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Author SHA1 Message Date
Ludovic Courtès 248871e006
build-system/gnu: Fix typo. 
* guix/build/gnu-build-system.scm (dump-file-contents): Fix typo in
'string-pad' argument.
 2018-03-20 17:01:41 +01:00
Kei Kebreau f812145e3e
gnu: ruby-sanitize: Update to 4.6.3. 
This fixes CVE-2018-3740.

* gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.
 2018-03-20 11:20:33 -04:00
宋文武 32745b71e1
gnu: cdogs-sdl: Update to commit bab20313. 
Fixes <https://bugs.gnu.org/30623>.

* gnu/packages/games.scm (cdogs-sdl): Update to commit
bab2031369b9ea2dbeb7eedbde10a43dd8ca83db.
[source]: Use git-fetch.
 2018-03-20 22:33:18 +08:00
Sahithi Yarlagadda c56739df6b
gnu: Add r-dyn. 
* gnu/packages/cran.scm (r-dyn): New variable.
 2018-03-20 15:00:52 +01:00
Ricardo Wurmus 4f1e4f33a0
gnu: pigx-bsseq: Update to 0.0.8. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
 2018-03-20 14:56:44 +01:00
Marius Bakke dc7e07c9b9
Merge branch 'staging' 2018-03-20 14:13:05 +01:00
Ludovic Courtès 88b87c352f
build-system/gnu: Dump test suite logs upon 'check' failure. 
Suggested by Mark H Weaver <mhw@netris.org>.

* guix/build/gnu-build-system.scm (dump-file-contents): New procedure.
(%test-suite-log-regexp): New variable.
(check): Add #:test-suite-log-regexp.  Catch 'invoke-error?' and call
'dump-file-contents' upon error.
 2018-03-20 13:29:37 +01:00
Ricardo Wurmus 616446ffbf
gnu: pigx-rnaseq: Update to 0.0.3. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3.
[inputs]: Add gzip.
 2018-03-20 12:20:51 +01:00
Marius Bakke 4735610ee3
gnu: poppler: Update to 0.63.0. 
* gnu/packages/pdf.scm (poppler): Update to 0.63.0.
 2018-03-20 11:57:26 +01:00
Marius Bakke 019c0eda94
gnu: fontconfig: Update to 2.13.0. 
* gnu/packages/patches/fontconfig-remove-debug-printf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/fontutils.scm (fontconfig): Update to 2.13.0.
[source](patches): Remove.
[propagated-inputs]: Add UTIL-LINUX.
 2018-03-20 11:57:25 +01:00
Marius Bakke 7428581f8d
gnu: freetype: Update to 2.9. 
* gnu/packages/fontutils.scm (freetype): Update to 2.9.
 2018-03-20 11:57:25 +01:00
Ricardo Wurmus e35924865e
Revert "gnu: wayland: Disable failing tests." 
This reverts commit e923cee1b9.
 2018-03-20 11:47:00 +01:00
Mark H Weaver 647888845c
Merge branch 'master' into core-updates 2018-03-20 00:49:05 -04:00
Tobias Geerinckx-Rice c657716ede
gnu: dnsmasq: Fix description typos. 
* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.
 2018-03-20 02:03:52 +01:00
Tobias Geerinckx-Rice 4e6c51d4eb
gnu: dnsmasq: Update to 2.79. 
* gnu/packages/dns.scm (dnsmasq): Update to 2.79.
 2018-03-20 02:03:52 +01:00
Marius Bakke a3e2b72ca9
gnu: certbot: Update to 0.22.1. 
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.
 2018-03-20 01:40:07 +01:00
Marius Bakke 818e6d9704
gnu: python-cryptography: Update to 2.2. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.
 2018-03-20 01:25:10 +01:00
Marius Bakke c9838530d3
gnu: imlib2: Update to 1.5.1. 
* gnu/packages/image.scm (imlib2): Update to 1.5.1.
 2018-03-20 01:24:48 +01:00
Marius Bakke 264cb77646
gnu: imagemagick: Update to 6.9.9-39. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.
 2018-03-20 01:09:16 +01:00
Marius Bakke 0d729c5b14
gnu: zziplib: Correct license. 
* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.
 2018-03-20 01:06:43 +01:00
Marius Bakke 3f986ff657
gnu: zziplib: Update to 0.13.69. 
* gnu/packages/compression.scm (zziplib): Update to 0.13.69.
[home-page]: Use new GitHub home.
[source](uri): Adjust accordingly.
[arguments]: Remove.
 2018-03-20 00:56:04 +01:00
Marius Bakke 712be306a8
gnu: rofi: Update to 1.5.1. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.
 2018-03-20 00:34:00 +01:00
Marius Bakke dbc75dadb5
Revert "Revert "gnu: patchelf: Update argument phase."" 
This change only affects armhf, which doesn't use PatchELF.  My bad!

This reverts commit b1d096f869.
 2018-03-20 00:20:59 +01:00
Marius Bakke 061f204dcd
Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case." 
This requires adding (guix utils) to the build inputs, and causes too many
rebuilds for now.

This reverts commit 24a2e9172a.
 2018-03-20 00:06:50 +01:00
Marius Bakke b1d096f869
Revert "gnu: patchelf: Update argument phase." 
It causes too many rebuilds this late in the 'staging' cycle.

