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Author SHA1 Message Date
Ricardo Wurmus 92a1cb9285
gnu: powertabeditor: Update to 2.0.0-alpha10. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha10.
[arguments]: Remove "set-target-directories" phase; disable additional tests.
 2017-08-20 14:00:04 +02:00
Ricardo Wurmus 17cddc1714
gnu: Add r-annotationfilter. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
 2017-08-20 14:00:04 +02:00
Andy Wingo 96d36f385c
gnu: Add gnome-default-applications. 
* gnu/packages/gnome.scm (gnome-default-applications): New public variable.
(gnome): Propagate gnome-default-applications so that nautilus is associated
with folders, not baobab.
 2017-08-20 13:11:06 +02:00
Andy Wingo a9dbefdc9d
gnu: gnome: Propagate font-dejavu. 
* gnu/packages/gnome.scm (gnome): Add font-dejavu to propagated inputs, to
  provide a better default for "Monospace".  Otherwise the terminal looks
  horrible and defaults to Nimbus Mono, a Courier-like face.
 2017-08-20 13:10:56 +02:00
Andy Wingo 50631fe933
gnu: gobby: Re-add Gobby 0.4. 
* gnu/packages/gobby.scm (gobby-0.4): New variable.
 2017-08-20 11:30:43 +02:00
Andy Wingo 63ad9b80c7
gnu: gnome: Propagate more packages. 
* gnu/packages/gnome.scm (gnome): Add additional dependencies, inspired by
  Debian's "gnome-core" package.
 2017-08-20 11:16:56 +02:00
Andy Wingo 2941b347b6
gnu: grub-efi-bootloader: Specialize grub-install invocation. 
* gnu/bootloader/grub.scm (install-grub-efi): Fix grub-install invocation for
  EFI systems.
* gnu/system/examples/bare-bones.tmpl: Use the newer
"bootloader-configuration" syntax.
* gnu/system/examples/desktop.tmpl: Use bootloader-configuration sytax.  Also,
use the same label for the LUKS-mapped device and the root partition.  Remove
unneeded "title" field for the file-system based on LUKS; as noted in the
manual, the "title" field is ignored for mapped devices.
* gnu/system/examples/lightweight-desktop.tmpl: Use bootloader-configuration,
and use grub-efi-bootloader.
 2017-08-20 11:16:42 +02:00
Arun Isaac 97291c0c7c
gnu: gobby: Update to 0.5.0. 
* gnu/packages/gobby.scm (gobby): Update to 0.5.0.
[inputs]: Remove libnet6 and obby. Add libinfinity. Sort.
[arguments]: Add move-executable phase.
 2017-08-20 10:52:56 +05:30
Arun Isaac 6a84ec8eb3
gnu: Add libinfinity. 
* gnu/packages/gobby.scm (libinfinity): New variable.
 2017-08-20 10:52:55 +05:30
Leo Famulari 36ed934dfe
gnu: icedtea@3: Update to 3.5.1. 
* gnu/packages/java.scm (icedtea-8): Update to 3.5.1.
 2017-08-19 18:50:04 -04:00
Leo Famulari 0c2e2b660d
gnu: icedtea@2: Update to 2.6.11 [security fixes]. 
Fixes CVE-2017-{10053,10067,10074,10081,10087,10089,10090,10096,10101,10102,
10107,10108,10109,10110,10111,10115,10116,10118,10135,10074,10176}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.11.
 2017-08-19 18:50:01 -04:00
Thomas Danckaert 7b87132f6e
gnu: libreoffice: Update to 5.3.5.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.5.2.
 2017-08-19 22:46:03 +02:00
Efraim Flashner 128c9b9269
gnu: perl-www-mechanize: Update source uri. 
* gnu/packages/web.scm (perl-www-mechanize)[source]: Update to new uri.
 2017-08-19 21:52:22 +03:00
Marius Bakke 7eb09e39ed
gnu: perl-net-server: Update to 2.009. 
* gnu/packages/web.scm (perl-net-server): Update to 2.009.
