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Author SHA1 Message Date
zimoun 5ac55aea8b
gnu: r-biocstyle: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here...
* gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
 2021-03-15 14:03:21 +01:00
zimoun 134404b437
gnu: r-biocviews: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here...
* gnu/packages/bioconductor.scm (r-biocviews): ...to here.
 2021-03-15 14:03:18 +01:00
Ricardo Wurmus 53dff6ac8f
gnu: r-rsqlite: Update to 2.2.4. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.4.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus 2e2cc58681
gnu: r-rcpparmadillo: Update to 0.10.2.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.2.0.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus 2fc2983e59
gnu: r-formatr: Update to 1.8. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.8.
[native-inputs]: Add r-knitr.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus fe903cb89d
gnu: r-survival: Update to 3.2-9. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-9.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus bbc542b53c
gnu: r-textshaping: Update to 0.3.2. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.2.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus ea23f17ece
gnu: r-mlr3tuning: Update to 0.8.0. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.8.0.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus 921ecdba7c
gnu: r-bbotk: Update to 0.3.1. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.1.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus ee92bb9004
gnu: r-workflows: Update to 0.2.2. 
* gnu/packages/cran.scm (r-workflows): Update to 0.2.2.
[propagated-inputs]: Add r-vctrs.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus e4d4046999
gnu: r-spatstat: Update to 2.0-1. 
* gnu/packages/cran.scm (r-spatstat): Update to 2.0-1.
[propagated-inputs]: Remove r-abind, r-deldir, r-goftest, r-matrix, r-mgcv,
r-nlme, r-polyclip, r-rpart, and r-tensor; add r-spatstat-core,
r-spatstat-geom, and r-spatstat-linnet.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus b0036b407c
gnu: r-brms: Update to 2.15.0. 
* gnu/packages/cran.scm (r-brms): Update to 2.15.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 7bd5a64303
gnu: r-forecast: Update to 8.14. 
* gnu/packages/cran.scm (r-forecast): Update to 8.14.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 58a2c438d3
gnu: r-lavaan: Update to 0.6-8. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-8.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus dae999bc48
gnu: r-parallelly: Update to 1.24.0. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.24.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus ecd03401c6
gnu: r-effectsize: Update to 0.4.4. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.4.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus b5aa552e63
gnu: r-magick: Update to 2.7.0. 
* gnu/packages/cran.scm (r-magick): Update to 2.7.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus dfa052bbc9
gnu: r-blockfest: Update to 2.0. 
* gnu/packages/cran.scm (r-blockfest): Update to 2.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 796a2241e3
gnu: r-flextable: Update to 0.6.4. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.4.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 77e5a20c43
gnu: r-maptools: Update to 1.1-1. 
* gnu/packages/cran.scm (r-maptools): Update to 1.1-1.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 87d3f805b9
gnu: r-utf8: Update to 1.2.1. 
* gnu/packages/cran.scm (r-utf8): Update to 1.2.1.
[native-inputs]: Add r-knitr.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus d163c71e0a
gnu: r-xfun: Update to 0.22. 
* gnu/packages/cran.scm (r-xfun): Update to 0.22.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 70257ad2c0
gnu: r-ipred: Update to 0.9-11. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-11.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus bfa09fd922
gnu: r-lava: Update to 1.6.9. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.9.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 172da782db
gnu: r-rvest: Update to 1.0.0. 
* gnu/packages/cran.scm (r-rvest): Update to 1.0.0.
[propagated-inputs]: Add r-lifecycle, r-rlang, and r-tibble.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 7bdef3789d
gnu: r-zoo: Update to 1.8-9. 
* gnu/packages/cran.scm (r-zoo): Update to 1.8-9.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus e1240e22f5
gnu: Add r-spatstat-linnet. 
* gnu/packages/cran.scm (r-spatstat-linnet): New variable.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 3ebae705f9
gnu: Add r-spatstat-core. 
* gnu/packages/cran.scm (r-spatstat-core): New variable.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus ddfe3f77a9
gnu: Add r-spatstat-geom. 
* gnu/packages/cran.scm (r-spatstat-geom): New variable.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 78373e394d
gnu: Add r-spatstat-sparse. 
