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80729 commits

Author SHA1 Message Date
Ludovic Courtès
ebb8e44a4a
gnu: bioperl-minimal: Avoid top-level cross-module references.
This could lead to circular reference breakage.

* gnu/packages/bioinformatics.scm (bioperl-minimal): Move top-level
references to perl-* variables and their transitive inputs to
'arguments' and 'inputs'.
2021-07-01 17:13:13 +02:00
Ludovic Courtès
b17ee44212
gnu: Do not import (gnu packages commencement).
Line introduced in 4efbf56e53.

* gnu/packages/bioinformatics.scm: Remove unused (gnu packages
commencement) import.
2021-07-01 17:13:13 +02:00
Ricardo Wurmus
26117c6046
gnu: Add r-mcmcpack.
* gnu/packages/cran.scm (r-mcmcpack): New variable.

Co-authored-by: Marcel Schilling <marcel.schilling@uni-luebeck.de>
2021-07-01 16:05:25 +02:00
Marcel Schilling
7e2e14b866
gnu: r-seurat: Update to 4.0.3.
* gnu/packages/cran.scm (r-seuratobject): Update to 4.0.2.
(r-seurat): Update to 4.0.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-01 16:37:33 +03:00
Andrew Tropin
c6171420bf
gnu: obs: Update to 27.0.1
* gnu/packages/video.scm (obs): Update to 27.0.1.
[inputs]: Add glib, pipewire, wayland, wayland-protocol.

Some plugins now comes as submodules, so recursive? added.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-01 16:19:18 +03:00
Efraim Flashner
87cd6f9a12
gnu: vim-guix-vim: Update to 0.2.1.
* gnu/packages/vim.scm (vim-guix-vim): Update to 0.2.1.
2021-07-01 14:53:09 +03:00
Andrew Tropin
4920d4965e
gnu: emacs-pdf-tools: Update to new repo and revision.
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update.
[source]: Change URL to for.  See
<https://github.com/politza/pdf-tools/issues/659>.