This reverts commit c1d1cd817c.
 2018-03-20 00:06:34 +01:00
Leo Famulari d41ad1d553
gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490]. 
* gnu/packages/web.scm (uwsgi): Update to 2.0.17.
[source]: Use HTTPS URL.
 2018-03-19 18:56:26 -04:00
Ludovic Courtès cfbf6de18c
gnu: mcron: Update to 1.1 and deprecate "mcron2". 
* gnu/packages/guile.scm (mcron): Update to 1.1.
[native-inputs]: Add TZDATA-FOR-TESTS.
[arguments]: New field.
(mcron2): Define using 'deprecated-package'.
* gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'.
* doc/guix.texi (Scheduled Job Execution): Likewise.
* gnu/tests/base.scm (%mcron-os): Remove comment about mcron2.
 2018-03-19 23:19:49 +01:00
Mark H Weaver f88028c432
gnu: linux-libre: Update to 4.15.11. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11.
(%linux-libre-hash): Update hash.
 2018-03-19 18:02:29 -04:00
Mark H Weaver dd07a549d0
gnu: linux-libre@4.14: Update to 4.14.28. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28.
(%linux-libre-4.14-hash): Update hash.
 2018-03-19 18:01:49 -04:00
Mark H Weaver cc367c7c7a
gnu: linux-libre@4.9: Update to 4.9.88. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88.
 2018-03-19 18:01:12 -04:00
Mark H Weaver 75abeb73e3
gnu: linux-libre@4.4: Update to 4.4.122. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122.
 2018-03-19 18:00:37 -04:00
Tobias Geerinckx-Rice 9010123565
gnu: weechat: Update to 2.1. 
* gnu/packages/irc.scm (weechat): Update to 2.1.
 2018-03-19 22:26:41 +01:00
Tobias Geerinckx-Rice 1d9b041c2e
gnu: perl-xml-compile-soap: Update to 3.24. 
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.
 2018-03-19 22:26:41 +01:00
Tobias Geerinckx-Rice fa3fff430b
gnu: perl-xml-simple: Update to 2.25. 
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.
 2018-03-19 22:26:40 +01:00
Tobias Geerinckx-Rice 8d0d14479d
gnu: perl-math-random-secure: Fix typo. 
* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix
the spelling of ‘millennia’.
 2018-03-19 22:26:30 +01:00
Efraim Flashner 24a2e9172a
build-system/meson: Use 'target-arm32?' for armhf-linux case. 
* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux
detection with 'target-arm32?' macro.
 2018-03-19 22:07:37 +02:00
Ricardo Wurmus 9dbdc830f6
gnu: pigx-bsseq: Update to 0.0.7. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.
 2018-03-19 21:06:51 +01:00
Ricardo Wurmus 096589035e
gnu: bismark: Fix references to gunzip. 
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
 2018-03-19 21:06:51 +01:00
Ricardo Wurmus 51237011bf
gnu: pigx-scrnaseq: Update to 0.0.3. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3.
[inputs]: Add coreutils and perl.
 2018-03-19 21:06:50 +01:00
Efraim Flashner 203631d9ad
patchelf: Use 'https' for source uri. 
* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
 2018-03-19 21:48:43 +02:00
Efraim Flashner 05666fb8db
patchelf: Use 'https' for source uri. 
* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
 2018-03-19 21:48:06 +02:00
Efraim Flashner c1d1cd817c
gnu: patchelf: Update argument phase. 
* gnu/packages/elf.scm (patchelf)[arguments]: Use 'modify-phases'
syntax.  Replace 'system*' with 'invoke'.
 2018-03-19 21:48:06 +02:00
Efraim Flashner c24f1f1614
gnu: patchelf: Use 'target-arm32?' for armhf-linux case. 
* gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection
logic with 'target-arm32?' macro.
[arguments]: Same.
 2018-03-19 21:48:03 +02:00
Leo Famulari 9687d4042a
gnu: python-paramiko: Update to 2.1.5. 
* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko):
Update to 2.1.5.
 2018-03-19 14:34:55 -04:00
Tobias Geerinckx-Rice fe15613cdf
gnu: perl-net-ssleay: Update to 1.85. 
* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.85.
 2018-03-19 19:27:41 +01:00
Tobias Geerinckx-Rice b824534bb8
gnu: perl-http-message: Update to 6.15. 
* gnu/packages/web.scm (perl-http-message): Update to 6.15.
[source]: Update URI.
[native-inputs]: Add perl-try-tiny.
 2018-03-19 19:27:40 +01:00
Tobias Geerinckx-Rice a768e41523
gnu: r-minimal, r: Update to 3.4.4. 
There seem to be no dependency updates as far as I could find.

* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.
 2018-03-19 19:22:32 +01:00
Leo Famulari 6969ad0edd
gnu: python-pynacl: Update to 1.2.0. 
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0.
[native-inputs]: Add python-hypothesis.
 2018-03-19 12:37:51 -04:00
Ricardo Wurmus d8f08c85ad
gnu: pigx: Update to 0.0.2. 
* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.
 2018-03-19 16:55:43 +01:00
Ricardo Wurmus d93a1c276b
gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1. 
* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
 2018-03-19 16:55:43 +01:00