Tobias Geerinckx-Rice
2b1b27990b
gnu: python-graphene: Disable tests.
...
* gnu/packages/python.scm (python-graphene)[native-inputs]: Remove.
[arguments]: Disable #:tests.
2017-10-23 14:49:30 +02:00
Tobias Geerinckx-Rice
f737d9f2fb
gnu: python-pytest-django: Use python-pytest@3.
...
* gnu/packages/django.scm (python-pytest-django)[propagated-inputs]: Replace
python-pytest with python-pytest-3.0.
2017-10-23 14:49:30 +02:00
Tobias Geerinckx-Rice
ce4dfde0d8
gnu: miso: Update to 0.5.4.
...
* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4.
2017-10-23 14:49:29 +02:00
Efraim Flashner
1ee3079d78
gnu: cowsay: Run tests after install.
...
* gnu/packages/games.scm (cowsay)[arguments]: Delete 'check phase, add
custom 'check phase after install.
2017-10-23 11:44:17 +03:00
Efraim Flashner
3bf94bc8bc
gnu: criu: Add missing perl input.
...
* gnu/packages/virtualization.scm (criu)[native-inputs]: Add perl.
2017-10-23 09:50:33 +03:00
Ricardo Wurmus
fe420383e1
gnu: Add criu.
...
* gnu/packages/virtualization.scm (criu): New variable.
2017-10-23 08:09:05 +02:00
Ricardo Wurmus
de5308f526
gnu: Add libnet.
...
* gnu/packages/networking.scm (libnet): New variable.
2017-10-23 08:09:05 +02:00
Ludovic Courtès
d298c815e6
gexp: Add 'directory-union'.
...
* gnu/services.scm (directory-union): Move to...
* guix/gexp.scm (directory-union): ... here. New procedure.
* doc/guix.texi (G-Expressions): Document it.
2017-10-22 22:09:00 -07:00
Ludovic Courtès
dedb512f8f
gexp: Add 'file-union'.
...
* gnu/services.scm (file-union): Move to...
* guix/gexp.scm (file-union): ... here. New procedure.
* doc/guix.texi (G-Expressions): Document it.
2017-10-22 22:09:00 -07:00
Maxim Cournoyer
6e644cfdb3
services: base: Add file->udev-rule function.
...
This function allows passing a file-like object to the udev service.
* gnu/services/base.scm (file->udev-rule): New function.
* doc/guix.texi (Base Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 22:09:00 -07:00
Mark H Weaver
2f05dd6b4c
gnu: linux-libre: Update to 4.13.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.9.
(%linux-libre-hash): Update hash.
2017-10-23 00:53:38 -04:00
Mark H Weaver
1b635cafac
gnu: linux-libre@4.9: Update to 4.9.58.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.58.
2017-10-23 00:53:03 -04:00
Mark H Weaver
8e4a976c68
gnu: linux-libre@4.4: Update to 4.4.94.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.94.
2017-10-23 00:52:28 -04:00
Mark H Weaver
bb234ed825
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2017-10-23 00:51:34 -04:00
Ludovic Courtès
fc938a2775
gnu: lxqt-common: Remove.
...
This package is marked as deprecated upstream.
Fixes <https://bugs.gnu.org/28823 >.
* gnu/packages/lxqt.scm (lxqt-common): Remove.
2017-10-22 16:05:26 -07:00
Ludovic Courtès
ed9b09e4f0
gnu: impressive: Fix Python 2/3 dependency mismatch.
...
* gnu/packages/pdf.scm (impressive)[inputs]: Depend on PYTHON2-PYGAME.
2017-10-22 15:32:19 -07:00
rsiddharth
3a784700cd
gnu: Add ghc-aws.
...
* gnu/packages/haskell.scm (ghc-aws): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:19 -07:00
rsiddharth
95fb25bf59
gnu: Add ghc-conduit-combinators.
...
* gnu/packages/haskell.scm (ghc-condui-combinators): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
rsiddharth
463c39c339
gnu: ghc-conduit: Fix lint error.
...
* gnu/packages/haskell.scm (ghc-conduit)[description]: Fix lint error.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
rsiddharth
7bc18f412b
gnu: ghc-conduit: Update to 1.2.12.1.
