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125640 commits

Author SHA1 Message Date
André Batista be214b56c0
gnu: prosody: Update to 0.12.4.
* gnu/packages/messaging.scm (prosody): Update to 0.12.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:55 +02:00
Artyom V. Poptsov 45fbcc452f
gnu: go-ipfs: Update to 0.14.0.
* gnu/packages/ipfs.scm (go-ipfs): Update to 0.14.0.
  [source]: Change "go-ipfs" to "kubo" in the source link.
  [arguments]: Rename "go-ipfs" to "kubo".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:55 +02:00
Nikolaos Chatzikonstantinou 3d4d7fec05
doc: Fix channel name typo.
When the manual has "variant-personal-packages", it actually refers to the
channel "variant-packages", as it is named so elsewhere.

To correct this, I ran the command

    grep -r -l variant-personal-packages | xargs \
    sed -i 's/variang-personal-packages/variant-packages/g'

* doc/guix.texi (Specifying Additional Channels): Fix channel name typo.
* po/doc/guix-manual.de.po: Fix channel name typo.
* po/doc/guix-manual.es.po: Fix channel name typo.
* po/doc/guix-manual.fr.po: Fix channel name typo.
* po/doc/guix-manual.pt_BR.po: Fix channel name typo.
* po/doc/guix-manual.ru.po: Fix channel name typo.
* po/doc/guix-manual.zh_CN.po: Fix channel name typo.

Signed-off-by: Nikolaos Chatzikonstantinou <nchatz314@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:54 +02:00
Nikolaos Chatzikonstantinou 2467b7d1fb
system: bare-bones: Add comments about nss-cert and NTP service.
TLS errors may be confusing to some users.  Two comments are added: one
comment should help clarify the extra step required for root CA certificates
to be installed, while the other will help users keep their clocks
synchronized, another source of TLS errors due to clock drift.

* gnu/system/examples/bare-bones.tmpl: Add nss-cert and NTP service comments.

Signed-off-by: Nikolaos Chatzikonstantinou <nchatz314@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:54 +02:00
Ludovic Courtès 7b710836a1
doc: Suggest keeping record type descriptors private.
* doc/contributing.texi (Data Types and Pattern Matching): Add paragraph
about keeping RTDs private.

Suggested-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-10-05 23:14:54 +02:00
Ludovic Courtès 97927608cb
Revert "system: accounts: Export <user-account>."
This reverts commit 03795e2ba2.
Fixes <https://issues.guix.gnu.org/66279>.
2023-10-05 23:14:54 +02:00
B. Wilson 87b3ac13fe
gnu: Add apple-bash.
* gnu/packages/apple.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODELS): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:54 +02:00
Ludovic Courtès 762fdbdef5
perform-download: Set PATH before invoking ‘git’.
Fixes <https://issues.guix.gnu.org/66305>.
Reported by Guillaume Le Vaillant <glv@posteo.net>.

* guix/scripts/perform-download.scm (perform-git-download): Add call to
‘setenv’.
2023-10-05 23:14:53 +02:00
Distopico efab2a25be
gnu: rust-trybuild: Update 1.0.19 version hash.
Fixes <https://issues.guix.gnu.org/66345>.