* gnu/packages/cran.scm (r-spatstat-sparse): New variable.
 2021-03-15 13:45:29 +01:00
Léo Le Bouter 1ed435bf39
gnu: python-sphobjinv: Fix build. 
* gnu/packages/sphinx.scm (python-sphobjinv):
[patches]: Remove.
[propagated-inputs]: Add (uncomment) python-certifi.
 2021-03-15 12:51:54 +01:00
Léo Le Bouter 3096428889
gnu: libcroco/fixed: Make private. 
* gnu/packages/gnome.scm (libcroco/fixed): Use define instead of
define-public.
 2021-03-15 12:22:18 +01:00
Léo Le Bouter 8a085c1780
gnu: cyrus-sasl/fixed: Make private. 
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): Use define instead of
define-public.
 2021-03-15 12:22:17 +01:00
Léo Le Bouter cddf0b8955
gnu: unzip/fixed: Make private. 
* gnu/packages/compression.scm (unzip/fixed): Use define instead of
define-public.
 2021-03-15 12:22:17 +01:00
Tanguy Le Carrour 3e83e99322
gnu: poetry: Update to 1.1.5. 
* gnu/packages/python-xyz.scm (poetry): Update to 1.1.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2021-03-15 11:19:37 +00:00
Tanguy Le Carrour 014fa5cc6b
gnu: python-poetry-core: Update to 1.0.2. 
* gnu/packages/python-build.scm (python-poetry-core): Update to 1.0.2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2021-03-15 11:19:35 +00:00
Ricardo Wurmus 3eeb7dbf04
gnu: r-gkmsvm: Move back to (gnu packages cran). 
* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here...
* gnu/packages/cran.scm (r-gkmsvm): ...to here.
 2021-03-15 12:15:18 +01:00
Ricardo Wurmus 1daedaa864
gnu: libusb-for-axoloti: Revert to 1.0.23. 
* gnu/packages/axoloti.scm (libusb-for-axoloti): Revert to 1.0.23, because the
patch does not apply to the latest version.
 2021-03-15 12:05:50 +01:00
Ricardo Wurmus 21bc326b9a
gnu: guile-opengl: Fix linking with libGL.so. 
* gnu/packages/gl.scm (guile-opengl)[arguments]: Fix reference to libGL.so.
 2021-03-15 11:57:56 +01:00
Ricardo Wurmus 6e0ed09e68
gnu: Add instrain. 
* gnu/packages/bioinformatics.scm (instrain): New variable.
 2021-03-15 11:43:20 +01:00
Ricardo Wurmus ad34eb222c
gnu: Add python-drep. 
* gnu/packages/bioinformatics.scm (python-drep): New variable.
 2021-03-15 11:43:20 +01:00
Ricardo Wurmus c20813bb08
gnu: Add python-lmfit. 
* gnu/packages/python-xyz.scm (python-lmfit): New variable.
 2021-03-15 11:43:20 +01:00
Ricardo Wurmus 0bd166253a
gnu: Add python-asteval. 
* gnu/packages/python-xyz.scm (python-asteval): New variable.
 2021-03-15 11:43:19 +01:00
Ricardo Wurmus 8b85aea49b
gnu: Add python-uncertainties. 
* gnu/packages/python-xyz.scm (python-uncertainties): New variable.
 2021-03-15 11:43:19 +01:00
Ricardo Wurmus 714a8faa04
gnu: guile-email-latest: Update to 0.2.2-1.ca0520a. 
* gnu/packages/guile-xyz.scm (guile-email-latest): Update to 0.2.2-1.ca0520a.
 2021-03-15 11:43:19 +01:00
Lars-Dominik Braun c3163fe6b4
gnu: Add r-textplot. 
* gnu/packages/cran.scm (r-textplot): New variable.
 2021-03-15 10:53:22 +01:00
Lars-Dominik Braun ca3913d1f8
gnu: Add r-btm. 
* gnu/packages/cran.scm (r-btm): New variable.
 2021-03-15 10:53:21 +01:00
Lars-Dominik Braun 20fb147c9a
gnu: Add r-eyelinker. 