...
* gnu/packages/haskell.scm (ghc-conduit): Update to 1.2.12.1.
[native-inputs]: Add "ghc-split".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
rsiddharth
ed4cc0c5e9
gnu: Add ghc-mono-traversable.
...
* gnu/packages/haskell.scm (ghc-mono-traversable): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
rsiddharth
f6094850d0
gnu: Add ghc-foldl.
...
* gnu/packages/haskell.scm (ghc-foldl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
rsiddharth
1896a2526d
gnu: Add ghc-vector-builder.
...
* gnu/packages/haskell.scm (ghc-vector-builder): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
rsiddharth
33109c822a
gnu: Add ghc-rebase.
...
* gnu/packages/haskell.scm (ghc-rebase): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
rsiddharth
24535a3d00
gnu: Add ghc-uuid.
...
* gnu/packages/haskell.scm (ghc-uuid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
rsiddharth
b999b0092e
gnu: Add ghc-uuid-types.
...
* gnu/packages/haskell.scm (ghc-uuid-types): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
rsiddharth
6eda263586
gnu: Add ghc-network-info.
...
* gnu/packages/haskell.scm (ghc-network-info): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
rsiddharth
0119f17f5d
gnu: Add ghc-cryptohash-sha1.
...
* gnu/packages/haskell.scm (ghc-cryptohash-sha1): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
rsiddharth
caac21006d
gnu: Add ghc-cryptohash-md5.
...
* gnu/packages/haskell.scm (ghc-cryptohash-md5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
rsiddharth
8155778f52
gnu: Add ghc-puremd5
...
* gnu/packages/haskell.scm (ghc-puremd5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
rsiddharth
f78ed5d56f
gnu: Add ghc-pretty-hex.
...
* gnu/packages/haskell.scm (ghc-pretty-hex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
rsiddharth
83c79ea0f8
gnu: Add ghc-crypto-api-tests.
...
* gnu/packages/haskell.scm (ghc-crypto-api-tests): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
e2f6116e78
gnu: Add ghc-crypto-api.
...
* gnu/packages/haskell.scm (ghc-crypto-api): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
933e78045d
gnu: Add ghc-entropy.
...
* gnu/packages/haskell.scm (ghc-entropy): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
16d4125e90
gnu: Add ghc-either.
...
* gnu/packages/haskell.scm (ghc-either): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
87129984ca
gnu: Add ghc-monadrandom.
...
* gnu/packages/haskell.scm (ghc-monadrandom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
4562c8c894
gnu: Add ghc-contravariant-extras.
...
* gnu/packages/haskell.scm (ghc-contravariant-extras): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
e329bacb85
gnu: Add ghc-tuple-th.
...
* gnu/packages/haskell.scm (ghc-tuple-th): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
ac4cb8fd7a
gnu: Add ghc-base-prelude.
...
* gnu/packages/haskell.scm (ghc-base-prelude): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
rsiddharth
371ad40c84
gnu: Add ghc-chunked-data.
...
* gnu/packages/haskell.scm (ghc-chunked-data): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
rsiddharth
0c7172848e
gnu: Add ghc-statistics.
...
* gnu/packages/haskell.scm (ghc-statistics): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
rsiddharth
8184b0f98c
gnu: ghc-base-orphans: Update to 0.6.
...
* gnu/packages/haskell.scm (ghc-base-orphans): Update to 0.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
rsiddharth
608bf276d7
gnu: Add ghc-monad-par.
...
* gnu/packages/haskell.scm (ghc-monad-par): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
rsiddharth
f978e2ac20
gnu: Add ghc-abstract-deque.
...
* gnu/packages/haskell.scm (ghc-abstract-deque): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
rsiddharth
59551881b1
gnu: Add ghc-monad-par-extras.
...
* gnu/packages/haskell.scm (ghc-monad-par-extras): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
rsiddharth
97b26920a8
gnu: Add ghc-abstract-par.
...
* gnu/packages/haskell.scm (ghc-abstract-par): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
rsiddharth
e0195ea875
gnu: Add ghc-test-framework-th.
...
