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Author SHA1 Message Date
Ricardo Wurmus
6c6d051322
gnu: r-rmpfr: Update to 0.8-1. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1.
[inputs]: Add gmp.
[native-inputs]: Add pkg-config.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
6378827a71
gnu: r-gmp: Update to 0.5-13.6. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
e99caf8a4c
gnu: r-afex: Update to 0.26-0. 
* gnu/packages/cran.scm (r-afex): Update to 0.26-0.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
5b959414e0
gnu: r-gh: Update to 1.1.0. 
* gnu/packages/cran.scm (r-gh): Update to 1.1.0.
[propagated-inputs]: Add r-cli.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
4a7e857617
gnu: r-sjplot: Update to 2.8.2. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.2.
[propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr,
r-modelr, and r-psych.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
a4bc993f7b
gnu: r-effectsize: Update to 0.1.1. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.1.1.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
d56026a85f
gnu: r-performance: Update to 0.4.3. 
* gnu/packages/cran.scm (r-performance): Update to 0.4.3.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
5c61d3e5b5
gnu: r-bayestestr: Update to 0.5.1. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.1.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
3575a16b7f
gnu: r-sjstats: Update to 0.17.8. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.8.
[propagated-inputs]: Add r-effectsize.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
6cdd12542a
gnu: r-survey: Update to 3.37. 
* gnu/packages/cran.scm (r-survey): Update to 3.37.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
a6494403b3
gnu: r-magick: Update to 2.3. 
* gnu/packages/cran.scm (r-magick): Update to 2.3.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
a82e617bf8
gnu: r-sjlabelled: Update to 1.1.2. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.2.
[propagated-inputs]: Remove r-magrittr, r-purrr, r-rlang, and r-tidyselect.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
8958b37eb8
gnu: r-factominer: Update to 2.1. 
* gnu/packages/cran.scm (r-factominer): Update to 2.1.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
addf7bc2b1
gnu: r-leaps: Update to 3.1. 
* gnu/packages/cran.scm (r-leaps): Update to 3.1.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
c23b40335d
gnu: r-vctrs: Update to 0.2.2. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.2.
[propagated-inputs]: Remove r-backports and r-zeallot.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
8a8e296406
gnu: r-tsp: Update to 1.1-8. 
* gnu/packages/cran.scm (r-tsp): Update to 1.1-8.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
485b9cea5a
gnu: r-xts: Update to 0.12-0. 
* gnu/packages/cran.scm (r-xts): Update to 0.12-0.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
e5b38da1cc
gnu: r-broom: Update to 0.5.4. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.4.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
fde9fc4871
gnu: r-lpsolve: Update to 5.6.15. 
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.15.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
0be161720c
gnu: r-prettyunits: Update to 1.1.1. 
* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.1.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
6e27edda2c
gnu: r-rgooglemaps: Update to 1.4.5.2. 
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.2.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
f0eecc6be9
gnu: r-callr: Update to 3.4.1. 
* gnu/packages/cran.scm (r-callr): Update to 3.4.1.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
c6b4b4e719
gnu: r-diversitree: Update to 0.9-13. 
* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-13.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
fd6412cd2c
gnu: r-metap: Update to 1.3. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
 2020-01-27 16:33:27 +01:00
Ludovic Courtès
5e61de2421
gnu: python-testpath: Remove incorrect #:imported-modules. 
Fixes <https://bugs.gnu.org/39298>.
Reported by Clément Lassieur <clement@lassieur.org>
and Ricardo Wurmus <rekado@elephly.net>.

This pacakge would import (srfi srfi-1) from the host Guile, leading to
build failures when the host Guile is 3.0.

* gnu/packages/check.scm (python-testpath)[arguments]: Remove incorrect
 #:imported-modules.
 2020-01-27 14:18:12 +01:00
David Wilson
1f7f16dced
gnu: emacs-org-make-toc: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.4
 2020-01-27 04:42:14 -08:00
宋文武
4a0e49279d
gnu: public-inbox: Enable support for background HTTP/NNTP daemons. 
* gnu/packages/mail.scm (public-inbox)[inputs]: Add perl-net-server.
 2020-01-27 17:38:49 +08:00
Efraim Flashner
71ffa528ef
gnu: keepassxc: Update to 2.5.3. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.5.3.
 2020-01-27 10:37:35 +02:00
宋文武
47ea2ad196
gnu: s6: Install documentation. 
* gnu/packages/skarnet.scm (s6)[arguments]: Add 'install-doc' phase.
 2020-01-27 11:41:45 +08:00
Julien Lepiller
87858bc526
gnu: ocaml: Switch to ocaml 4.09 by default. 
Bap and earley cannot be updated as they do not support 4.09 yet. Bap requires
the janestreet packages, which cannot be upgraded as no version supports
4.09 and 4.07 at the same time. Moreover, newer versions of the
janestreet packages have a different dependency graph, which will
require a whole new set of packages. We cannot simply use
package-with-ocaml4.07 on them.