* gnu/packages/cran.scm (r-eyelinker): New variable.
 2021-03-15 10:53:20 +01:00
Lars-Dominik Braun 32603dbba9
gnu: Add r-intervals. 
* gnu/packages/cran.scm (r-intervals): New variable.
 2021-03-15 10:53:19 +01:00
Lars-Dominik Braun 181e3c0128
gnu: Add r-rtweet. 
* gnu/packages/cran.scm (r-rtweet): New variable.
 2021-03-15 10:53:18 +01:00
Lars-Dominik Braun 83b6d7a33e
gnu: Add r-rworldmap. 
* gnu/packages/cran.scm (r-rworldmap): New variable.
 2021-03-15 10:53:16 +01:00
Lars-Dominik Braun 3095255b7b
gnu: Add r-tmaptools. 
* gnu/packages/cran.scm (r-tmaptools): New variable.
 2021-03-15 10:53:15 +01:00
Lars-Dominik Braun 82344f5936
gnu: Add r-stars. 
* gnu/packages/cran.scm (r-stars): New variable.
 2021-03-15 10:53:15 +01:00
Lars-Dominik Braun a1dd43e4cd
gnu: Add r-lwgeom. 
* gnu/packages/cran.scm (r-lwgeom): New variable.
 2021-03-15 10:53:14 +01:00
Lars-Dominik Braun 5ce5e49c10
gnu: Add r-packcircles. 
* gnu/packages/cran.scm (r-packcircles): New variable.
 2021-03-15 10:53:13 +01:00
Lars-Dominik Braun 5d719fe608
gnu: Add r-readtext. 
* gnu/packages/cran.scm (r-readtext): New variable.
 2021-03-15 10:53:12 +01:00
Lars-Dominik Braun 6f688733b5
gnu: Add r-antiword. 
* gnu/packages/cran.scm (r-antiword): New variable.
 2021-03-15 10:53:11 +01:00
Lars-Dominik Braun 275b7987c0
gnu: Add r-pdftools. 
* gnu/packages/cran.scm (r-pdftools): New variable.
 2021-03-15 10:53:10 +01:00
Lars-Dominik Braun 52c70fb66e
gnu: Add r-qpdf. 
Cannot add to (gnu packages pdf) due to circular module dependency.

* gnu/packages/cran.scm (r-qpdf): New variable.
 2021-03-15 10:53:10 +01:00
Lars-Dominik Braun 03af89bd9e
gnu: Add r-readods. 
* gnu/packages/cran.scm (r-readods): New variable.
 2021-03-15 10:53:09 +01:00
Lars-Dominik Braun cb360afd66
gnu: Add r-streamr 
* gnu/packages/cran.scm (r-streamr): New variable.
 2021-03-15 10:53:08 +01:00
Lars-Dominik Braun a64e355ea6
gnu: Add r-ndjson. 
* gnu/packages/cran.scm (r-ndjson): New variable.
 2021-03-15 10:53:07 +01:00
Lars-Dominik Braun ee4ba54271
gnu: gzstream: Add PIC flag. 
* gnu/packages/compression.scm (gzstream) [arguments]: Add phase 'use-pic.
 2021-03-15 10:53:04 +01:00
Lars-Dominik Braun e415003202
gnu: Add r-striprtf. 
* gnu/packages/cran.scm (r-striprtf): New variable.
 2021-03-15 10:53:03 +01:00
Lars-Dominik Braun 804fad34e8
gnu: Add r-textclean. 
* gnu/packages/cran.scm (r-textclean): New variable.
 2021-03-15 10:53:02 +01:00
Lars-Dominik Braun 584c868fbd
gnu: Add r-english. 
* gnu/packages/cran.scm (r-english): New variable.
 2021-03-15 10:53:01 +01:00
Lars-Dominik Braun c3a1373c15
gnu: Add r-lexicon. 
* gnu/packages/cran.scm (r-lexicon): New variable.
 2021-03-15 10:53:00 +01:00
Lars-Dominik Braun bc82567b0b
gnu: Add r-syuzhet. 