* gnu/packages/haskell.scm (ghc-test-framework-th): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
rsiddharth
897d4f2820
gnu: Add ghc-language-haskell-extract.
...
* gnu/packages/haskell.scm
(ghc-language-haskell-extract): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
rsiddharth
30aede1b6f
gnu: Add ghc-vector-algorithms.
...
* gnu/packages/haskell.scm (ghc-vector-algorithms): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
rsiddharth
1a2a247bce
gnu: Add ghc-mwc-random.
...
* gnu/packages/haskell.scm (ghc-mwc-random): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
rsiddharth
a51ba89774
gnu: Add ghc-math-functions.
...
* gnu/packages/haskell.scm (ghc-math-functions): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
rsiddharth
bdd7e3950f
gnu: Add ghc-erf.
...
* gnu/packages/haskell.scm (ghc-erf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
rsiddharth
c1274a0b79
gnu: Add ghc-vector-th-unbox.
...
* gnu/packages/haskell.scm (ghc-vector-th-unbox): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
rsiddharth
78d8b8f36a
gnu: Add ghc-errors.
...
* gnu/packages/haskell.scm (ghc-errors): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:13 -07:00
Marius Bakke
ef7dd2e259
gnu: python-chardet: Fix PyPi download location.
...
This is a followup to a54cb3ce1f
.
* gnu/packages/python.scm (python-chardet)[source](uri): Use PYPI-URI.
2017-10-22 23:32:17 +02:00
Marius Bakke
60e29339d8
gnu: glibc: Fix CVE-2017-15670, CVE-2017-15671.
...
* gnu/packages/patches/glibc-CVE-2017-15670-15671.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc/fixed): New variable.
(glibc-2.24, glibc-2.23, glibc-2.22)[source](patches): Add
'glibc-CVE-2017-15670-15671.patch'.
2017-10-22 23:13:09 +02:00
Ricardo Wurmus
65fc5bf07d
gnu: faust-2: Update to 2.1.0.
...
* gnu/packages/audio.scm (faust-2): Update to 2.1.0.
[source]: Fetch sources via git.
[arguments]: Add phase "fix-permissions".
2017-10-22 21:25:28 +02:00
Marius Bakke
25669275a1
gnu: irssi: Update to 1.0.5 [security fixes].
...
Fixes CVE-2017-15228, CVE-2017-15227, CVE-2017-15721, CVE-2017-15723 and
CVE-2017-15722. See <https://irssi.org/security/irssi_sa_2017_10.txt >.
* gnu/packages/irc.scm (irssi): Update to 1.0.5.
2017-10-22 17:24:33 +02:00
Cyril Roelandt
a54cb3ce1f
gnu: python-chardet: Update to 3.0.4.
...
* gnu/packages/python.scm (python-chardet, python2-chardet): Update to 3.0.4.
2017-10-22 17:13:19 +02:00
Cyril Roelandt
69f7f04544
gnu: python2-hypothesis: fix propagated inputs.
...
* gnu/packages/python.scm (python2-hypothesis)[propagated-inputs]: Add
python2-enum34, which was incorrectly listed among the native inputs.
2017-10-22 17:13:15 +02:00
Nicolas Goaziou
7f7fadb592
gnu: keepassxc: Update to 2.2.1.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.1.
2017-10-22 16:55:36 +02:00
宋文武
b000294ef7
gnu: qt: Set 'EffectiveSourcePaths' to 'qtbase' for submodules.
...
Fixes a regression introduced in 8075b62378
.
This allows 'linguist.pro' of 'qttools' to find 'ConfigVersion.cmake.in',
which is needed for 'Qt5LinguistToolsConfigVersion.cmake'.
Reported by Thomas Danckaert <post@thomasdanckaert.be>.
* gnu/packages/qt.scm (qtsvg)[arguments]: Set 'EffectiveSourcePaths' in
the 'configure-qmake' phase.
2017-10-22 19:37:35 +08:00
Marius Bakke
3e8daecfd8
gnu: vim: Update to 8.0.1207.
...
* gnu/packages/vim.scm (vim): Update to 8.0.1207.
2017-10-22 13:22:59 +02:00
Marius Bakke
d436c6b566
gnu: rottlog: Remove hard-coded '/usr/sbin/sendmail' reference.