 2017-08-19 16:43:38 +02:00
Marius Bakke 68d5906c06
gnu: perl-www-mechanize: Update to 1.86. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.86.
[native-inputs]: Add PERL-TEST-DEEP, PERL-TEST-FATAL, PERL-TEST-OUTPUT and
PERL-TEST-WARNINGS.
[propagated-inputs]: Add PERL-HTML-TREE.
 2017-08-19 16:43:37 +02:00
Marius Bakke f87c1107d6
gnu: perl: Work around more "dotless @INC" build issues. 
* gnu/packages/perl.scm (perl-hash-fieldhash,
  perl-string-camelcase)[arguments]: Add 'set-perl-search-path' phase.
 2017-08-19 16:43:37 +02:00
Marius Bakke 1cd5f1776d
gnu: perl-moosex-types-datetime: Update to 0.13. 
* gnu/packages/perl.scm (perl-moosex-types-datetime): Update to 0.13.
 2017-08-19 16:43:37 +02:00
Marius Bakke 55cca6ac61
gnu: perl-plack-middleware-reverseproxy: Provide Module::Install. 
* gnu/packages/web.scm (perl-plack-middleware-reverseproxy)[native-inputs]:
Add PERL-MODULE-INSTALL.
 2017-08-19 16:43:37 +02:00
Tobias Geerinckx-Rice e121be1e15
gnu: python-netaddr: Update to 0.7.19. 
* gnu/packages/python.scm (python-netaddr): Update to 0.7.19.
 2017-08-19 02:17:43 +02:00
Tobias Geerinckx-Rice b7585ca3b9
gnu: lz4: Update to 1.8.0. 
* gnu/packages/compression.scm (lz4): Update to 1.8.0.  Fix typo in comment.
[source]: Remove patch.
* gnu/packages/patches/lz4-fix-test-failures.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice 00d9124d40
gnu: lz4: Use recommended home page. 
* gnu/packages/compression.scm (lz4)[home-page]: Use lz4.org.
 2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice 865aacc9fa
gnu: Remove libgames-support. 
It was simply the old name (and version) of libgnome-games-support.

* gnu/packages/gnome.scm (libgames-support): Remove variable.  Move the
inherited fields...
(libgnome-games-support): ...to here.
 2017-08-19 02:17:41 +02:00
Leo Famulari d9f15d7e48
gnu: newsbeuter: Fix CVE-2017-12904. 
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/syndication.scm (newsbeuter)[source]: Use it.
 2017-08-18 17:24:47 -04:00
Marius Bakke 8c0c0c4def
gnu: python-pygit2: Update to 0.26.0. 
* gnu/packages/python.scm (python-pygit2): Update to 0.26.0.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Skip one
more test. Use unittest.skipIf instead of deleting sections.
 2017-08-18 21:33:31 +02:00
Tobias Geerinckx-Rice 1f9c2351d7
gnu: gnome-shell: Update to 3.24.3. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.24.3.
 2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice cd5db77151
gnu: gnome-control-center: Update to 3.24.3. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.24.3.
 2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice d95d6d931e
gnu: gnome-keyring: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.20.1.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 32d00d78dc
gnu: libgnome-games-support: Update to 1.2.2. 
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.2.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 9d086c075d
gnu: gjs: Update to 1.48.6. 
* gnu/packages/gnome.scm (gjs): Update to 1.48.6.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 69d0674830
gnu: shotwell: Update to 0.26.3. 
* gnu/packages/gnome.scm (shotwell): Update to 0.26.3.
 2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice 7c94a3599e
gnu: totem-pl-parser: Update to 3.10.8. 
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.8.
 2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice 94793c1d0a
gnu: perl-crypt-openssl-bignum: Update to 0.08. 
* gnu/packages/tls.scm (perl-crypt-openssl-bignum): Update to 0.08.
 2017-08-18 14:54:59 +02:00
Thomas Danckaert 598b5481a4
gnu: freerdp: Update inputs. 
