
gnu: python-drizzle: Update to 1.15.0.
* gnu/packages/astronomy.scm (python-drizzle): Update to 1.15.0.
[native-inputs]: Remove python-flake8.

Change-Id: Id872c5ac904a6856fd5d9061b34f36cbfdf1645e
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher 489bdbb87e
gnu: Add python-ginga.
* gnu/packages/astronomy.scm (python-ginga, ginga-qt5): New variables.

Change-Id: I51358b4b64241c78f4bbc7fa16fdd2721ddc0d28
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher adb9dc2a67
gnu: Add python-radiospectra.
* gnu/packages/astronomy.scm (python-radiospectra): New variable.

Change-Id: I98f488671a16ce8e937a76f00b58e70119b7760a
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher a5cf84ded9
gnu: Add python-sunpy-soar.
* gnu/packages/astronomy.scm (python-sunpy-soar): New variable.

Change-Id: I6e7dd8cb7380df396720fda13f549858d2be440d
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher 691a732cfd
gnu: Add python-extinction.
* gnu/packages/astronomy.scm (python-extinction): New variable.

Change-Id: I0f8877f8c79f6dd03150d92269c238cd706cc0ba
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher 9a33695a15
gnu: python-poliastro: Relax requirements.
* gnu/packages/astronomy.scm (python-poliastro) [arguments] <#:phases>:
Add 'relax-requirements phase.

Change-Id: Idb75f1ee9e0b9646024fab0a1d17ea50ca63a7f5
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher 55ded0719c
gnu: python-astroml: Ignore some failing tests.
* gnu/packages/astronomy.scm (python-astroml) [arguments]
<#:test-flags>: Disable some tests which are not compatible with Astropy
6.0.0.

Change-Id: I92f207e1e20a80de8904ee04aaba11469d9249b0
2024-02-27 22:52:00 +00:00
Sharlatan Hellseher 0330bb8b68
gnu: python-sunpy: Speed up tests and relax requirements.
* gnu/packages/astronomy.scm (python-sunpy): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.
<#:phases>: Add 'relax-requirements.

Change-Id: I67c3308b8c5e9b878377f2175f74f1c469a43610
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher 6b0551a6bb
gnu: python-spectral-cube: Speed up tests.
* gnu/packages/astronomy.scm (python-spectral-cube): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.
[propagated-inputs]: Remove python-aplpy.
[native-inputs]: Add python-pytest-xdist.

Change-Id: Icd5afb95ea64406a2f61e4d395bfe503c668cf12
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher b515ca6eb8
gnu: python-roman-datamodels: Speed up tests.
gnu/packages/astronomy.scm (python-roman-datamodels): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I02b9e04a2f37fe05dc372c902b22d03da8f79605
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher 5d692fcc25
gnu: python-regions: Speed up tests.
* gnu/packages/astronomy.scm (python-regions): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.
[native-inputs]: Add python-pytest-xdist.

Change-Id: Ib0c50fa7c357c70ea78d803428a39f6d6ec3c2e7
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher 028cd76fb3
gnu: python-poppy: Speed up tests.
* gnu/packages/astronomy.scm (python-poppy): Speed up tests.
[arguments] <#:test-flags>: Add with "-n" option.
[native-inputs]: Add python-pytest-xdist and python-scikit-image.

Change-Id: Ic72b1c7c700204cc91e00dcc5a0706859420109b
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher 2d3a898d89
gnu: python-photutils: Speed up tests
* gnu/packages/astronomy.scm (python-photutils): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I3eff6c4ac4f6c3d8367179e1e8cdf55bbf1c03cc
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher 8019bcad0b
gnu: python-asdf-coordinates-schemas: Speed up tests.
* gnu/packages/astronomy.scm (python-asdf-coordinates-schemas): Speed up
tests.
[arguments] <#:test-flags>: Add it with "-n" option.
[native-inputs]: Add python-pytest-xdist.
[propagated-inputs]: Swap python-asdf to python-asdf-3.0.