...
* gnu/packages/admin.scm (rottlog)[arguments]: Add 'patch-paths' phase.
2017-10-22 13:22:59 +02:00
Marius Bakke
58f0a19c58
gnu: sddm: Fix FTBFS after Qt paths change.
...
* gnu/packages/display-managers.scm (sddm)[arguments]: Add 'fix-qml-include'
phase.
2017-10-22 13:22:59 +02:00
Ricardo Wurmus
03639d0354
gnu: Add python-editdistance.
...
* gnu/packages/textutils.scm (python-editdistance): New variable.
2017-10-22 13:19:58 +02:00
Hartmut Goebel
12a9f7be54
gnu: kservice: Fix comment (number of failing tests).
...
* gnu/packages/kde-frameweorks.scm(kservice): Fix comment.
2017-10-22 12:58:42 +02:00
Ricardo Wurmus
a00403c61c
gnu: suil: Update to 0.10.0.
...
* gnu/packages/audio.scm (suil): Update to 0.10.0.
[inputs]: Add gtk+.
[description]: Remove version numbers from supported toolkits.
2017-10-22 12:13:37 +02:00
Ricardo Wurmus
197484147a
gnu: ingen: Update to 0.0.0-2.cc4a4db33.
...
* gnu/packages/music.scm (ingen): Update to 0.0.0-2.cc4a4db33.
[inputs]: Replace lv2 with lv2-devel.
2017-10-22 12:13:37 +02:00
Ricardo Wurmus
5e30032ffb
gnu: Add lv2-devel.
...
* gnu/packages/audio.scm (lv2-devel): New variable.
2017-10-22 12:13:37 +02:00
Ricardo Wurmus
ab8f4a7067
gnu: ganv-devel: Update to 1.5.4-12f7d6b04.
...
* gnu/packages/gtk.scm (ganv-devel): Update to 1.5.4-12f7d6b04.
2017-10-22 12:13:36 +02:00
Ricardo Wurmus
a8bf6b9b9b
gnu: raul-devel: Update to 0.8.9-4db870b2b.
...
* gnu/packages/audio.scm (raul-devel): Update to 0.8.9-4db870b2b.
2017-10-22 12:13:36 +02:00
Ricardo Wurmus
e206de67b6
gnu: Add r-rgraphviz.
...
* gnu/packages/graph.scm (r-rgraphviz): New variable.
2017-10-22 12:12:42 +02:00
Ricardo Wurmus
1ab867bebb
gnu: Add r-pdist.
...
* gnu/packages/cran.scm (r-pdist): New variable.
2017-10-22 12:10:33 +02:00
Julien Lepiller
6efc999678
gnu: Update coq-interval to 3.3.0.
...
* gnu/packages/ocaml.scm (coq-interval): Update to 3.3.0.
[inputs]: Add coq-bignums.
2017-10-22 10:21:25 +02:00
Julien Lepiller
dbfb1a596a
gnu: Add coq-bignums.
...
* gnu/packages/ocaml.scm (coq-bignums): New variable.
2017-10-22 10:21:22 +02:00
Julien Lepiller
3ffd180cc5
gnu: Update coq-coquelicot to 3.0.1.
...
* gnu/packages/ocaml.scm (coq-coquelicot): Update to 3.0.1.
2017-10-22 10:21:19 +02:00
Julien Lepiller
2e331c9c43
gnu: Update coq-mathcomp to 1.6.2.
...
* gnu/packages/ocaml.scm (coq-mathcomp): Update to 1..6.2.
2017-10-22 10:21:16 +02:00
Julien Lepiller
b44f13e04c
gnu: Update coq-flocq to 2.6.0.
...
* gnu/packages/ocaml.scm (coq-flocq): Update to 2.6.0.
2017-10-22 10:21:14 +02:00
Julien Lepiller
6e4da73710
gnu: Update coq to 8.7.0.
...
* gnu/packages/ocaml.scm (coq): Update to 8.7.0.
[build-system]: Use ocaml-build-system.
[inputs]: Add python-2.
[arguments]: Disable two failing tests.
2017-10-22 10:21:11 +02:00
Julien Lepiller
07b4cd3a48
gnu: camlp5: install META file.
