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Author SHA1 Message Date
Ricardo Wurmus 79d51ffeca
gnu: r-beachmat: Update to 2.6.4. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus a1357422c3
gnu: r-rhdf5lib: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus f7947f8991
gnu: r-hdf5array: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 18ebacaa1c
gnu: r-preprocesscore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus da109ae738
gnu: r-chemminer: Update to 3.42.1. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 6f37c3ea40
gnu: r-gdsfmt: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 9470f901d9
gnu: r-cytolib: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 691178d67b
gnu: r-multidataset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 6d0709231f
gnu: r-clusterprofiler: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus ebf9ad7984
gnu: r-enrichplot: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 669ea5ab09
gnu: r-matrixgenerics: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 61609fb88e
gnu: r-diffbind: Update to 3.0.13. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13.
 2021-02-11 21:33:36 +01:00
Leo Famulari a18492118c
gnu: OpenLDAP: Update to 2.4.57 [security fixes]. 
Fixes CVE-2020-{36221,36222,36223,36224,36225,36226,36226,36228,36229,36230}.

* gnu/packages/openldap.scm (openldap-2.4.57): New variable.
(openldap)[replacement]: New field.
 2021-02-11 15:02:53 -05:00
Nicolas Goaziou 7f891056d4
gnu: Add wob. 
* gnu/packages/xdisorg.scm (wob): New variable.
 2021-02-11 20:54:04 +01:00
Nicolas Goaziou cf95ef7f44
gnu: Add gammastep. 
* gnu/packages/xdisorg.scm (gammastep): New variable.
 2021-02-11 20:50:39 +01:00
Julien Lepiller c5dc87fee8
gnu: Add font-cozette. 
* gnu/packages/fonts.scm (font-cozette): New variable.
 2021-02-11 17:51:50 +01:00
Julien Lepiller 7cabeb80d4
gnu: Add python-crayons. 
* gnu/packages/python-xyz.scm (python-crayons): New variable.
 2021-02-11 17:50:16 +01:00
Nicolas Goaziou 3ff9779e83
gnu: grammalecte: Update to 2.1.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 2.1.0.
 2021-02-11 16:14:39 +01:00
Efraim Flashner ab5fa99ab4
gnu: python-dropbox: Update to 11.2.0. 
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.2.0.
 2021-02-11 16:29:47 +02:00
Efraim Flashner e81457aaa6
gnu: dbxfs: Update to 1.0.51. 
* gnu/packages/file-systems.scm (dbxfs): Update to 1.0.51.
 2021-02-11 16:28:37 +02:00
Nicolas Goaziou c207a8ac49
gnu: texmacs: Update to 1.99.18. 
* gnu/packages/text-editors.scm (texmacs): Update to 1.99.18.
 2021-02-11 15:15:23 +01:00
Nicolas Goaziou 8738c65b85
gnu: lyx: Update to 2.3.6.1. 
* gnu/packages/tex.scm (lyx): Update to 2.3.6.1.
 2021-02-11 15:11:57 +01:00
Nicolas Goaziou 8542d6292b
gnu: python-duniterpy: Update to 0.61.0. 
* gnu/packages/finance.scm (python-duniterpy): Update to 0.61.0.
 2021-02-11 14:50:04 +01:00
Nicolas Goaziou 08dae88f55
gnu: musescore: Update to 3.6.2. 
* gnu/packages/music.scm (musescore): Update to 3.6.2.
 2021-02-11 14:32:46 +01:00
Nicolas Goaziou cf92f22be8
gnu: emacs-ebdb: Update to 0.6.22. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.6.22.
 2021-02-11 14:27:07 +01:00
Ryan Prior 91989591bc
gnu: visidata: Update to 2.2.1. 
* gnu/packages/visidata.scm (visidata): Update to 2.2.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 19:55:38 +08:00
Ryan Prior ecbcbd5359
gnu: esbuild: Update to 0.8.43. 
* gnu/packages/web.scm (esbuild): Update to 0.8.43.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-02-11 13:17:08 +02:00
Pierre Neidhardt 1b62e3ab42
gnu: emacs-ztree: Update to 20210210. 
* gnu/packages/emacs-xyz.scm (emacs-ztree): Update to 20210210.
 2021-02-11 12:01:53 +01:00
Stefan Reichör 91689b9e08
gnu: Add tiramisu. 
* gnu/packages/gnome-xyz.scm (tiramisu): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 18:15:26 +08:00
Efraim Flashner f72ff06ef8
gnu: dropbear: Unbundle libraries. 
* gnu/packages/ssh.scm (dropbear)[source]: Add snippet to remove
libtommath, libtomcrypt.
[arguments]: Add configure-flag to not use bundled libraries.
[inputs]: Add libtomcrypt, libtommath.
 2021-02-11 12:04:37 +02:00
Efraim Flashner c9c68344ba
gnu: libtomcrypt: Patch pkg-config file to pull libtommath. 
* gnu/packages/multiprecision.scm (libtomcrypt)[arguments]: Adjust
'prepare-build phase to patch libtomcrypt.pc to link tommath.
 2021-02-11 12:04:37 +02:00
Lars-Dominik Braun a643deac2d
environment: Allow starting from existing profile. 
* guix/scripts/environment.scm (%options): Add -p/--profile switch.
(show-help): Document new switch.
(guix-environment): Handle new 'profile switch.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:59:07 +08:00
Efraim Flashner 4b62be5ca4
gnu: Add libtomcrypt. 
* gnu/packages/multiprecision.scm (libtomcrypt): New variable.
 2021-02-11 11:33:15 +02:00
Léo Le Bouter 78bbf6c443
gnu: lz4: Disable parallel testing. 
* gnu/packages/compression.scm (lz4)[arguments]: Set "#:parallel-tests?"
keyword argument to "#f".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:25:08 +08:00
Léo Le Bouter 4767ab4bf6
gnu: miredo: Fix creation of .pid file. 
* gnu/packages/networking.scm (miredo)[arguments]: Add "--localstatedir=/var"
to #:configure-flags and add 'do-not-create-/run phase to #:phases to remove
code that tries to create a directory inside "@localstatedir@" during install.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:18:15 +08:00
John Doe 988ac06ce8
gnu: vim: Fix test_signals test. 
* gnu/packages/vim.scm (vim)[arguments]: Add "CFLAGS=-D_REENTRANT" to