* gnu/packages/cran.scm (r-syuzhet): New variable.
 2021-03-15 10:52:59 +01:00
Lars-Dominik Braun d332c5c7f2
gnu: Add r-textshape. 
* gnu/packages/cran.scm (r-textshape): New variable.
 2021-03-15 10:52:58 +01:00
Lars-Dominik Braun ed48898931
gnu: Add r-dtt. 
* gnu/packages/algebra.scm (r-dtt): New variable.
 2021-03-15 10:52:57 +01:00
Lars-Dominik Braun 4bc1707dba
gnu: Add r-mgsub. 
* gnu/packages/cran.scm (r-mgsub): New variable.
 2021-03-15 10:52:56 +01:00
Lars-Dominik Braun ae807fdb37
gnu: Add r-qdapregex. 
* gnu/packages/cran.scm (r-qdapregex): New variable.
 2021-03-15 10:52:55 +01:00
Lars-Dominik Braun c4e826bbd2
gnu: Add r-esc. 
* gnu/packages/statistics.scm (r-esc): New variable.
 2021-03-15 10:52:52 +01:00
Mark H Weaver d059485257
gnu: unzip: Remove redundant and unused "unzip-symlink.patch". 
This is a followup to commit 31d289a475,
which added, but did not use, "unzip-symlink.patch", which is
redundant with the pre-existing "unzip-initialize-symlink-flag.patch".

* gnu/packages/patches/unzip-symlink.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-03-14 19:16:17 -04:00
Leo Famulari b082ea9406
gnu: OpenSSL: Refer to the version number in a more robust way. 
* gnu/packages/tls.scm (openssl)[arguments]: Replace use of VERSION with
(PACKAGE-VERSION THIS-PACKAGE).
(openssl/fixed): Adjust accordingly.
 2021-03-14 16:33:12 -04:00
Leo Famulari bb2427fa28
gnu: ImageMagick: Refer to the version number in a more robust way. 
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Replace use of VERSION
with (PACKAGE-VERSION THIS-PACKAGE).
(imagemagick/fixed): Adjust accordingly.
 2021-03-14 16:33:12 -04:00
Leo Famulari 43cbb05f4b
gnu: libtiff: Refer to the version number in a more robust way. 
* gnu/packages/image.scm (libtiff)[arguments]: Replace use of VERSION
with (PACKAGE-VERSION THIS-PACKAGE).
(libtiff/fixed): Adjust accordingly.
 2021-03-14 16:33:08 -04:00
Leo Prikler d4e29f3628
gnu: libhandy: Update to 1.2.0. 
* gnu/packages/gnome.scm (libhandy): Update to 1.2.0.
 2021-03-14 19:47:08 +01:00
Mathieu Othacehe cbfcbb79df
ci: Support packages with multiple channels. 
This is a follow-up of 61a1165340. For packages
provided by external channels, package-channels procedure will return at least
two channels. Take it into account.

* gnu/ci.scm (cuirass-jobs): Fix channels subset argument.
 2021-03-14 19:43:35 +01:00
Eric Bavier b76762a9b7
gnu: Update OnionShare to 2.3.1. 
* gnu/packages/tor.scm (onionshare-cli): New variable.
(onionshare): Inherit from onionshare-cli.
[arguments]: Add patch-tests and install-data phases.  Adjust check phase for
new tests.
[inputs]: Remove python-pycryptodome, python-nautilus, python-sip,
python-stem, and python-pyqt.  Add onionshare-cli, python-shiboken-2,
python-pyside-2, python-qrcode.
[description]: Use new upstream description.
 2021-03-14 13:24:22 -05:00
Eric Bavier 620206b680
gnu: python-eventlet: Add missing dependencies. 
* gnu/packages/python-xyz.scm (python-eventlet)[propagated-inputs]: Add
python-dnspython and python-monotonic.
 2021-03-14 13:24:22 -05:00
Eric Bavier 5a31eb7d35
gnu: Add python-flask-socketio. 
* gnu/packages/python-web.scm (python-flask-socketio): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier 078f3288e2
gnu: Add python-socketio. 