...
* gnu/packages/ocaml.scm (camlp5) [phases]: New install-meta phase.
2017-10-22 10:20:50 +02:00
Marius Bakke
3d679ab1e5
gnu: lame: Update to 3.100.
...
* gnu/packages/mp3.scm (lame): Update to 3.100.
[source]: Don't hard-code version.
2017-10-22 00:39:26 +02:00
Marius Bakke
28d0b52164
gnu: python-pyqt: Update to 5.9.
...
* gnu/packages/qt.scm (python-pyqt): Update to 5.9.
2017-10-21 22:38:55 +02:00
Marius Bakke
079e679219
gnu: python-sip: Update to 4.19.3.
...
* gnu/packages/qt.scm (python-sip): Update to 4.19.3.
2017-10-21 22:38:55 +02:00
Tobias Geerinckx-Rice
a4194d1684
gnu: rest: Update to 0.8.1.
...
* gnu/packages/gnome.scm (rest): Update to 0.8.1.
2017-10-21 17:43:46 +02:00
Tobias Geerinckx-Rice
4b9a65bf6e
gnu: gnome-disk-utility: Update to 3.26.1.
...
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.26.1.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin.
2017-10-21 17:43:46 +02:00
Tobias Geerinckx-Rice
b27991179e
gnu: perl-geo-ip: Update to 1.51.
...
* gnu/packages/networking.scm (perl-geo-ip): Update to 1.51.
2017-10-21 17:43:46 +02:00
Tobias Geerinckx-Rice
5713bbf157
Use HTTPS for bioconductor.org.
...
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
Kei Kebreau
82bdcfe821
gnu: schismtracker: Update to 20170910.
...
* gnu/packages/music.scm (schismtracker): Update to 20170910.
2017-10-21 09:44:28 -04:00
Maxim Cournoyer
fd75eb6cd4
gnu: Fix the hashes of mutated GitHub archives.
...
Fixes <https://bugs.gnu.org/28745 >.
* gnu/packages/audio.scm (csound): Fix hash.
* gnu/packages/engineering.scm (fritzing): Likewise.
* gnu/packages/erlang.scm (erlang): Likewise.
* gnu/packages/fonts.scm (font-google-material-design-icons): Likewise.
* gnu/packages/graphics.scm (ogre): Likewise.
* gnu/packages/java.scm (java-plexus-interpolation, antlr3): Likewise.
* gnu/packages/serialization.scm (yaml-cpp): Likewise.
* gnu/packages/version-control.scm (libgit2): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-20 22:55:51 +02:00
Leo Famulari
7827032a7c
gnu: libvirt: Fix CVE-2017-1000256.
...
* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (libvirt)[source]: Use it.
2017-10-20 15:36:43 -04:00
Leo Famulari
48f8b07082
gnu: mysql: Update to 5.7.20.
...
* gnu/packages/databases.scm (mysql): Update to 5.7.20.
2017-10-20 15:36:42 -04:00
Leo Famulari
3890df5800
gnu: webkitgtk: Update to 2.18.1.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.1.
2017-10-20 15:36:39 -04:00
Tobias Geerinckx-Rice
a6e70e1169
gnu: youtube-dl: Update to 2017.10.20.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.20.
2017-10-20 19:48:34 +02:00
Tobias Geerinckx-Rice
5a740d06b6
gnu: dovecot: Update to 2.2.33.2.
...
* gnu/packages/mail.scm (dovecot): Update to 2.2.33.2.
2017-10-20 19:48:34 +02:00
Tobias Geerinckx-Rice
fa9ac83ec4
gnu: ola: Build with protobuf@2.
...
This follows up commit dd12d4aad0
.
* gnu/packages/protobuf.scm (protobuf-2): New variable.
* gnu/packages/lighting.scm (ola)[propagated-inputs]: Use it.
2017-10-20 19:48:33 +02:00
Tobias Geerinckx-Rice
77aa706ab6
gnu: font-hack: Update to 3.000.
...
* gnu/packages/fonts.scm (font-hack): Update to 3.000.
[source]: Download from new account.
[license]: Explicitly list all licences.