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 17:12:17 +08:00
宋文武 e429325d37
services: Add 'xorg-server-service-type'. 
* gnu/services/xorg.scm (xorg-server-service-type): New service type.
(xorg-server-profile-service): New procedure.
 2021-02-11 17:01:43 +08:00
Léo Le Bouter af06582d6c
gnu: parted: Update to 3.4. 
* gnu/packages/disk.scm (parted): Update to 3.4.
[native-inputs]: Remove python-2 and add python-wrapper to fix tests.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 16:55:12 +08:00
Raghav Gururajan 1755498ca7
gnu: gajim-openpgp: Update to 1.3.9. 
* gnu/packages/messaging.scm (gajim-openpgp): Update to 1.3.9.
[propagated-inputs]: Add python-gpg.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 16:23:47 +08:00
Raghav Gururajan fb2107cd4a
gnu: gajim-omemo: Update to 2.7.13. 
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.7.13.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 16:23:17 +08:00
Raghav Gururajan e5d726fefa
gnu: gajim: Fix credentials management. 
* gnu/packages/messaging.scm (gajim)[inputs]: Remove gnome-keyring.
Add libsecret.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 16:22:53 +08:00
Raghav Gururajan be450b19ce
gnu: gajim: Update to 1.3.0. 
* gnu/packages/messaging.scm (gajim): Update to 1.3.0.
[arguments]<#:phases>['disable-failing-tests]: New phase.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 16:21:14 +08:00
Raghav Gururajan 0da9dd4ca9
gnu: python-nbxmpp: Support GSSAPI authentication. 
* gnu/packages/messaging.scm (python-nbxmpp)[inputs]: Add python-gssapi.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 16:18:18 +08:00
Raghav Gururajan fdf4a6a8a7
gnu: python-nbxmpp: Update to 2.0.1. 
* gnu/packages/messaging.scm (python-nbxmpp): Update to 2.0.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 16:17:44 +08:00
宋文武 c7296465cf
gnu: hedgewars: Fix build. 
Fixes <https://issues.guix.gnu.org/46398>.

* gnu/packages/games.scm (hedgewars)[arguments]<#:phases>: Add the missing
"#include <QPainterPath>".
 2021-02-11 11:56:09 +08:00
Yuriy Glukhov 6fbefd03f0
gnu: nim: Update to 1.4.2. 
* gnu/packages/nim.scm (nim): Update to 1.4.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 11:30:49 +08:00
Léo Le Bouter b01d82a7f6
gnu: procps: Update provided programs list in description. 
* gnu/packages/linux.scm (procps)[description]: Update provided programs list.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 11:21:09 +08:00
Alexey Abramov 408f0b4c4d
services: knot: Fix configuration verification. 
* gnu/services/dns.scm (verify-knot-key-configuration): Fix the
order of memq arguments.
(verify-knot-keystore-configuration): Likewise.
(verify-knot-acl-configuration): Replace fold with every procedure.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 11:11:39 +08:00
Tanguy Le Carrour 07143d9fe1
gnu: python-pkginfo: Enable tests. 
* gnu/packages/python-xyz.scm (python-pkginfo)[arguments]: Don't disable tests.
Disable a failing test.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 11:05:40 +08:00
Tanguy Le Carrour bdb3263c14
gnu: python-pkginfo: Update to 1.7.0. 
* gnu/packages/python-xyz.scm (python-pkginfo): Udpate to 1.7.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-11 11:04:38 +08:00