* gnu/packages/python-web.scm (python-socketio): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier 7164d2105a
gnu: Add python-engineio 
* gnu/packages/python-web.scm (python-engineio): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier af25357b7d
gnu: Add python-bidict. 
* gnu/packages/python-xyz.scm (python-bidict): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier 30f5381487
gnu: Add python-sortedcollections. 
* gnu/packages/python-xyz.scm (python-sortedcollections): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier 207aa62e6b
gnu: Add python-sphinx-autodoc-typehints. 
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier b15720182e
gnu: Add python-sphobjinv. 
* gnu/packages/sphinx.scm (python-sphobjinv): New variable.
 2021-03-14 13:24:21 -05:00
Nicolas Goaziou 2babf7d831
gnu: pdfarranger: Update to 1.7.1. 
* gnu/packages/pdf.scm (pdfarranger): Update to 1.7.1.
 2021-03-14 19:16:55 +01:00
Efraim Flashner e598556ee5
gnu: alacritty: Adjust to changes in the cargo-build-system. 
* gnu/packages/terminals.scm (alacritty)[arguments]: Add flag to not
install source.
 2021-03-14 19:52:44 +02:00
Efraim Flashner 21ead0fc5b
gnu: newsboat: Adjust to changes in cargo-build-system. 
* gnu/packages/syndication.scm (newsboat)[arguments]: Add flag to not
install source.
 2021-03-14 19:52:44 +02:00
Efraim Flashner 7af3daa757
gnu: librsvg-next: Adjust to changes in cargo-build-system. 
* gnu/packages/gnome.scm (librsvg-next)[arguments]: Add flag to not
install source.
 2021-03-14 19:52:44 +02:00
Mathieu Othacehe 61a1165340
ci: Add channel subset support. 
* gnu/ci.scm (cuirass-jobs): Add channel subset support.
 2021-03-14 18:19:41 +01:00
Jan (janneke) Nieuwenhuizen 7327295462
gnu: mes: Remove aarch64-linux from supported-systems. 
* gnu/packages/mes.scm (mes)[supported-systems]: Remove aarch64-linux.
Thinko: mes only builds on aarch64-linux using --system=armhf-linux.
 2021-03-14 17:32:01 +01:00
Jan (janneke) Nieuwenhuizen 7982adb40a
gnu: mescc-tools: Build for armhf-linux and aarch64-linux too. 
* gnu/packages/mes.scm (mescc-tools)[supported-systems]: New field, overriding
the v0.5.2 version.
 2021-03-14 16:49:49 +01:00
Jan (janneke) Nieuwenhuizen a9d537594d
bootstrap: mescc-tools-static: Base arguments on version 0.5.2. 
* gnu/packages/make-bootstrap.scm (%mescc-tools-static)[arguments]: Use
fixed package-arguments of mescc-tools-0.5.2.
 2021-03-14 16:43:46 +01:00
Jan (janneke) Nieuwenhuizen 1d684aedf8
gnu: mes: Update to 0.23. 
* gnu/packages/mes.scm (mes)[source]: Update to 0.23.
[supported-systems]: Add aarch64-linux, armhf-linux.
(mes-rb5)[version,source,supported-systems]: Revert to v0.22.
 2021-03-14 12:10:07 +01:00
Jan (janneke) Nieuwenhuizen ba485217b8
gnu: mes: Update to nyacc-1.00.2. 
* gnu/packages/mes.scm (mes)[propagated-inputs]: Use nyacc-1.00.2.
 2021-03-14 11:50:55 +01:00
Jan (janneke) Nieuwenhuizen 8b05461cab
gnu: Add nyacc-1.00.2. 
* gnu/packages/mes.scm (nyacc-1.00.2): New variable.
 2021-03-14 11:50:51 +01:00
Jan (janneke) Nieuwenhuizen 87a8eaf671
gnu: mescc-tools: Update to 0.7.0. 
* gnu/packages/mes.scm (mescc-tools)[source]: Update to 0.7.0.
[arguments]: Add patch-prefix phase to remove hardcoded "/usr/bin".
 2021-03-14 11:50:43 +01:00