2017-10-20 19:48:33 +02:00
Julien Lepiller
c812f46058
gnu: Add aegisub.
...
* gnu/packages/video.scm (aegisub): New variable.
2017-10-20 19:41:57 +02:00
Julien Lepiller
6779ae27e6
gnu: Add ffms2.
...
* gnu/packages/video.scm (aegisub): New variable.
2017-10-20 19:41:34 +02:00
Efraim Flashner
f71ce2824d
gnu: speexdsp: Fix building on aarch64-linux.
...
* gnu/packages/xiph.scm (speexdsp)[arguments]: On aarch64-linux, disable
neon optimisations.
2017-10-20 16:23:48 +03:00
Oleg Pykhalov
6df274073a
gnu: Add emacs-json-snatcher.
...
* gnu/packages/emacs.scm (emacs-json-snatcher): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-20 14:41:41 +02:00
ng0
49d3d1d937
gnu: shellcheck: Update to 0.4.6.
...
* gnu/packages/haskell.scm (shellcheck): Update to 0.4.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-20 14:41:41 +02:00
Tobias Geerinckx-Rice
3b2fa47879
gnu: dos2unix: Update to 7.4.0.
...
* gnu/packages/textutils.scm (dos2unix): Update to 7.4.0.
2017-10-20 02:16:56 +02:00
Tobias Geerinckx-Rice
6c0c175271
gnu: cowsay: Swap ‘build’ and ‘install’ phases.
...
* gnu/packages/games.scm (cowsay)[arguments]: Invoke ‘install.sh’ during the
‘install’ phase. Delete the ‘build’ phase, as there's nothing to be built.
2017-10-20 02:16:55 +02:00
Tobias Geerinckx-Rice
46ba5337c0
gnu: cowsay: Update to 3.04.
...
* gnu/packages/games.scm (cowsay): Update to 3.04.
[source]: Download from new location.
[home-page]: Point directly to the relevant page.
[description]: Correct mark-up and expand slightly.
2017-10-20 02:16:54 +02:00
Tobias Geerinckx-Rice
8cccd09d3e
gnu: colordiff: Use HTTPS home page.
...
* gnu/packages/patchutils.scm (colordiff)[home-page]: Use HTTPS.
2017-10-20 02:16:54 +02:00
Tobias Geerinckx-Rice
fc622383a7
gnu: unbound: Update to 1.6.7.
...
* gnu/packages/dns.scm (unbound): Update to 1.6.7.
2017-10-20 02:16:53 +02:00
Tobias Geerinckx-Rice
378140e591
gnu: neofetch: Update to 3.3.0.
...
* gnu/packages/admin.scm (neofetch): Update to 3.3.0.
[arguments]: Add ‘install’ phase replacement that manually invokes make.
2017-10-20 02:16:52 +02:00
Tobias Geerinckx-Rice
1e9433cf4d
gnu: qtox: Update to 1.12.1.
...
* gnu/packages/messaging.scm (qtox): Update to 1.12.1.
2017-10-20 02:16:52 +02:00
Tobias Geerinckx-Rice
57473bfc51
gnu: speedtest-cli: Update to 1.0.7.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.7.
2017-10-20 02:16:51 +02:00
Tobias Geerinckx-Rice
47b85a69c0
gnu: cppcheck: Update to 1.81.
...
* gnu/packages/check.scm (cppcheck): Update to 1.81.
2017-10-20 02:16:51 +02:00
Kei Kebreau
7f65202990
gnu: python-sge-pygame: Update source URL.
...
* gnu/packages/game-development.scm (python-sge-pygame)[source]: Update URL.
2017-10-19 18:01:37 -04:00
Leo Famulari
9ccce79910
gnu: musl: Update to 1.1.17.
...
* gnu/packages/musl.scm (musl): Update to 1.1.17.
[source]: Remove patch.
* gnu/packages/patches/musl-CVE-2016-8859.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-19 17:37:25 -04:00
Ludovic Courtès
9b396c0cab
vm: Always use GRUB/i386.
...
Fixes <https://bugs.gnu.org/28768 >.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.
* gnu/system/vm.scm (virtualized-operating-system): Override the
'bootloader' field.
