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zimoun b832fddbfc
gnu: r-impute: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-impute): Move from here...
* gnu/packages/bioconductor.scm (r-impute): ...to here.
 2021-05-31 15:34:45 +02:00
zimoun a2a1d86a77
gnu: r-samr: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-samr): Move from here...
* gnu/packages/bioconductor.scm (r-samr): ...to here.
 2021-05-31 15:34:45 +02:00
zimoun 4f030cc0db
gnu: r-msnbase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-msnbase): Move from here...
* gnu/packages/bioconductor.scm (r-msnbase): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun 8c7c78bfce
gnu: r-msnid: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-msnid): Move from here...
* gnu/packages/bioconductor.scm (r-msnid): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun 537d48d869
gnu: r-bsgenome: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun 90bbab5cff
gnu: r-topgo: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-topgo): Move from here...
* gnu/packages/bioconductor.scm (r-topgo): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun f78ff75b41
gnu: r-genomicfeatures: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfeatures): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun a88230a1bc
gnu: r-rtracklayer: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Move from here...
* gnu/packages/bioconductor.scm (r-rtracklayer): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun ca1a015777
gnu: r-genomicalignments: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Move from here...
* gnu/packages/bioconductor.scm (r-genomicalignments): ...to here.
 2021-05-31 15:34:39 +02:00
Efraim Flashner d2d1f8bfae
gnu: Add julia-prettytables. 
* gnu/packages/julia-xyz.scm (julia-prettytables): New variable.
 2021-05-31 12:54:49 +03:00
Efraim Flashner 9bb2e649a6
gnu: Add julia-formatting. 
* gnu/packages/julia-xyz.scm (julia-formatting): New variable.
 2021-05-31 12:54:49 +03:00
Efraim Flashner adedfd0773
gnu: Add julia-typedtables. 
* gnu/packages/julia-xyz.scm (julia-typedtables): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner f34f8a3d22
gnu: Add julia-weakrefstrings. 
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner 9f92c8b51f
gnu: Add julia-pooledarrays. 
* gnu/packages/julia-xyz.scm (julia-pooledarrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner 4541cda7d7
gnu: Add julia-indirectarrays. 
* gnu/packages/julia-xyz.scm (julia-indirectarrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner a33695945c
gnu: Add julia-rangearrays. 
* gnu/packages/julia-xyz.scm (julia-rangearrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner 2262f79917
gnu: Add julia-graphics. 
* gnu/packages/julia-xyz.scm (julia-graphics): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner ea03851b01
gnu: Add julia-mappedarrays. 
* gnu/packages/julia-xyz.scm (julia-mappedarrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner 6a2d36c734
gnu: Add julia-tensorcore. 
* gnu/packages/julia-xyz.scm (julia-tensorcore): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner 277fef2026
gnu: Add julia-quadmath. 
* gnu/packages/julia-xyz.scm (julia-quadmath): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner f273a4b799
gnu: Add julia-mocking. 
* gnu/packages/julia-xyz.scm (julia-mocking): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner 73b6f78c98
gnu: Add julia-exprtools. 
* gnu/packages/julia-xyz.scm (julia-exprtools): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner 2615a8bad5
gnu: Add julia-optimtestproblems. 
* gnu/packages/julia-xyz.scm (julia-optimtestproblems): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner fa945a540c
gnu: Add julia-matrixfactorizations. 
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner 6dd2634da4
gnu: Add julia-arraylayouts. 
* gnu/packages/julia-xyz.scm (julia-arraylayouts): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner f7f1efeaa7
gnu: Add julia-statsapi. 
* gnu/packages/julia-xyz.scm (julia-statsapi): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner 2bd2406cd9
gnu: Add julia-tables. 
* gnu/packages/julia-xyz.scm (julia-tables): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner db2bfcb90d
gnu: Add julia-missings. 
* gnu/packages/julia-xyz.scm (julia-missings): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner 209a80c109
gnu: Add julia-queryoperators. 
* gnu/packages/julia-xyz.scm (julia-queryoperators): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner a61e13f777
gnu: Add julia-tableshowutils. 
* gnu/packages/julia-xyz.scm (julia-tableshowutils): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner e886181bb6
gnu: Add julia-datavalues. 
* gnu/packages/julia-xyz.scm (julia-datavalues): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner 3f40ba72c6
gnu: Add julia-tabletraits. 
* gnu/packages/julia-xyz.scm (julia-tabletraits): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner 43f26eaeaa
gnu: Add julia-iteratorinterfaceextensions. 
* gnu/packages/julia-xyz.scm (julia-iteratorinterfaceextensions): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner 21df298ec9
gnu: Add julia-datavalueinterfaces. 
* gnu/packages/julia-xyz.scm (julia-datavalueinterfaces): New variable.
 2021-05-31 12:54:45 +03:00
Efraim Flashner ccbf9c450e
gnu: Add julia-dataapi. 