Change-Id: I0cf8aa077dbfa28e3473e5c49ab420426038884f
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher 09bfc8c37e
gnu: python-asdf-astropy: Speed up tests.
* gnu/packages/astronomy.scm (python-asdf-astropy): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.

Change-Id: Icb2efbe6d9fa6f5154fa81189a3d0127f7d26568
2024-02-27 22:51:59 +00:00
Sharlatan Hellseher e6c6e1b8a4
gnu: python-asdf: Speed up tests.
* gnu/packages/astronomy.scm (python-asdf): Enable parallel tests to
speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I5a369e8f3ca43b9ba88c1053d0c55d218e6adc43
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher 25f7db97c3
gnu: python-aplpy: Disable tests.
There is upstream issue https://github.com/aplpy/aplpy/issues/492 to
make package compatible wit astropy v6.0. Keep package and make it
buildable for now.

* gnu/package/astronomy.scm (python-aplpy) [arguments] <#:tests?>
Disable it.  <#:phases?> Delete 'sanity-check to keep package buildable.

Change-Id: If022887a5359ab9287286770d52933319a023ff0
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher 5e1e44b25f
gnu: libpasastro: Remove system constrains.
* gnu/packages/astronomy.scm (libpasastro) [supported-systems]: Remove
it.
[arguments] <#:make-flags>: Add attempt to build on RISCV.

Change-Id: I6dbc843ec25fca46b7c9501e21cc8fba1e9d7bcb
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher c1b47e8bcb
gnu: python-stdatamodels: Update to 1.9.1.
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.9.1.

Change-Id: Ib07e70b62ae904765b2c38a1a78a0c5575d36de1
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher d599a5d68e
gnu: python-skyfield: Update to 1.48.
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.48.

Change-Id: I4f94ec7c8cbea3af325fff81d570ef044f710f71
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher 95ea559408
gnu: python-rad: Enable tests.
* gnu/packages/astronomy.scm (python-rad) [arguments] <#:test-flags>:
Enable most of the tests, ignore the one introducing cycle.
[native-inputs]: Add python-pytest.

Change-Id: Ice4bc5eb2dcaae92c44466ea1eb932544a502927
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher fb33458ca7
gnu: python-rad: Update to 0.19.0.
* gnu/packages/astronomy.scm (python-rad): Update to 0.19.0.

Change-Id: Iddfd637a764545b48f7a39506a2ef97d12501223
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher 8d043433cd
gnu: python-roman-datamodels: Update to 0.19.0.
* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.19.0.

Change-Id: Ib9d2164956715b47228f5659f9b930e93fdbdc01
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher 4f97a342c1
gnu: python-pysynphot: Improve package style.
* gnu/packages/astronomy.scm (python-pysynphot): Fix indention of the
package.

Change-Id: I0cb6d29a0c5184ff4701e227ec98513c8813af2b
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher a3fbf30fe3
gnu: python-pysynphot: Update to 2.0.0-0.54e9e2a.
* gnu/packages/astronomy.scm (python-pysynphot): Update to
2.0.0-0.54e9e2a.
[source]: Swap to git checkout as release is dated.
[arguments] <#:phases>: Add 'set-version phase.

Change-Id: Ibb51304cf15f191c731727344d413e2c2fd1a5ee
2024-02-27 22:51:58 +00:00
Sharlatan Hellseher 85da701988
gnu: python-jwst: Update to 1.13.4.
* gnu/packages/astronomy.scm (python-jwst): Update to 1.13.4.

Change-Id: Ib076eb063b316be391efbb47b4e9c8b080e78e27
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher 6827bb02de
gnu: python-h5netcdf: Update to 1.3.0.
* gnu/packages/python-xyz.scm (python-h5netcdf): Update to 1.3.0.

Change-Id: I6652b0d7d185b4475fb574b236534bba38a2cf07
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher 139bc18219
gnu: python-crds: Update to 11.17.16.
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.16.