2017-10-19 23:21:49 +02:00
Mark H Weaver
b11962067b
gnu: linux-libre: Update to 4.13.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.8.
(%linux-libre-hash): Update hash.
2017-10-19 15:31:47 -04:00
Mark H Weaver
7a402621ec
gnu: linux-libre@4.9: Update to 4.9.57.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.57.
2017-10-19 15:31:02 -04:00
Mark H Weaver
a7c3dfeb6c
gnu: linux-libre@4.4: Update to 4.4.93.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.93.
2017-10-19 15:30:30 -04:00
Mark H Weaver
a8401c4ef1
gnu: linux-libre@4.1: Update to 4.1.45.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.45.
Remove patch that is now included upstream.
2017-10-19 15:29:09 -04:00
Marius Bakke
8c1db4fc58
gnu: yadifa: Update to 2.2.6.
...
* gnu/packages/dns.scm (yadifa): Update to 2.2.6.
2017-10-19 21:21:01 +02:00
Marius Bakke
43dc47fa24
gnu: Add zathura-pdf-mupdf.
...
* gnu/packages/pdf.scm (zathura-pdf-mupdf): New variable.
2017-10-19 21:21:01 +02:00
Marius Bakke
513885b54e
gnu: qemu: Build with libjpeg-turbo.
...
This gets rid of a compile warning since SPICE uses libjpeg-turbo, and reduces
the closure size by 0.8MiB.
* gnu/packages/virtualization.scm (qemu)[inputs]: Replace LIBJPEG-8 with
LIBJPEG-TURBO.
2017-10-19 21:20:56 +02:00
Oleg Pykhalov
d1c11418e7
gnu: emacs: Fix Man default C header file search path.
...
* gnu/packages/emacs.scm (emacs): Make sure Man looks for C header files in
the right places.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:47 +02:00
宋文武
b79813a19a
gnu: speex: Build and install 'speexdec' and 'speexenc'.
...
* gnu/packages/xiph.scm (speex)[native-inputs]: Add 'pkg-config'.
[inputs]: Add 'speexdsp'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:44 +02:00
Andy Patterson
4ad8fbd185
gnu: virt-manager: Fix default URI check.
...
Allows virt-manager to connect to qemu://system by default.
* gnu/packages/virtualization.scm (virt-manager)[arguments]<#:phases>: Add
'fix-default-uri.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:44 +02:00
Andy Patterson
b764a9f5e0
gnu: virt-manager: Enable statistics graphing support.
...
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Add
python2-pycairo.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:44 +02:00
Andy Patterson
9a187b39b7
gnu: qemu: Add OpenGL support.
...
Enables virgl support with spice 0.13+.
* gnu/packages/virtualization.scm (qemu)[arguments]<#:configure-flags>: Add
--enable-opengl.
[inputs]: Add libdrm and libepoxy.
(qemu-minimal)[inputs]: Remove libdrm and libepoxy.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:44 +02:00
Andy Patterson
8da7f79281
gnu: virt-manager: Enable spice-gtk support.
...
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Add spice-gtk.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:43 +02:00
Andy Patterson
c44dd0d676
gnu: spice-gtk: Enable GObject introspection support.
...
Allows virt-manager to use the spice-gtk widget.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Add gobject-introspection.
[arguments]<#:configure-flags>: Add --enable-introspection.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:43 +02:00
Andy Patterson
b376ec57f9
gnu: qemu: Enable spice usb redirection support.
...
* gnu/packages/virtualization.scm (qemu)[arguments]<#:configure-flags>: New
argument.
[inputs]: Add usbredir.
(qemu-minimal)[arguments]<#:configure-flags>: Restrict them even when they are
set by qemu.
[inputs]: Remove usbredir.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-19 12:17:43 +02:00
Ricardo Wurmus
ad3c61fcd3
gnu: python-hy: Update to 0.13.0.
...
* gnu/packages/python.scm (python-hy): Update to 0.13.0.
2017-10-19 01:37:52 +02:00
ng0
909f02dd70
gnu: Order module imports in (gnu packages mate) alphabetically.
...
* gnu/packages/mate.scm: Order module imports alphabetically.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-19 01:22:18 +02:00
Christopher Allan Webber
0ff4425cea
gnu: Add dirvish.
