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127442 Commits

Author SHA1 Message Date
Ricardo Wurmus c101519061
gnu: r-rastervis: Update to 0.51.6. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.51.6.

Change-Id: I7015583574faaf42cbe7df83dda7d05aaed4c475
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus c26dea6c49
gnu: r-collapsibletree: Update to 0.1.8. 
* gnu/packages/cran.scm (r-collapsibletree): Update to 0.1.8.

Change-Id: Ibdf0f7b190d231f73f1817bcebd0523852385cde
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus dcb989dea8
gnu: r-data-tree: Update to 1.1.0. 
* gnu/packages/cran.scm (r-data-tree): Update to 1.1.0.
[native-inputs]: Add r-rmarkdown.

Change-Id: Id29f4f08cf988d8699e61479a262dff07a630572
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus 9e32016c9e
gnu: r-fbasics: Update to 4032.96. 
* gnu/packages/cran.scm (r-fbasics): Update to 4032.96.

Change-Id: I1cbba3ad08a4f18618ad6e00b36c0e04ab67f0ae
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus 37b665b714
gnu: r-leaflet: Update to 2.2.1. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.2.1.

Change-Id: I150f958f68c13284d29394f2fb66ed7b0efb6c10
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus fa8e97c557
gnu: r-xfun: Update to 0.41. 
* gnu/packages/cran.scm (r-xfun): Update to 0.41.

Change-Id: I1836a13e924ba3af8a5977f54b1f85d7a4c9d4d5
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus e710d290f3
gnu: r-lava: Update to 1.7.3. 
* gnu/packages/cran.scm (r-lava): Update to 1.7.3.

Change-Id: I9f2f75685f8ef058b505e9c29c9a23d31b9a7a46
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 116bfb3cd0
gnu: r-rmumps: Update to 5.2.1-25. 
* gnu/packages/cran.scm (r-rmumps): Update to 5.2.1-25.

Change-Id: Id30606861beacd93a263fcaf33ef6beb73402463
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 60953d62c0
gnu: r-rgooglemaps: Update to 1.5.1. 
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.5.1.
[propagated-inputs]: Remove r-sp.

Change-Id: Ib2f5762ddfb998f7aaf2640807c005782b890d27
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus e3fe8eed8f
gnu: r-maps: Update to 3.4.1.1. 
* gnu/packages/cran.scm (r-maps): Update to 3.4.1.1.

Change-Id: I562ba446b9edcece65ec9078bd6d45949d0d82f1
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 76b34f7130
gnu: r-wesanderson: Update to 0.3.7. 
* gnu/packages/cran.scm (r-wesanderson): Update to 0.3.7.

Change-Id: I8df7f543eb82dc45da68ba5a3b116006a8463973
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 4f68d59d5c
gnu: r-htmltools: Update to 0.5.7. 
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.7.

Change-Id: I065ece3404d36b1a860ed141c4d6631779ea4c05
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus e47637b8df
gnu: r-httr2: Update to 1.0.0. 
* gnu/packages/cran.scm (r-httr2): Update to 1.0.0.
[propagated-inputs]: Add r-lifecycle and r-vctrs.

Change-Id: Ie52627aa382f59b6251953620ac1a38576f92a5d
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus a3341b68d4
gnu: r-ggpp: Update to 0.5.5. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.5.

Change-Id: Ifaff1e48d8fd7f166d8ae9f70bdd0cfc099de3ca
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 3b34ecaef9
gnu: r-waldo: Update to 0.5.2. 
* gnu/packages/cran.scm (r-waldo): Update to 0.5.2.

Change-Id: I1273af36bcd2b9223acb071db3703d2fa3827e61
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus d64662b6f9
gnu: r-collapse: Update to 2.0.6. 
* gnu/packages/cran.scm (r-collapse): Update to 2.0.6.

Change-Id: Id3522ad2adc4d50d1ce4eeb3406c1bdb7177bbfd
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 34a5f9adb9
gnu: r-afpt: Update to 1.1.0.4. 
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.4.

Change-Id: Ia4922ee208924a77cc2725a0d00e7d8a82f77c26
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 9b270ccefa
gnu: r-abn: Update to 3.0.3. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.3.

Change-Id: Id94ec47d805af9da63dbf43a9edbd5e7c3a5a62a
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus fefc250c60
gnu: r-activepathways: Update to 2.0.3. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.3.

