Maxim Cournoyer
80fec17f39
gnu: docker: Patch the reference to the docker proxy.
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* gnu/packages/docker.scm (docker)[inputs]: Add docker-libnetwork-cmd-proxy.
* gnu/packages/docker.scm (docker)[phases]{patch-paths}: Patch proxy.go to
refer to the docker-proxy binary by its absolute path.
2019-05-05 21:21:02 -04:00
Maxim Cournoyer
a01d54f3bd
gnu: docker: Optimize substitution macros.
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This change halves the time needed to patch the paths.
* gnu/packages/docker.scm (docker)[phases]{patch-paths}: Allow passing
multiple SOURCE-TEXT, PACKAGE and RELATIVE-PATH tuples so that the rewrite
rules can be generated and processed by a single use of the SUBSTITUTE*
macro. Rename SUBSTITUTE-LOOKPATH to SUBSTITUTE-LOOKPATH* and
substitute-Command to SUBSTITUTE-COMMAND* to denote the change. Adapt the
uses of SUBSTITUTE-LOOKPATH* and SUBSTITUTE-COMMAND*.
2019-05-05 21:21:02 -04:00
Maxim Cournoyer
079f0eb3d2
gnu: docker: Make macros use a relative path as argument.
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* gnu/packages/docker.scm (docker)[phases]: Move implementation detail inside
the SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND macros definition, so that the
relative path argument can be given as a relative path.
2019-05-05 21:21:01 -04:00
Maxim Cournoyer
3f280d3950
gnu: docker: Harmonize LookPath regexes.
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* gnu/packages/docker.scm (docker)[phases]: In the patch-paths phase, update
the regexes used by SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND to match at the
start of the word, like it's done later.
2019-05-05 21:21:01 -04:00
Maxim Cournoyer
1b14e1bccd
gnu: docker: Cleanup extraneous comments.
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* gnu/packages/docker.scm (docker): Remove "parenthesis-balancing" comments.
2019-05-05 21:21:01 -04:00
Maxim Cournoyer
c627932639
gnu: docker: Fix indentation.
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* gnu/packages/docker.scm (docker): Fix indentation using Emacs.
2019-05-05 21:20:58 -04:00
Maxim Cournoyer
0b94911add
gnu: Add docker-libnetwork-cmd-proxy.
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* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): New variable.
2019-05-05 20:14:15 -04:00
Maxim Cournoyer
9c0244abbd
gnu: Add docker-libnetwork.
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* gnu/packages/docker.scm (docker-libnetwork): New private variable.
2019-05-05 20:14:15 -04:00
Maxim Cournoyer
626de0d13a
gnu: Add go-netlink.
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* gnu/packages/linux.scm (go-netlink): New variable.
2019-05-05 20:14:15 -04:00
Maxim Cournoyer
03981f9064
gnu: Add go-netns.
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* gnu/packages/networking.scm (go-netns): New variable.
2019-05-05 20:14:14 -04:00
Maxim Cournoyer
523533ed09
gnu: Add go-sctp.
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* gnu/packages/networking.scm (go-sctp): New variable.
2019-05-05 20:14:14 -04:00
Ricardo Wurmus
85c1d20fa6
gnu: r-chippeakanno: Update to 3.18.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0.
[propagated-inputs]: Add r-rtracklayer.
2019-05-06 00:14:59 +02:00
Ricardo Wurmus
c24adbbf07
gnu: r-arrmnormalization: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.24.0.
2019-05-06 00:14:59 +02:00
Ricardo Wurmus
c2bfb978bf
gnu: r-progeny: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.6.0.
2019-05-06 00:14:59 +02:00
Ricardo Wurmus
7d33d36c52
gnu: r-rbowtie2: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.6.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
02530c2821
gnu: r-zfpkm: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.6.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
67bc9255d5
gnu: r-webbioc: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.56.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
c881b9ef3a
gnu: r-widgettools: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
a6edf33533
gnu: r-wiggleplotr: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.8.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
07597c85d8
gnu: r-wrench: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.2.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
298f7f112f
gnu: r-xcms: Update to 3.6.0.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
7c888138ef
gnu: r-massspecwavelet: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.50.0.
2019-05-06 00:14:58 +02:00
Ricardo Wurmus
88469def75
gnu: r-xbseq: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.16.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
0334b203d7
gnu: r-roar: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-roar): Update to 1.20.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
7f4957b24e
gnu: r-yarn: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
2feea2d22a
gnu: r-quantro: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
f48e29daa3
gnu: r-yaqcaffy: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
38c5d13a73
gnu: r-simpleaffy: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
56576bea97
gnu: r-gcrma: Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
edba69b2ff
gnu: r-yapsa: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
Ricardo Wurmus
3cdc5d1a7b
gnu: r-somaticsignatures: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
128c6d59f0
gnu: r-gtrellis: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
1269a926c0
gnu: r-yamss: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
2a6d838337
gnu: r-ebimage: Update to 4.26.0.
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* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
b68a9e80f4
gnu: r-aucell: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
9da2021f49
gnu: r-allelicimbalance: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.22.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
ee1a45d719
gnu: r-annotationtools: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.58.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
69a2ec5447
gnu: r-annotationfuncs: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.34.0.
2019-05-06 00:14:56 +02:00
Ricardo Wurmus
e2e1dea2bb
gnu: r-abaenrichment: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.0.
2019-05-06 00:14:55 +02:00
Ricardo Wurmus
bab06a6ff3
gnu: r-gofuncr: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.4.0.
2019-05-06 00:14:55 +02:00
Ricardo Wurmus
bcc233c1a6
gnu: r-atacseqqc: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.0.
[propagated-inputs]: Add r-edger.
2019-05-06 00:14:55 +02:00
Ricardo Wurmus
19ee76379c
gnu: r-genomicscores: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.0.
2019-05-06 00:14:55 +02:00
Ricardo Wurmus
aa0ebfd2eb
gnu: r-motifstack: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.28.0.
[propagated-inputs]: Replace r-grimport with r-grimport2.
2019-05-06 00:14:55 +02:00
Ricardo Wurmus
f7a495b159
gnu: r-motiv: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-motiv): Update to 1.40.0.
2019-05-06 00:14:55 +02:00
Ricardo Wurmus
a5860ebe87
gnu: r-rgadem: Update to 2.31.0.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.31.0.
2019-05-06 00:14:54 +02:00
Ricardo Wurmus
e33c25ff2c
gnu: r-bacon: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bacon): Update to 1.12.0.
2019-05-06 00:14:54 +02:00
Ricardo Wurmus
b7ddf0f048
gnu: r-abseqr: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.2.0.
2019-05-06 00:14:54 +02:00
Ricardo Wurmus
1aadddeaa9
gnu: r-a4: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-a4): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
Ricardo Wurmus
ae1730ae1a
gnu: r-a4base: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-a4base): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
Ricardo Wurmus
e5a36543ac
gnu: r-a4reporting: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.32.0.
2019-05-06 00:14:54 +02:00