* gnu/packages/crates-io.scm (rust-trybuild): Update 1.0.19 hash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:53 +02:00
Mekeor Melire 5694352c05
doc: Update bug-reference configuration snippet.
* doc/contributing.texi (The Perfect Setup)
<Viewing Bugs within Emacs>: Make bug-reference-bug-regexp match
more URLs based on issues.guix.gnu.org.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Suggested-by: Simon Tournier <zimon.toutoune@gmail.com>
2023-10-05 13:11:46 -04:00
Arun Isaac 0374640618
gnu: Add cgit-pink.
* gnu/packages/version-control.scm (cgit-pink): New variable.
2023-10-05 17:38:33 +01:00
Arun Isaac db52c06c3d
gnu: cgit: Fix cross compilation.
* gnu/packages/version-control.scm (cgit)[native-inputs]: Move bzip2, gzip and
xz to ...
[inputs]: ... here. Add bash-minimal.
[arguments]: Use cc-for-target.
2023-10-05 17:38:32 +01:00
Arun Isaac faad060771
gnu: cgit: Update package style.
* gnu/packages/version-control.scm (cgit)[arguments]: Rewrite using
G-expressions. Do not return #t from custom phases.
2023-10-05 17:38:28 +01:00
Mathieu Othacehe 29243a9f39
gnu: python-pynetbox: Update to 7.2.0.
* gnu/packages/python-web.scm (python-pynetbox): Update to 7.2.0.
2023-10-05 18:31:11 +02:00
Timotej Lazar 21f3f30141
gnu: Add python-pynetbox.
* gnu/packages/python-web.scm (python-pynetbox): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05 17:23:48 +02:00
Sharlatan Hellseher 9917079bd7
gnu: Add WCSTools.
* gnu/packages/astronomy.scm (wcstools): New variable.
* gnu/packages/patches/wcstools-extend-makefiles.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05 17:07:16 +02:00
Ricardo Wurmus d37e24827a
gnu: r-bayesfactor: Update to 0.9.12-4.5.
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.5.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus bba0dc6e5d
gnu: r-puniform: Update to 0.2.7.
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.7.
[propagated-inputs]: Add r-numderiv.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus a7b9a558d5
gnu: r-lubridate: Update to 1.9.3.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.3.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 6015f41454
gnu: r-vgam: Update to 1.1-9.
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus f3a73e9ce5
gnu: r-rmarkdown: Update to 2.25.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.25.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 6535a7d047
gnu: r-withr: Update to 2.5.1.
* gnu/packages/statistics.scm (r-withr): Update to 2.5.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 3b9bb9c61e
gnu: r-openssl: Update to 2.1.1.
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 48dcf15dea
gnu: r-dbplyr: Update to 2.3.4.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus d9993b98c6
gnu: r-markdown: Update to 1.9.
* gnu/packages/statistics.scm (r-markdown): Update to 1.9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 8f145cafec
gnu: r-evaluate: Update to 0.22.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.22.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus a82e566cbc
gnu: r-plyr: Update to 1.8.9.
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 07bf9f857f
gnu: r-matrix: Update to 1.6-1.1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-1.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 8b56e8fd32
gnu: r-lattice: Update to 0.21-9.
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 93f0029067
gnu: r-varhandle: Update to 2.0.6.
* gnu/packages/cran.scm (r-varhandle): Update to 2.0.6.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus bbf8ac3229
gnu: r-mockery: Update to 0.4.4.
* gnu/packages/cran.scm (r-mockery): Update to 0.4.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 9e2434a2ac
gnu: r-paws: Update to 0.4.0.
* gnu/packages/cran.scm (r-paws): Update to 0.4.0.
[propagated-inputs]: Add r-paws-common.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus dee60226bb
gnu: r-paws-common: Update to 0.6.1.
* gnu/packages/cran.scm (r-paws-common): Update to 0.6.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 5a62f0cb03
gnu: r-tensorflow: Update to 2.14.0.
* gnu/packages/cran.scm (r-tensorflow): Update to 2.14.0.
[propagated-inputs]: Add r-lifecycle.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 9737b40053
gnu: r-exactextractr: Update to 0.10.0.
* gnu/packages/cran.scm (r-exactextractr): Update to 0.10.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus bb034d5a57
gnu: r-protolite: Update to 2.3.0.
* gnu/packages/cran.scm (r-protolite): Update to 2.3.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus ce99c51f8f
gnu: r-vroom: Update to 1.6.4.
* gnu/packages/cran.scm (r-vroom): Update to 1.6.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 2c6fb7a21f
gnu: r-delaporte: Update to 8.3.0.
* gnu/packages/cran.scm (r-delaporte): Update to 8.3.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 12774311dd
gnu: r-pdftools: Update to 3.4.0.
* gnu/packages/cran.scm (r-pdftools): Update to 3.4.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 06fb5cf520
gnu: r-vdiffr: Update to 1.0.7.
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.7.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 4d0861d307
gnu: r-mlr3misc: Update to 0.13.0.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.13.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 1d7dfe2f8d
gnu: r-seurat: Update to 4.4.0.
* gnu/packages/cran.scm (r-seurat): Update to 4.4.0.
[propagated-inputs]: Add r-purrr.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus f7b4b14d49
gnu: r-seuratobject: Update to 4.1.4.
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 9703a303f6
gnu: r-metafor: Update to 4.4-0.
* gnu/packages/cran.scm (r-metafor): Update to 4.4-0.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 509ad5c498
gnu: r-brms: Update to 2.20.4.
* gnu/packages/cran.scm (r-brms): Update to 2.20.4.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 2bcbcea451
gnu: r-projpred: Update to 2.7.0.
* gnu/packages/cran.scm (r-projpred): Update to 2.7.0.
[propagated-inputs]: Add r-gtools.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus d1f4bc7ae1
gnu: r-rstanarm: Update to 2.26.1.
* gnu/packages/cran.scm (r-rstanarm): Update to 2.26.1.
[propagated-inputs]: Add r-posterior.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus ee4d8fabbb
gnu: r-rsconnect: Update to 1.1.1.
* gnu/packages/cran.scm (r-rsconnect): Update to 1.1.1.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus b5fc66d0ec
gnu: r-erm: Update to 1.0-4.
* gnu/packages/cran.scm (r-erm): Update to 1.0-4.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 250f6b92f7
gnu: r-kutils: Update to 1.73.
* gnu/packages/cran.scm (r-kutils): Update to 1.73.
2023-10-05 15:16:28 +02:00