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Author SHA1 Message Date
Ricardo Wurmus c68914aa15
gnu: r-isoband: Update to 0.2.2. 
* gnu/packages/cran.scm (r-isoband): Update to 0.2.2.
[propagated-inputs]: Remove r-rcpp.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus ad85d0d536
gnu: r-zvcv: Update to 2.1.0. 
* gnu/packages/cran.scm (r-zvcv): Update to 2.1.0.
[propagated-inputs]: Remove r-partitions; add r-bh, r-dplyr, r-magrittr, and r-rlinsolve.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 22f8260ba1
gnu: r-umap: Update to 0.2.6.0. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.6.0.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 4a55cc48b8
gnu: r-ldheatmap: Update to 0.99-8. 
* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-8.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 0319196561
gnu: r-nonnest2: Update to 0.5-4. 
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-4.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 3995c50878
gnu: r-rcppgsl: Update to 0.3.8. 
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.8.
[native-inputs]: Remove r-knitr.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 2d916665ce
gnu: r-ggeffects: Update to 0.15.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.15.0.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 71017346ad
gnu: r-bayestestr: Update to 0.7.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.7.0.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 13141c667b
gnu: r-rstatix: Update to 0.6.0. 
* gnu/packages/cran.scm (r-rstatix): Update to 0.6.0.
[propagated-inputs]: Add r-generics.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 5ebef04041
gnu: r-radiant-data: Update to 1.3.9. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.9.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 096ecad744
gnu: r-tinytex: Update to 0.24. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.24.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus ebd0b2b221
gnu: r-xfun: Update to 0.15. 
* gnu/packages/cran.scm (r-xfun): Update to 0.15.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus a7c5df07af
gnu: r-calibrate: Update to 1.7.7. 
* gnu/packages/cran.scm (r-calibrate): Update to 1.7.7.
 2020-06-22 12:15:50 +02:00
Ricardo Wurmus 5195eeeb07
gnu: r-htmltable: Update to 2.0.0. 
* gnu/packages/cran.scm (r-htmltable): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 3841f83396
gnu: r-htmltools: Update to 0.5.0. 
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.0.
[propagated-inputs]: Remove r-rcpp; add r-base64enc.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus cac8cfbc46
gnu: r-v8: Update to 3.2.0. 
* gnu/packages/cran.scm (r-v8): Update to 3.2.0.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus ebcebc59ab
gnu: r-hdf5array: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus b07e53bb09
gnu: r-rhdf5: Update to 2.32.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus f65d5e84de
gnu: r-biomart: Update to 2.44.1. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 55401384dc
gnu: r-genomeinfodb: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus f7d5721bc2
gnu: r-gdsfmt: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 1893092d58
gnu: r-cicero: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1.
[propagated-inputs]: Add r-stringi.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus ef58875705
gnu: r-cytoml: Update to 2.0.5. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5.
[propagated-inputs]: Add r-xml2.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 015ff0bf18
gnu: r-wiggleplotr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 8c06ce3c22
gnu: r-regioner: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 48713c5d94
gnu: Add r-rlinsolve. 
* gnu/packages/cran.scm (r-rlinsolve): New variable.
 2020-06-22 12:15:49 +02:00
Mathieu Othacehe b7f211bbbc
gnu: cuirass: Update to 0.0.1-33-61cc56f6. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-33-61cc56f6.
 2020-06-22 10:39:24 +02:00
Mathieu Othacehe 10c582fa22
gnu: xl2tpd: Fix typo. 
* gnu/packages/vpn.scm (xl2tpd)[arguments]: Turn "-DPPD" into "-DPPPD".
 2020-06-22 10:28:00 +02:00
Ricardo Wurmus acba72b914
gnu: express: Update to 1.5.3. 
* gnu/packages/bioinformatics.scm (express): Update to 1.5.3.
[source]: Fetch from Github.
[arguments]: Add phase "remove-update-check".
 2020-06-22 09:07:51 +02:00
Tobias Geerinckx-Rice 0e0b5977b7
gnu: youtube-dl: Update to 2020.06.16. 
* gnu/packages/video.scm (youtube-dl): Update to 2020.06.16.
 2020-06-22 02:47:02 +02:00
Tobias Geerinckx-Rice 45ebb59a54
gnu: vmpk: Update home page. 
gnu/packages/music.scm (vmpk)[home-page]: Update TLD and use HTTPS.
 2020-06-22 02:47:02 +02:00
Jakub Kądziołka f8a28b6c6d
gnu: bison-3.6: Don't change the name of the package. 
This is a follow-up to commit 512d23c65d.