This update is required to make pdf-tools work properly for HiDPI screens.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-01 10:33:13 +02:00
Nicolas Goaziou
94821e11d1
gnu: emacs-window-purpose: Update to 1.8.1.
* gnu/packages/emacs-xyz.scm (emacs-window-purpose): Update to 1.8.1.
2021-07-01 10:10:09 +02:00
cage
3ae519affd
gnu: tinmop: Update to 0.8.3.
* gnu/packages/web-browsers.scm (tinmop): Update to 0.8.3.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-01 10:06:23 +02:00
cage
66bce3f2a7
gnu: sbcl-croatoan: Update to 0.0.1-3.a577951.
* gnu/packages/lisp-xyz.scm (sbcl-croatoan): Update to 0.0.1-3.a577951.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-01 10:03:59 +02:00
cage
a3395a64e1
gnu: sbcl-tooter: Update to 1.0.0-2.b1639d8.
* gnu/packages/lisp-xyz.scm (sbcl-tooter): Update to 1.0.0-2.b1639d8.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-01 09:59:21 +02:00
Tobias Geerinckx-Rice
460392d1f0
gnu: Add squashfs-tools-ng.
* gnu/packages/compression.scm (squashfs-tools-ng): New public variable.
2021-07-01 04:27:17 +02:00
Tobias Geerinckx-Rice
a7e0266c9b
gnu: squashfs-tools: Update description.
* gnu/packages/compression.scm (squashfs-tools)[description]:
Don't mention zlib; compact discs; youth.
2021-07-01 04:27:12 +02:00
Tobias Geerinckx-Rice
8339c70b96
gnu: squashfs-tools: Update to 4.4-git.1.
* gnu/packages/compression.scm (squashfs-tools): Update to 4.4-git.1.
[source]: Remove obsolete snippet.
2021-07-01 03:39:44 +02:00
Tobias Geerinckx-Rice
e02faf3d82
gnu: gtkwave: Update to 3.3.110.
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.110.
2021-07-01 03:25:02 +02:00
Tobias Geerinckx-Rice
12b31ab3b3
gnu: remmina: Update to 1.4.19.
* gnu/packages/vnc.scm (remmina): Update to 1.4.19.
2021-07-01 03:25:01 +02:00
Tobias Geerinckx-Rice
f2a8b7e09c
gnu: libesmtp: Expand description.
* gnu/packages/mail.scm (libesmtp)[description]: Add more libESMTP facts.
2021-06-30 21:34:29 +02:00
Tobias Geerinckx-Rice
4f77288569
gnu: libesmtp: Update to 1.1.0.
* gnu/packages/mail.scm (libesmtp): Update to 1.1.0.
[native-inputs]: Remove them all again.
2021-06-30 21:34:29 +02:00
Tobias Geerinckx-Rice
9636591edf
gnu: libesmtp: Build from Git sources.
* gnu/packages/mail.scm (libesmtp)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[native-inputs]: Add autoconf, automake, and libtool.
2021-06-30 21:34:29 +02:00
Tobias Geerinckx-Rice
5434f6f893
gnu: verilator: Update to 4.204.
* gnu/packages/fpga.scm (verilator): Update to 4.204.
2021-06-30 21:34:28 +02:00
Tobias Geerinckx-Rice
71cd265419
gnu: benchmark: Update to 1.5.5.
* gnu/packages/benchmark.scm (benchmark): Update to 1.5.5.
2021-06-30 21:34:28 +02:00
Tobias Geerinckx-Rice
73e732fd21
gnu: ghostwriter: Update to 2.0.2.
* gnu/packages/text-editors.scm (ghostwriter): Update to 2.0.2.
2021-06-30 21:34:28 +02:00
Tobias Geerinckx-Rice
5b446c4486
gnu: cbonsai: Update to 1.2.1.
* gnu/packages/toys.scm (cbonsai): Update to 1.2.1.
2021-06-30 21:34:28 +02:00
Tobias Geerinckx-Rice
f85ca243c1
gnu: goaccess: Update to 1.5.1.
* gnu/packages/web.scm (goaccess): Update to 1.5.1.
2021-06-30 21:34:28 +02:00
Tobias Geerinckx-Rice
3e29bf169f
gnu: virtuoso-ose: Update to 7.2.6.
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.6.
[source]: Get it from SourceForge.
[inputs]: Use the default OpenSSL version.
2021-06-30 21:34:28 +02:00
Tobias Geerinckx-Rice
7857c54408
gnu: duplicity: Update to 0.8.20.
* gnu/packages/backup.scm (duplicity): Update to 0.8.20.
2021-06-30 21:34:27 +02:00
Tobias Geerinckx-Rice
e2d230c7b2
gnu: epson-inkjet-printer-escpr: Update to 1.7.12.
* gnu/packages/cups.scm (epson-inkjet-printer-escpr): Update to 1.7.12.
2021-06-30 21:34:27 +02:00
Tobias Geerinckx-Rice
2091202e0f
gnu: Add corefreq.
* gnu/packages/linux.scm (corefreq): New public variable.
2021-06-30 21:34:27 +02:00
Tobias Geerinckx-Rice
49dc5bb7d2
gnu: libpcap: Omit static library.
* gnu/packages/admin.scm (libpcap)[arguments]: Add a new 'omit-static-library phase.
2021-06-30 21:34:27 +02:00
Tobias Geerinckx-Rice
3e908bb509
gnu: libpcap: Update to 1.10.1.
* gnu/packages/admin.scm (libpcap): Update to 1.10.1.
2021-06-30 21:34:27 +02:00
Tobias Geerinckx-Rice
2db86250a7
gnu: i7z: Restrict to x86_64 systems.
* gnu/packages/hardware.scm (i7z)[supported-systems]:
Set to x86_64-linux.
2021-06-30 21:34:27 +02:00
Tobias Geerinckx-Rice
6f13881f1e
installer: Offer the CUPS printing service.
* gnu/installer/services.scm (%system-services): Add CUPS.
* gnu/installer/newt/services.scm (run-other-services-cbt-page):
New procedure.
(run-services-page): Call it last.
2021-06-30 21:34:26 +02:00
Tobias Geerinckx-Rice
14298cd301
gnu: vmpk: Update to 0.8.4.
* gnu/packages/music.scm (vmpk): Update to 0.8.4.
2021-06-30 21:34:26 +02:00
Tobias Geerinckx-Rice
7b5d05d282
gnu: drumstick: Update to 2.3.0.
* gnu/packages/music.scm (drumstick): Update to 2.3.0.
2021-06-30 21:34:26 +02:00
Hartmut Goebel
364db4fdf6
doc: Add a note and warning regarding the usage of deb packs.
* doc/guix.texi (Invoking guix pack): Move to the end of the table, and add a
note and warning regarding the usage of deb packs.
2021-06-30 14:43:36 -04:00
Efraim Flashner
b7d70aeb0b
gnu: tor: Update to 0.4.6.6.
* gnu/packages/tor.scm (tor): Update to 0.4.6.6.
[source]: Remove patch.
* gnu/packages/patches/tor-fix-build-with-gcc-7.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-30 20:02:32 +03:00
Pierre Neidhardt
e8e1dd2439
gnu: sbcl: Update to 2.1.6.
* gnu/packages/lisp.scm (sbcl): Update to 2.1.6.
2021-06-30 18:42:00 +02:00
Pierre Neidhardt
f44b1f76a9
gnu: sbcl-static-vectors: Update to 1.8.9.
* gnu/packages/lisp-xyz.scm (sbcl-static-vectors): Update to 1.8.9.
2021-06-30 18:41:55 +02:00
Pierre Neidhardt
005730ea50
gnu: sbcl-cffi: Update to 0.24.1.
* gnu/packages/lisp-xyz.scm (sbcl-cffi): Update to 0.24.1.
2021-06-30 18:41:49 +02:00
Florian Pelz
20dfda3d9e
news: Add 'de' translation.
* etc/news.scm: Add German translation of 'guix pack --format=deb' entry.
2021-06-30 16:02:29 +02:00
Kei Kebreau
6f5b264868
.guix-authorizations: Remove kkebreau.
* .guix-authorizations: Remove kkebreau from the committers.
2021-06-30 09:41:26 -04:00
Maxime Devos
5532371a3a
lint: Verify if #:tests? is respected in the 'check' phase.
There have been a few patches to the mailing list lately
not respecting this, and this linter detects 630 package
definitions that could be modified to support the --without-tests
package transformation.