Change-Id: Ib6f193f94c727c1280eadc15dfcc4c227e6c2a3e
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher 9bdb24b74e
gnu: python-asdf-wcs-schemas: Update to 0.3.0.
* gnu/packages/astronomy.scm (python-asdf-wcs-schemas): Update to 0.3.0.
[propagated-inputs]: Remove python-asdf; add python-asdf-standard,
python-asdf-transform-schemas, and python-asdf-unit-schemas.
[native-inputs]: Add python-asdf and python-pytest-openfiles.

Change-Id: Iea9e49d7cd94d579c417d801aaff7a1c508c96b8
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher 6240b80a32
gnu: python-asdf-transform-schemas: Update to 0.4.0.
* gnu/packages/astronomy.scm (python-asdf-transform-schemas): Update to 0.4.0.

Change-Id: I44fc1564879ac5bb10c8d4411d745410782fb8ff
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher fa0f9dc0e1
gnu: python-asdf-time-schemas: Update to 0.0.1-3.a306206.
* gnu/packages/astronomy.scm (python-asdf-time-schemas): Update to
0.0.1-3.a306206.

Change-Id: Id6459275f6c1bf43fa618b986f4fe9f87adc0e9f
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher a3f14db62c
gnu: python-asdf-fits-schemas: Update to 0.0.1-1.d1b5e7a.
* gnu/packages/astronomy.scm (python-asdf-fits-schemas): Update to
0.0.1-1.d1b5e7a.

Change-Id: I4448544c1111c96ec178a32222b846a66a906149
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher 6b07d8a916
gnu: python-asdf-2.15: Deprecate package.
Version 2.15.0 is no longer built with the python-astropy v6.0.0,
fail over to the latest version.

* gnu/package/astronomy.scm (python-asdf-2.15): Remove variable.
* gnu/package/astronomy.scm (python-asdf): Fail over to python-asdf-3.0.

Change-Id: I30b97c42f672571783f900825098af12c773ac87
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher 38b6670c7a
gnu: python-astropy: Improve packages style.
* gnu/packages/astronomy.scm (python-astropy): Adjust package style.
[arguments] <#:phases>: Simplify 'preparations, move step setting up
HOME env to 'prepare-test-environment phase.
Add 'prepare-test-environment phase, consolidating all pre test
procedures.
{check}: Add option to run test in parallel to accelerate them. Remove
from disabled list tests which were passed successfully.

Change-Id: I306ab60b6e155c81035de9584fbd9d06a6381045
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher e8c1c87c34
gnu: python-astropy: Update to 6.0.0.
* gnu/packages/astronomy.scm (python-astropy): Update to 6.0.0.
[arguments] <#:phases>: Adjust 'preparations phase to be compatible with
the new code layout. In 'check phase, silent one more failing test.
[propagated-inputs]: Add python-astropy-iers-data.
[native-inputs]: Remove python-cython; add python-cython-3,
python-matplotlib and python-pytest-mpl.

Change-Id: Id48a7cf05c30c1a1f7799fdc162b910316743f7c
2024-02-27 22:51:57 +00:00
Sharlatan Hellseher bf2633a065
gnu: Add python-astropy-iers-data.
* gnu/packages/astronomy.scm (python-astropy-iers-data): New variable.

Change-Id: Idd2e099013a4c6a6a28fc3dc8aa656bb58b3d697
2024-02-27 22:51:56 +00:00
Sharlatan Hellseher 7d92083027
gnu: python-aioftp: Update to 0.22.3.
* gnu/packages/python-web.scm (python-aioftp): Update to 0.22.3.
[build-system]: Swap to pyproject-build-system, there is no setup.py in
new release.
[arguments] <#:phases>: Use standard 'check phase.

Change-Id: I8e6a145da86e5ed56eb184d98d54bc8093a3bd1f
2024-02-27 22:51:56 +00:00