* gnu/packages/rdesktop.scm (freerdp) [native-inputs]: Add libxslt, libxml2
  and docbook-xsl.
  [inputs]: Add libjpeg, remove gstreamer, gst-plugins-base, libxml2 and
  libxslt.
  [arguments]: Enable features JPEG and SSE2 (on x86_64), and set up
  docbook-xsl.
 2017-08-18 14:52:35 +02:00
Thomas Danckaert cc81f1c349
gnu: freerdp: Revert to version 1.1. 
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
  branch 1.1.  [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
  freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
  gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-08-18 14:52:35 +02:00
Efraim Flashner c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64. 
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-18 15:50:25 +03:00
Efraim Flashner d983a1cb8e
gnu: libksysguard: Update to 5.10.4. 
* gnu/packages/kde.scm (libksysguard ): Update to 5.10.4.
 2017-08-18 15:50:23 +03:00
Efraim Flashner de5a235c79
gnu: kde-framework: Update to 5.37.0. 
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, attica,
bluez-qt, breeze-icons, kapidox, karchive, kcodecs, kconfig,
kcoreaddons, kdbusaddons, kdnssd, kguiaddons, kil8n, kidletime,
kitemmodules, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons,
kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, solid,
sonnet, threadweaver, kauth, kcompletion, kcrash, kimageformats,
kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo,
kactivities, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets,
kdeclarative, kded, kdesignerplugin, kdesu, kemoticons, kglobalaccel,
kiconthemes, kinit, kio, knewstuff, knotifyconfig, kparts, kpeople,
krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui,
kxmlrpcclient, plasma-framework, kde-framworkintegration,
kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.37.0.
(bluez-qt)[arguments]: Disable tests.
(kcodecs, khtml)[native-inputs]: Add gperf.
(ksyntaxhighlighting)[properties]: New field, add upstream-name.
(kimageformats, baloo)[arguments]: Add phase to disable failing test.
(krunner)[inputs]: Add kwindowsystem.
 2017-08-18 15:50:22 +03:00
Efraim Flashner 26ca43bb60
gnu: freeipmi: Update to 1.5.7. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.7.
 2017-08-18 15:50:20 +03:00
Nicolas Goaziou 1286ff6161
gnu: giac-xcas: Update to 1.2.3-57. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-57.
 2017-08-18 14:31:06 +02:00
Arun Isaac c5361b7c3d
gnu: Add rtl-sdr. 
* gnu/packages/ham-radio.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ham-radio.scm (rtl-sdr): New variable.
 2017-08-18 16:54:58 +05:30
Tobias Geerinckx-Rice 2559401037
gnu: youtube-dl: Update to 2017.08.18. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.18.
 2017-08-18 08:11:45 +02:00
Tobias Geerinckx-Rice 2c7321eaa7
gnu: libconfuse: Update to 3.2.1. 
* gnu/packages/wm.scm (libconfuse): Update to 3.2.1.
 2017-08-18 08:11:45 +02:00
Eric Bavier 623cc34cd2
gnu: rpm: Update to 4.13.0.1. 
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch.  Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-17 21:39:18 -05:00
Arun Isaac 52d445f130
gnu: Add rss-bridge. 
* gnu/packages/web.scm (rss-bridge): New variable.
 2017-08-18 07:18:04 +05:30
Marius Bakke 961012a0a0
gnu: Add missing import. 
This is a followup to d016b60fa3.

* gnu/packages/networking.scm (gnu): Use (gnu packages glib).
 2017-08-18 00:48:25 +02:00
Dave Love a099570249
gnu: openmpi: Add RDMA and libfabric support. 
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:28 +02:00
Dave Love ae5947b0ef
gnu: Add libfabric. 
* gnu/packages/linux.scm (libfabric): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:28 +02:00
Dave Love 3eb7c00038
gnu: libnl: Add "python2" and "python3" outputs. 
* gnu/packages/linux.scm (libnl)[native-inputs]: Add SWIG and PKG-CONFIG.