* guix/lint.scm
  (check-optional-tests): New linter.
  (%local-checkers)[optional-tests]: Add it.
* tests/lint.scm
  (package-with-phase-changes): New procedure.
  ("optional-tests: no check phase")
  ("optional-tests: check hase respects #:tests?")
  ("optional-tests: check phase ignores #:tests?")
  ("optional-tests: do not crash when #:phases is invalid")
  ("optional-tests: allow G-exps (no warning)")
  ("optional-tests: allow G-exps (warning)")
  ("optional-tests: complicated 'check' phase")
  ("optional-tests: 'check' phase is not first phase"): New tests.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-30 13:53:00 +02:00
Maxime Devos
d9e0ae07db
guix: gexp: Define gexp->approximate-sexp.
It will be used in the 'optional-tests' linter.

* guix/gexp.scm (gexp->approximate-sexp): New procedure.
* tests/gexp.scm
  ("no references", "unquoted gexp", "unquoted gexp (native)")
  ("spliced gexp", "unspliced gexp, approximated")
  ("unquoted gexp, approximated"): Test it.
* doc/gexp.scm ("G-Expressions"): Document it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-30 13:53:00 +02:00
Pierre Neidhardt
ebf07a06f0
gnu: nyxt: Update to 2.1.1.
* gnu/packages/web-browsers.scm (nyxt): Update to 2.1.1.
2021-06-30 12:55:47 +02:00
Lars-Dominik Braun
33b54ef2a5
gnu: python-k5test: Apply unreleased upstream fix.
* gnu/packages/python-xyz.scm (python-k5test) [arguments]<#:phases>:
Rename phase to reflect what it actually does, add another substitute*
expression.
2021-06-30 10:18:51 +02:00
Danial Behzadi
387b66b643
gnu: Add tractor.
* gnu/packages/tor.scm (tractor): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-30 09:56:30 +02:00
Xinglu Chen
1fef9a4427
gnu: notmuch: Update to 0.32.2.
* gnu/packages/mail.scm (notmuch): Update to 0.32.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-30 09:51:30 +02:00
cage
e3ba4e97b0
gnu: telescope: Update to 0.3.
* gnu/packages/web-browsers.scm (telescope): Update to 0.3.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-30 09:48:52 +02:00
Nicolas Goaziou
8269d82868
gnu: emacs-rime: Update to 1.0.5.
* gnu/packages/emacs-xyz.scm (emacs-rime): Update to 1.0.5.
2021-06-30 00:35:56 +02:00
Nicolas Goaziou
d0aadf86ef
gnu: emacs-ebdb: Update to 0.6.24.
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.6.24.
2021-06-30 00:12:50 +02:00