...
* gnu/packages/backup.scm (dirvish): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-19 01:14:28 +02:00
Christopher Allan Webber
a1777c77f0
gnu: Add perl-libtime-period.
...
* gnu/packages/perl.scm (perl-libtime-period): New variable.
2017-10-19 01:13:40 +02:00
Christopher Allan Webber
7f926760ed
gnu: Add perl-libtime-parsedate.
...
* gnu/packages/perl.scm (perl-libtime-parsedate): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-19 01:06:53 +02:00
Tobias Geerinckx-Rice
9d8796a516
Revert "gnu: python-pyatspi: Update to 2.26.0."
...
This reverts commit 629f33e233
, which breaks
orca@3.26.0.
2017-10-18 23:58:08 +02:00
Ricardo Wurmus
c0770feedd
gnu: f-seq: Fix location of commons-cli.jar.
...
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Fix location of
commons-cli.jar in the wrapper script.
2017-10-18 23:54:16 +02:00
Tobias Geerinckx-Rice
39427f9042
gnu: eog-plugins: Update to 3.26.1.
...
* gnu/packages/gnome.scm (eog-plugins): Update to 3.26.1.
2017-10-18 23:25:05 +02:00
Tobias Geerinckx-Rice
0a1a93b4aa
gnu: eog: Update to 3.26.1.
...
* gnu/packages/gnome.scm (eog): Update to 3.26.1.
2017-10-18 23:25:05 +02:00
Tobias Geerinckx-Rice
629f33e233
gnu: python-pyatspi: Update to 2.26.0.
...
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.26.0.
2017-10-18 23:25:04 +02:00
Tobias Geerinckx-Rice
2a86fece22
gnu: btrfs-progs: Update to 4.13.3.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.13.3.
2017-10-18 23:25:04 +02:00
Tobias Geerinckx-Rice
3031b138f5
gnu: hplip: Update to 3.17.10.
...
* gnu/packages/cups.scm (hplip): Update to 3.17.10.
2017-10-18 23:25:04 +02:00
Ludovic Courtès
baa6790b4c
gnu: mailutils: Update to 3.3.
...
* gnu/packages/mail.scm (mailutils): Update to 3.3.
[arguments]: Rename 'pre-build' phase to 'prepare-test-suite', and move
after 'check'. Set 'HOME', and create ~/.mh_profile.
2017-10-18 23:22:19 +02:00
Ludovic Courtès
8cb537acbc
gnu: perl-crypt-random-source: Use 'perl-license'.
...
* gnu/packages/crypto.scm (perl-crypt-random-source)[license]: Change to
LICENSE:PERL-LICENSE.
2017-10-18 23:22:19 +02:00
Stefan Reichör
ef5c40aa2d
gnu: Add atool.
...
* gnu/packages/compression.scm (atool): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-18 23:08:39 +02:00
Marius Bakke
07dfc89859
gnu: mupdf: Fix CVE-2017-15587.
...
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf)[source](patches): Use it.
2017-10-18 22:15:09 +02:00
Ricardo Wurmus
dc1d06ba9e
gnu: python-protobuf: Update to 3.4.0.
...
* gnu/packages/protobuf.scm (python-protobuf): Update to 3.4.0.
2017-10-18 01:49:14 +02:00
Ricardo Wurmus
bfd073319c
gnu: Add protobuf-c.
...
* gnu/packages/protobuf.scm (protobuf-c): New variable.
2017-10-18 01:49:14 +02:00
Ricardo Wurmus
dd12d4aad0
gnu: protobuf: Update to 3.4.1.
...
* gnu/packages/protobuf.scm (protobuf): Update to 3.4.1.
2017-10-18 01:49:14 +02:00
Marius Bakke
b2850fd170
gnu: nginx: Update to 1.12.2.
...
* gnu/packages/web.scm (nginx): Update to 1.12.2.
2017-10-17 21:05:54 +02:00
Marius Bakke
790d33c3bb
gnu: rofi: Update to 1.4.2.
...
* gnu/packages/xdisorg.scm (rofi): Update to 1.4.2.
2017-10-17 21:05:54 +02:00