[inputs]: Add PYTHON-2 and PYTHON-3.
[outputs]: Add python2, python3.
[arguments]: Add 'install-python' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:27 +02:00
Dave Love d80a47f2f5
gnu: libnl: Add "doc" output. 
* gnu/packages/linux.scm (libnl)[native-inputs]: Add doc origin.
[outputs]: New field.
[arguments]: Add 'install-doc' phase. New field.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:27 +02:00
Nicolas Goaziou d016b60fa3
gnu: wireshark: Update to 2.4.0. 
* gnu/packages/networking.scm (wireshark): Update to 2.4.0.  Add "libssh",
  "libxml2", "qtbase" and "qttools" as inputs.  Remove unused "bison", "flex"
  and "gtk+" inputs.
 2017-08-18 00:17:24 +02:00
Marius Bakke 9fa0c0e6fa
gnu: libmspack: Update to 0.6 [fixes CVE-2017-{6419,11423}]. 
* gnu/packages/compression.scm (libmspack): Update to 0.6.
 2017-08-17 22:32:51 +02:00
Mark H Weaver 2d72ddf529
gnu: linux-libre: Update to 4.12.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.8.
(%linux-libre-hash): Update hash.
 2017-08-17 14:41:18 -04:00
Mark H Weaver 1e070766c0
gnu: linux-libre@4.9: Update to 4.9.44. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.44.
 2017-08-17 14:40:29 -04:00
Mark H Weaver 821f18719d
gnu: linux-libre@4.4: Update to 4.4.83. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.83.
 2017-08-17 14:39:31 -04:00
Christopher Baines f2d7a492df
web: Check for the existance of SSL related files. 
This adds back the previous behaviour of the nginx-service-type, where the
service would check at the time when the configuration is generated if the SSL
certificate and certificate key file exists.

* gnu/services/web.scm (emit-nginx-server-config): Add back check for SSL
  related files.
 2017-08-17 18:32:27 +01:00
Andy Wingo c9aa261be4
gnu: services: Nginx configs can reference store 
* gnu/services/web.scm (config-domain-strings, config-index-strings): Emit
lists instead of strings.
(emit-nginx-location-config, emit-nginx-server-config)
(emit-nginx-upstream-config): Rename from nginx-location-config,
default-nginx-server-config, and nginx-upstream-config.  Emit lists instead of
strings.
(flatten): New helper.
(default-nginx-config): Use flatten helper to write nginx conf.  This allows
location configs to reference store values.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2017-08-17 18:32:23 +01:00
Manolis Ragkousis e9a599cdce
gnu: Add OpenMW. 
* gnu/packages/game-development.scm (openmw): New variable.
 2017-08-17 19:40:33 +03:00
Manolis Ragkousis 42d0d13de8
gnu: Add mygui. 
* gnu/packages/game-development.scm (mygui): New variable.
 2017-08-17 19:35:28 +03:00
Manolis Ragkousis dd75a9a22c
gnu: Add ogre. 
* gnu/packages/graphics.scm (ogre): New variable.
 2017-08-17 19:11:35 +03:00
Ricardo Wurmus bf3fa99654
gnu: Add r-methylkit. 
* gnu/packages/bioinformatics.scm (r-methylkit): New variable.
 2017-08-17 18:00:17 +02:00
Ricardo Wurmus 8a39e4a553
gnu: sassc: Update to 3.4.5. 
* gnu/packages/web.scm (sassc): Update to 3.4.5.
[arguments]: Add PREFIX to make-flags, disable tests, remove custom install
phase.
 2017-08-17 18:00:17 +02:00
Alex Vong f30ff28b96
gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}]. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-08-17 11:40:29 -04:00
Ricardo Wurmus 05e8a3ef0f
gnu: Add r-ksamples. 
* gnu/packages/cran.scm (r-ksamples): New variable.
 2017-08-17 17:26:13 +02:00
Ricardo Wurmus abcb849405
gnu: Add r-suppdists. 