* gnu/packages/bison (bison-3.6)[name]: Remove the overridden value.
 2020-06-22 02:35:55 +02:00
Mark H Weaver 5a9a438146
gnu: linux-libre@4.14: Update to 4.14.185. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.185.
(linux-libre-4.14-pristine-source): Update hash.
 2020-06-21 19:13:29 -04:00
Mark H Weaver f1922ee156
gnu: linux-libre@4.9: Update to 4.9.228. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.228.
(linux-libre-4.9-pristine-source): Update hash.
 2020-06-21 19:13:01 -04:00
Mark H Weaver 8e5b17280c
gnu: linux-libre@4.4: Update to 4.4.228. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.228.
(linux-libre-4.4-pristine-source): Update hash.
 2020-06-21 19:12:04 -04:00
Peter Lo 1d97e871dd
gnu: Add r-boruta. 
* gnu/packages/statistics.scm (r-boruta): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-06-21 18:47:40 -04:00
Nicolas Goaziou 37ab7837e7
gnu: xmoto: Update to 0.6.1. 
* gnu/packages/games.scm (xmoto): Update to 0.6.1.
[arguments]: Remove phase installing man pages, now properly handled by the
installation script.
 2020-06-22 00:40:10 +02:00
Nicolas Goaziou 9546891f95
gnu: emacs-relint: Update to 1.18. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.18.
 2020-06-21 23:51:19 +02:00
Ludovic Courtès 89ab6bfbf1
gnu: guile: Add 3.0.3. 
* gnu/packages/guile.scm (guile-3.0.3): New variable.
 2020-06-21 23:37:29 +02:00
Nicolas Goaziou 6d7ed7c050
gnu: Add seahorse-adventures. 
* gnu/packages/games.scm (seahorse-adventures): New variable.
 2020-06-21 23:14:16 +02:00
Julien Lepiller 3f3c61b8d5
gnu: Add font-mplus-testflight. 
* gnu/packages/fonts.scm (font-mplus-testflight): New variable.
 2020-06-21 21:43:07 +02:00
Timotej Lazar dbadca9ac7
gnu: k3b: Update to 20.04.2. 
* gnu/packages/kde-multimedia.scm (k3b): Update to 20.04.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-21 17:36:41 +02:00
Timotej Lazar c9650cef1e
gnu: k3b: Note the runtime dependency on udisks-service. 
* gnu/packages/kde-multimedia.scm (k3b)[description]: Note that udisks-service
should be enabled.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-21 17:36:41 +02:00
Timotej Lazar 4aa89a0914
gnu: k3b: Add inputs for libraries loaded at runtime. 
Patch the source to load these from absolute paths. Actual loading is done by
the Qt library, so we cannot use k3b’s runpath.

* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add libcdio-paranoia and
libdvdcss.
[arguments]<#:phases>[set-absolute-library-paths]: New phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-21 17:36:41 +02:00
Timotej Lazar 7afaab8bef
gnu: k3b: Add inputs for external programs. 
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add cdrdao, dvd+rw-tools,
libburn and sox.
[arguments]<#:phases>[wrap-path]: New phase to wrap the binary with paths to
the above.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-21 17:36:40 +02:00
Timotej Lazar f458958543
gnu: Add cdrdao. 
* gnu/packages/cdrom.scm (cdrdao): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-21 17:36:40 +02:00
Ludovic Courtès e4a4287c5f
channels: 'authenticate-channel' doesn't check relation with intro commit. 
Fixes <https://bugs.gnu.org/41908>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.

The relation check imposed an extra restriction that was unnecessary:
it's enough to authenticate the set difference between the closure of
START-COMMIT and that of END-COMMIT.  Any attempt to jump to an
unrelated commit would lead to the authentication failure of one commit
on the way.

* guix/channels.scm (authenticate-channel): Remove extra
'commit-relation' check when (null? commits).
 2020-06-21 17:36:40 +02:00
Ludovic Courtès 41939c374a
git-authenticate: Ignore authenticated commit cache when it's not #o600. 
* guix/git-authenticate.scm (previously-authenticated-commits): Stat
PORT; return the empty list if it's no #o600 and change it to #o600.
 2020-06-21 17:36:39 +02:00
Leo Prikler bdafdfcec9
gnu: add convmv. 
* gnu/packages/convmv.scm: New file.
* gnu/local.mk: Add it to build.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2020-06-21 15:53:06 +02:00
Julien Lepiller 5dca64fc97
gnu: Add font-fontna-yasashisa-antique. 
gnu/packages/fonts.scm (font-fontna-yasashisa-antique): New variable.
 2020-06-21 15:50:16 +02:00