Change-Id: I4199c307d48583c0894a39af78f6a4027cb0cf54
 2023-11-15 15:55:20 +01:00
Ricardo Wurmus 285dd08443
gnu: r-ggpicrust2: Update to 1.7.3. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.3.

Change-Id: I18ab123d640ceec9315a21dff48ed2f1ea4ddff5
 2023-11-15 15:55:20 +01:00
Andre A. Gomes 8eed542ddd
gnu: nyxt: Update to 3.9.2. 
* gnu/packages/web-browsers.scm (nyxt): Update to 3.9.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-11-15 15:17:04 +01:00
Andre A. Gomes 0d55b7b06e
gnu: cl-slime-swank: Update to 2.28-1.735258a. 
* gnu/packages/lisp-xyz.scm (sbcl-slime-swank): Update to 2.28-1.735258a.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I109d71f8184ec1b1a3f8ad30b11e57f4280ae916
 2023-11-15 15:17:04 +01:00
Andre A. Gomes e6a9b48877
gnu: emacs-slime: Update to 2.28-1.735258a. 
* gnu/packages/emacs-xyz.scm (emacs-slime): Update to 2.28-1.735258a.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-11-15 15:17:04 +01:00
Nicolas Goaziou 7dd3a3240b
gnu: emacs-flycheck-grammalecte: Add missing propagated input. 
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte)[propagated-inputs]:
Add EMACS-PKG-INFO.

Change-Id: Ic54be88146277a6838eb9b55eeab8c190d2a0c01
 2023-11-15 14:18:16 +01:00
Ludovic Courtès f87c955725
gnu: spindle: Update to 0.13; remove input labels. 
* gnu/packages/admin.scm (spindle): Update to 0.13.
[inputs]: Remove labels.

Change-Id: I2ccaaf2385797d81de2b1ffe28452281b4e5ae90
 2023-11-15 11:36:21 +01:00
Ludovic Courtès 006f9f0f21
gnu: spindle: Fix compilation with GCC 11. 
* gnu/packages/admin.scm (spindle)[arguments]: Add CXXFLAGS
to #:configure-flags.

Change-Id: I660228b8839a524791273f3fc7b6935d704b6715
 2023-11-15 11:36:21 +01:00
Ludovic Courtès aaee0e4af3
gnu: launchmon: Fix compilation with GCC 11. 
* gnu/packages/admin.scm (launchmon)[arguments]: New field.

Change-Id: I30665896ef90e74b91055c85bcfe991af24f3a38
 2023-11-15 11:36:20 +01:00
Ludovic Courtès f8cad88615
gnu: intel-mpi-benchmarks: Update to 2021.3. 
* gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Update to
2021.3.
 2023-11-15 11:36:20 +01:00
Ludovic Courtès ad2fcbfca4
gnu: openmpi: Update to 4.1.6. 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.6.
 2023-11-15 11:36:20 +01:00
Ludovic Courtès 59d29ebbb2
gnu: psm2: Update to 12.0. 
* gnu/packages/linux.scm (psm2): Update to 12.0.
 2023-11-15 11:36:20 +01:00
Ludovic Courtès 8c1c045a87
gnu: libfabric: Update to 1.19.0. 
* gnu/packages/linux.scm (libfabric): Update to 1.19.0.
 2023-11-15 11:36:20 +01:00
Ludovic Courtès 3f7eeaa57c
gnu: rdma-core: Update to 48.0. 
* gnu/packages/linux.scm (rdma-core): Update to 48.0.
 2023-11-15 11:36:20 +01:00
Ludovic Courtès 975350fab7
gnu: ucx: Update to 1.15.0. 
* gnu/packages/fabric-management.scm (ucx): Update to 1.15.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Update for 1.15.0.
 2023-11-15 11:36:20 +01:00
Ludovic Courtès d117c6b422
gnu: opensm: Update to 3.3.24. 
* gnu/packages/fabric-management.scm (opensm): Update to 3.3.24.
 2023-11-15 11:36:20 +01:00
Ludovic Courtès f1f8d56b75
gnu: hwloc: Update to 2.9.3. 
* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.3.
 2023-11-15 11:36:19 +01:00
Ludovic Courtès 96753702a0
gnu: slurm: Add 23.02.6. 
* gnu/packages/parallel.scm (slurm): Update to 23.02.6.
(slurm-22.05): New variable.
 2023-11-15 11:36:19 +01:00
Ludovic Courtès d67fa732f7
gnu: opensm: Use gexps. 
* gnu/packages/fabric-management.scm (opensm)[arguments]: Use gexps.
 2023-11-15 11:36:19 +01:00
Ludovic Courtès ab6f63f3cb
gnu: opensm: Use the right version string for the doc directory. 
Previously, when built with ‘--with-latest=opensm’, the package would
install its documentation under a directory with the wrong version
string.