* gnu/packages/cran.scm (r-suppdists): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 8d22007380
gnu: Add r-energy. 
* gnu/packages/cran.scm (r-energy): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 6b4a9aec23
gnu: Add r-fitdistrplus. 
* gnu/packages/cran.scm (r-fitdistrplus): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 521e0703d8
gnu: Add r-limsolve. 
* gnu/packages/cran.scm (r-limsolve): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus a3e36d3772
gnu: Add r-lpsolve. 
* gnu/packages/cran.scm (r-lpsolve): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 212f612040
gnu: Add r-qvalue. 
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus d4a1e918cb
gnu: Add r-fastseg. 
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus b31e4a9693
gnu: Add r-emdbook. 
* gnu/packages/cran.scm (r-emdbook): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 97cb349dc1
gnu: r-trimcluster: Update license. 
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 8c72b83096
gnu: Add r-bbmle. 
* gnu/packages/cran.scm (r-bbmle): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus d6b156dc04
gnu: Add r-inline. 
* gnu/packages/cran.scm (r-inline): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 062b6dbd25
gnu: Add r-lmtest. 
* gnu/packages/cran.scm (r-lmtest): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 58db98c9f2
gnu: Add r-extremes. 
* gnu/packages/cran.scm (r-extremes): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus 28476b4bc0
gnu: Add r-distillery. 
* gnu/packages/cran.scm (r-distillery): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus 6427e62005
gnu: Add r-lmoments. 
* gnu/packages/cran.scm (r-lmoments): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus e389d10f55
gnu: Add r-rmtstat. 
* gnu/packages/cran.scm (r-rmtstat): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus b723dedf81
gnu: Add r-rook. 
* gnu/packages/web.scm (r-rook): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus bc0081e76f
gnu: Add r-sp. 
* gnu/packages/cran.scm (r-sp): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus 3349faecf5
gnu: Add r-proxy. 
* gnu/packages/cran.scm (r-proxy): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus ac8402072b
gnu: Add r-ggally. 
* gnu/packages/cran.scm (r-ggally): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus c9c6f4b543
gnu: Add r-progress. 
* gnu/packages/cran.scm (r-progress): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus 71be51d531
gnu: Add r-reshape. 
* gnu/packages/cran.scm (r-reshape): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus 18a16ceb7c
gnu: Add r-prettyunits. 
* gnu/packages/cran.scm (r-prettyunits): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus 49c9c29790
gnu: Add r-ffbase. 
* gnu/packages/cran.scm (r-ffbase): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus a7f0faa204
gnu: Add r-ff. 
* gnu/packages/cran.scm (r-ff): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus f2e974e1a2
gnu: Add r-fastmatch. 
* gnu/packages/cran.scm (r-fastmatch): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus e0268ff2e4
gnu: Add r-getoptlong. 
* gnu/packages/cran.scm (r-getoptlong): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus d3c67e1b45
gnu: Add r-dendextend. 
* gnu/packages/cran.scm (r-dendextend): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus 0548660420
gnu: Add r-compare. 
* gnu/packages/cran.scm (r-compare): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus eb60149eee
gnu: Add r-png. 
* gnu/packages/image.scm (r-png): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus 5cc79c9c50
gnu: Add r-powerlaw. 
* gnu/packages/cran.scm (r-powerlaw): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2856369fad
gnu: Add r-circlize. 
* gnu/packages/cran.scm (r-circlize): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4847a62ea9
gnu: Add r-globaloptions. 
* gnu/packages/cran.scm (r-globaloptions): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2bdb5c3f78
gnu: Add r-shape. 
* gnu/packages/cran.scm (r-shape): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus c69d27db57
gnu: Add r-calibrate. 
* gnu/packages/cran.scm (r-calibrate): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 33ce12e293
gnu: Add r-auc. 
* gnu/packages/cran.scm (r-auc): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4a007ffafe
gnu: Add r-annotationhub. 