* gnu/packages/julia-xyz.scm (julia-dataapi): New variable.
 2021-05-31 12:54:45 +03:00
Hartmut Goebel c85edf2ca4
gnu: java-pep-adapter 2.1.23. 
* gnu/packages/pep.scm (java-pep-adapter): Update to 2.1.23.
  [source]: Switch to new git repo.
  [arguments]<make-flags>: Enable release-build, use new target names.
  [arguments]<phases>{fix-includes}: Remove phase.
  {pin-shared-lib-path}: Update file paths.
  {build-codegen}: New phase.
  {install}: Use "(install)".
  [native-inputs]: Add graphviz.
  [inputs]: Fix input util-linux.
 2021-05-31 10:45:54 +02:00
Hartmut Goebel 140087faa5
gnu: python-pep-adapter: Update to 2.1.3. 
* gnu/packages/pep.scm (python-pep-adapter): Update to 2.1.3.
  [source]: Switch to new git repo.
  [arguments]<phases>{remove-wheel-requirement}: New phase.
  [native-inputs]: Add python-pytest and python-pytest-forked.
  [inputs]: Remove asn1c, add python-setuptools-scm. util-linux.
 2021-05-31 10:45:53 +02:00
Hartmut Goebel c178f859b5
gnu: libpEpAdapter: Update to 2.1.21. 
* gnu/packages/pep.scm (libpEpAdapter): Update to 2.1.21.
  [source]: Swicht to new git repo.
  [arguments]<make-flags>: Enable release-build.
 2021-05-31 10:45:53 +02:00
Hartmut Goebel 85d80283b6
gnu: pep-engine: Update to 2.1.34. 
* gnu/packages/pep.scm (fdik-libetpan): Update to current development
  version. [source]: Switch to pep.foundation.
  (pep-engine): Update to 2.1.34. [source]: Switch to new git repo.
  [arguments]<make-flags>: Enable release-build.
  [inputs]: Use normal sequoia.
* gnu/packages/sequoia.scm (sequoia4pEp): Remove variable.
 2021-05-31 10:45:53 +02:00
Hartmut Goebel c7f023723c
gnu: yml2: Update to 2.7.0. 
* gnu/packages/pep.scm (yml2): Update to 2.7.0.
  [source]: Switch to new git repo.
 2021-05-31 10:45:53 +02:00
Roel Janssen 47f31c0afe
gnu: Add python-pyflow. 
* gnu/packages/python-science.scm (python-pyflow): New variable.
 2021-05-31 09:30:51 +02:00
Roel Janssen ad7c7b5bf6
gnu: Add python-google. 
* gnu/packages/python-web.scm (python-google): New variable.
 2021-05-31 09:21:45 +02:00
Efraim Flashner 221141ca70
gnu: gnuastro: Update to 0.15. 
* gnu/packages/astronomy.scm (gnuastro): Update to 0.15.
 2021-05-31 09:44:47 +03:00
Maxim Cournoyer b9ac7d9aaa
doc: Add a note about networking requirements for SSH access to VMs. 
Fixes <https://issues.guix.gnu.org/48739>.  It may seem silly, but when not
realizing this firsthand, it can be quite surprising and thus not obvious to
troubleshoot.  Thanks to Eric Brown for their insightful comments on the
tracker.

* doc/guix.texi (Running Guix in a VM): Add a note that networking support
must be available in the Guix System operating system declaration used for the
VM.
 2021-05-30 23:33:36 -04:00
Tobias Geerinckx-Rice 6086e6ed1a
gnu: r-benchmarkmedata: Fix typo in description. 
* gnu/packages/cran.scm (r-benchmarkmedata)[description]: Fix typo.
 2021-05-30 15:13:41 +02:00
Tobias Geerinckx-Rice d127fdd0e7
doc: Fix typos. 
* doc/contributing.texi (Translating Guix): Fix ‘runnig’ typo.  Replace
‘target’ with ‘command’ to match the verb.  Fix ‘refered’ and ‘formating’
too.
 2021-05-30 15:13:40 +02:00
Tobias Geerinckx-Rice 836f5fc4c5
gnu: zoxide: Fix typo in synopsis. 
* gnu/packages/rust-apps.scm (zoxide)[synopsis]: Fix typo.
 2021-05-30 15:13:40 +02:00
Tobias Geerinckx-Rice d342d06630
gnu: julia-plotutils: Fix typo in description. 
* gnu/packages/julia-xyz.scm (julia-plotutils)[description]: Fix typo.
 2021-05-30 15:13:40 +02:00
Tobias Geerinckx-Rice bf2a361643
gnu: cryptsetup: Rewrite synopsis & description. 
* gnu/packages/cryptsetup.scm (cryptsetup)[synopsis, description]:
Be more explicit about stuff.
 2021-05-30 15:13:40 +02:00
Tobias Geerinckx-Rice e9cbb97ac8
gnu: cryptsetup: Update to 2.3.6. 
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 2.3.6.
 2021-05-30 15:13:40 +02:00