* gnu/packages/fabric-management.scm (opensm)[arguments]: Use the name
and version of THIS-PACKAGE.
 2023-11-15 11:36:19 +01:00
Ricardo Wurmus b712e563cf
gnu: soci: Add PIE flag. 
* gnu/packages/databases.scm (soci)[arguments]: Set CMAKE_CXX_FLAGS to add
-fPIE.

Change-Id: I79527759d0d35833168f5106a9d6f372375a8ebe
 2023-11-14 23:46:08 +01:00
Josselin Poiret bd0f217321
gnu: agda-1lab: Update to 549fdb1c948a975e90e70f871993a4a4239aa280. 
* gnu/packages/agda.scm (agda-1lab): Update to
549fdb1c948a975e90e70f871993a4a4239aa280.

Change-Id: Iad77350fea5a6378e836cbd18c1f4a51bd5a5f0e
 2023-11-14 13:47:53 +01:00
Josselin Poiret c5c2a82082
gnu: agda-cubical: Update to 0.6. 
* gnu/packages/agda.scm (agda-cubical): Update to 0.6.

Change-Id: I1d6edc44755260e505985fb974c632ec6fff2b49
 2023-11-14 13:47:53 +01:00
Josselin Poiret 5f4b3ccf50
gnu: agda-categories: Adapt to agda-stdlib 1.7.3. 
* gnu/packages/patches/agda-categories-use-stdlib-1.7.3.patch: New patch.
* gnu/packages/agda.scm (agda-categories)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I25f16d55f14465a1dae882fd8ec47a95f8598e5c
 2023-11-14 13:47:10 +01:00
Josselin Poiret 7374e14f51
gnu: agda-stdlib: Update to 1.7.3. 
* gnu/packages/agda.scm (agda-stdlib): Update to 1.7.3.

Change-Id: Ic941073814a6a2150d470fc05218dc8d19954445
 2023-11-14 13:30:49 +01:00
Josselin Poiret a521757306
gnu: agda: Update to 2.6.4. 
* gnu/packages/agda.scm (agda): Update to 2.6.4.  Also build with
optimizations and cluster counting support.
* gnu/packages/patches/agda-use-sphinx-5.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I98a66678ec401b9201d9fd3a0f606fff9767b4bc
 2023-11-14 13:30:48 +01:00
Josselin Poiret 5cb2574243
gnu: Add ghc-text-icu. 
* gnu/packages/haskell-xyz.scm (ghc-text-icu): New variable.

Change-Id: I553f1fef4e76aeea6d09901917fd5d6032c23d46
 2023-11-14 13:30:45 +01:00
Nicolas Goaziou b25954181c
gnu: emacs-denote: Update to 2.1.0. 
* gnu/packages/emacs-xyz.scm (emacs-denote): Update to 2.1.0.

Change-Id: I4d0f585604ef049480842b4c052edd1aef300e15
 2023-11-14 13:21:41 +01:00
Nicolas Goaziou cb399d96fb
gnu: emacs-org: Update to 9.6.12. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.6.12.

Change-Id: I0d2b063526f24b7104fcbab972f212e279060f27
 2023-11-14 13:21:41 +01:00
Nicolas Goaziou 3254429a41
gnu: emacs-package-lint: Update to 0.21. 
* gnu/packages/emacs-xyz.scm (emacs-package-lint): Update to 0.21.

Change-Id: I82e28b8e1c211389e99f1947c5c7ddfcba893612
 2023-11-14 13:21:41 +01:00
Nicolas Goaziou 21822095e8
gnu: emacs-compat: Update to 29.1.4.4. 
* gnu/packages/emacs-xyz.scm (emacs-compat): Update to 29.1.4.4.

Change-Id: I11705cb0c2b50bb445711bfdfdb142557aa58b04
 2023-11-14 13:21:40 +01:00
Nicolas Goaziou b5d419b4ab
gnu: emacs-flycheck-grammalecte: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte)[arguments]Use
G-expressions.
<#:exclude>: Remove non-existing excluded file.
<#:emacs>: Use EMACS-NO-X.
<#:phases>: Use G-expressions.

Change-Id: Ic5a3c5e3f5271e75cd369cdd40ce210d7c2b859b
 2023-11-14 13:21:40 +01:00