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 5f96f30f5d
gnu: Add r-interactivedisplaybase. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
 2017-08-17 17:25:46 +02:00
Efraim Flashner a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b. 
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
 2017-08-17 18:17:00 +03:00
Efraim Flashner aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures. 
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
 2017-08-17 18:16:57 +03:00
Nicolas Goaziou 721e1987d0
gnu: Add mgba. 
* gnu/packages/games.scm (mgba): New public variable.
 2017-08-17 10:56:04 +02:00
Ricardo Wurmus a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
 2017-08-17 09:12:46 +02:00
Efraim Flashner e3b861ce38
gnu: python-cython: Update to 0.26. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-17 06:46:06 +03:00
Danny Milosavljevic d6ef422fe7
gnu: Add fbreader. 
* gnu/packages/ebook.scm (fbreader): New variable.
 2017-08-17 02:00:51 +02:00
Danny Milosavljevic 84a52639c9
gnu: Add liblinebreak. 
* gnu/packages/ebook.scm (liblinebreak): New variable.
 2017-08-17 01:56:38 +02:00
Tobias Geerinckx-Rice f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3. 
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
 2017-08-16 22:35:11 +02:00
Tobias Geerinckx-Rice f37995fa20
gnu: python-cryptography: Update to 2.0.3. 
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
 2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice f886e7cab1
gnu: limnoria: Update to 2017.08.03. 
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
 2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice e2a4c13023
gnu: cbatticon: Update to 1.6.6. 
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
 2017-08-16 22:35:10 +02:00
Julien Lepiller f207984985
gnu: Add gpick. 
* gnu/packages/image.scm (gpick): New variable.
 2017-08-16 21:37:33 +03:00
ng0 d0b13d7b9b
gnu: fossil: Update to 2.2. 
* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
 2017-08-16 21:37:32 +03:00
Efraim Flashner ab1bd285db
gnu: connman: Update to 1.35. 
* gnu/packages/connman.scm (connman): Update to 1.35.
 2017-08-16 21:37:29 +03:00
Kei Kebreau e664200c0c
gnu: Add ltris. 
* gnu/packages/games.scm (ltris): New variable.
 2017-08-16 11:28:12 -04:00
Alex Vong af4db693db
gnu: Add ghc-gitrev. 
* gnu/packages/haskell.scm (ghc-gitrev): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong e0ca14c7a8
gnu: Add ghc-geniplate-mirror. 
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong 298af2a8da
gnu: Add ghc-monadplus. 
* gnu/packages/haskell.scm (ghc-monadplus): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong 005a08e3dc
gnu: Add ghc-fail. 
* gnu/packages/haskell.scm (ghc-fail): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong 1eced2a7a8
gnu: Add ghc-edisoncore. 
* gnu/packages/haskell.scm (ghc-edisoncore): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong 212ae09541
gnu: Add ghc-edisonapi. 
* gnu/packages/haskell.scm (ghc-edisonapi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong a623fd7fed
gnu: Add ghc-murmur-hash. 
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:38 +02:00
Alex Vong ca48a34594
gnu: Add ghc-data-hash. 
* gnu/packages/haskell.scm (ghc-data-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:38 +02:00
Efraim Flashner adcb30642c
gnu: pspp: Update to 0.11.0. 
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
 2017-08-16 17:57:40 +03:00
Alex Vong 96f23b62e0
gnu: Add ghc-equivalence. 
* gnu/packages/haskell.scm (ghc-equivalence): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:13 +02:00
Alex Vong 3f8b8e731c
gnu: Add ghc-boxes. 
* gnu/packages/haskell.scm (ghc-boxes): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:13 +02:00
Alex Vong be04f8020a
gnu: Add ghc-edit-distance. 
* gnu/packages/haskell.scm (ghc-edit-distance): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:13 +02:00
Alex Vong 867ed9776c
gnu: Add ghc-stmonadtrans. 
* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:12 +02:00
Alex Vong f99a57dc28
gnu: Add ghc-strict. 
* gnu/packages/haskell.scm (ghc-strict): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:12 +02:00
Alex Vong c12562e1e8
gnu: cpphs: Update to 1.20.8. 
* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:08 +02:00
ng0 2f7966c8e2
gnu: font-google-noto: Use font-build-system. 
* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:18:50 +02:00
Efraim Flashner d534f3a4d3
gnu: r-mzr: Fix building on aarch64 and armhf. 
* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
 2017-08-16 12:36:25 +03:00
Efraim Flashner 953a12fa9b
gnu: hdf4: Fix building on aarch64. 
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
 2017-08-16 09:33:11 +03:00
Leo Famulari 8343d373d5
gnu: cgit: Don't build cgit's special 'git:src' input. 
This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.

* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10): Remove variable.
 2017-08-15 17:59:22 -04:00
Christopher Baines 6230e155af
gnu: Fix memcached service startup. 
Memcached changes to the memcached user from root before writing the PID
file. This means that it must be able to write the PID file as the memcached
user.

To make this work, create the /var/run/memcached directory when the service
starts, make it owned by memcached, and change memcached to write the PID file
to /var/run/memcached/pid.

This wasn't picked up by the system test as the "service running" part was too
permissive, and only failed on an error. Instead, test the response from
calling start-service and check that the PID is a number.

* gnu/services/databases.scm (memcached-activation): New variable.
  (memcached-shepherd-service): Change PID file location.
  (memcached-service-type): Extend the activation-service-type.
* gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service
  running" test to check the response from the shepherd.
 2017-08-15 22:24:15 +01:00
Danny Milosavljevic 2434f5cedf
gnu: Add dssi. 
* gnu/packages/music.scm (dssi): New variable.
 2017-08-15 20:58:03 +02:00
Oleg Pykhalov 425d66f7a7
gnu: Add emacs-highlight-symbol. 
* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-15 20:52:58 +02:00
ng0 be69176bbd
gnu: fish-guix: Use new download URL. 
* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-15 20:41:23 +02:00
Marius Bakke dca82aefbc
gnu: p11-kit: Update to 0.23.8. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
 2017-08-15 20:38:02 +02:00
Leo Famulari 6550e5ad64
gnu: signify: Update to 22. 
* gnu/packages/crypto.scm (signify): Update to 22.
 2017-08-15 13:27:30 -04:00
Ben Woodcroft 06f31e50b1
gnu: diamond: Update to 0.9.10. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
 2017-08-15 18:49:33 +10:00
Efraim Flashner 3837108e40
gnu: bcftools: Fix building on aarch64. 
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-15 10:31:20 +03:00
Mark H Weaver 09ec5a0f0c
Merge branch 'master' into core-updates 2017-08-15 03:10:14 -04:00
Efraim Flashner 2d430f2923
Revert "gnu: pspp: Update to 0.11.0." 
This FTBFS on x86_64 and i686.

This reverts commit f4c808df5b.
 2017-08-15 10:03:40 +03:00
Tobias Geerinckx-Rice 14f366e58d
gnu: youtube-dl: Update to 2017.08.13. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
 2017-08-15 01:42:49 +02:00
Marius Bakke f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5. 
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
 2017-08-15 01:08:01 +02:00
Leo Famulari 15428168ea
gnu: cvs: Fix CVE-2017-12836. 
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
 2017-08-14 15:55:31 -04:00
Marius Bakke 36bfcf7e3a
gnu: git@2.10: Update to 2.10.4 [fixes CVE-2017-1000117]. 
...also disable tests, since they broke after c9f4f56b24.

* gnu/packages/version-control.scm (git@2.10): Update to 2.10.4.
[arguments]: New field.
 2017-08-14 21:44:24 +02:00
Efraim Flashner 2bccf1c0ec
gnu: gcc@7: Update to 7.2.0. 
* gnu/packages/gcc.scm (gcc@7): Update to 7.2.0.
[source]: Switch to xz compression.
 2017-08-14 22:30:07 +03:00