* gnu/packages/ocaml.scm (ocaml-sqlite3, ocaml-ppx-tools, ocaml-gen)
(ocaml-sedlex, ocaml-pcre, ocaml-expect, ocaml-ezjsonm, ocaml-uri)
(ocaml-piqilib, ocaml-piqi, ocaml-charinfo-width, ocaml-zed)
(ocaml-lambda-term, ocaml-utop, ocaml-ppx-inline-test, ocaml-earley)
(ocaml-merlin, ocaml-gsl, ocaml-gsl-1, ocaml-sexplib0, ocaml-parsexp)
(ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppxlib, ocaml-ppx-compare)
(ocaml-fieldslib, ocaml-variantslib, ocaml-ppx-fields-conv)
(ocaml-ppx-sexp-conv, ocaml-ppx-variants-conv, ocaml-ppx-custom-printf)
(ocaml-bin-prot, ocaml-ppx-hash, ocaml-ppx-enumerate, ocaml-ppx-bench)
(ocaml-ppx-here, ocaml-ppx-typerep, ocaml-ppx-sexp-value)
(ocaml-ppx-sexp-message, ocaml-ppx-pipebang, ocaml-ppx-optional)
(ocaml-ppx-optcomp, ocaml-ppx-fail, ocaml-ppx-let, ocaml-ppx-assert)
(ocaml-ppx-expect, ocaml-ppx-js-style, ocaml-ppx-typerep-conv)
(ocaml-ppx-base, ocaml-ppx-bin-prot, ocaml-ppx-jane)
(ocaml-splittable-random, ocaml-configurator, ocaml-spawn, ocaml-core)
(ocaml-core-kernel, ocaml-odoc, ocaml-fftw3, ocaml-lacaml): Rename to ...
(ocaml4.07-sqlite3, ocaml4.07-ppx-tools, ocaml4.07-gen, ocaml4.07-sedlex)
(ocaml4.07-pcre, ocaml4.07-expect, ocaml4.07-ezjsonm, ocaml4.07-uri)
(ocaml4.07-piqilib, ocaml4.07-piqi, ocaml4.07-charinfo-width)
(ocaml4.07-zed, ocaml4.07-lambda-term, ocaml4.07-utop)
(ocaml4.07-ppx-inline-test, ocaml4.07-earley, ocaml4.07-merlin)
(ocaml4.07-gsl, ocaml4.07-gsl-1, ocaml4.07-sexplib0, ocaml4.07-parsexp)
(ocaml4.07-sexplib, ocaml4.07-base, ocaml4.07-stdio, ocaml4.07-ppxlib)
(ocaml4.07-ppx-compare, ocaml4.07-fieldslib, ocaml4.07-variantslib)
(ocaml4.07-ppx-fields-conv, ocaml4.07-ppx-sexp-conv)
(ocaml4.07-ppx-variants-conv, ocaml4.07-ppx-custom-printf)
(ocaml4.07-bin-prot, ocaml4.07-ppx-hash, ocaml4.07-ppx-enumerate)
(ocaml4.07-ppx-bench, ocaml4.07-ppx-here, ocaml4.07-ppx-typerep)
(ocaml4.07-ppx-sexp-value, ocaml4.07-ppx-sexp-message)
(ocaml4.07-ppx-pipebang, ocaml4.07-ppx-optional, ocaml4.07-ppx-optcomp)
(ocaml4.07-ppx-fail, ocaml4.07-ppx-let, ocaml4.07-ppx-assert)
(ocaml4.07-ppx-expect, ocaml4.07-ppx-js-style)
(ocaml4.07-ppx-typerep-conv, ocaml4.07-ppx-base, ocaml4.07-ppx-bin-prot)
(ocaml4.07-ppx-jane, ocaml4.07-splittable-random)
(ocaml4.07-configurator, ocaml4.07-spawn, ocaml4.07-core)
(ocaml4.07-core-kernel, ocaml4.07-odoc, ocaml4.07-fftw3)
(ocaml4.07-lacaml): ... to this and use ocaml 4.07.
(bap, unison): Use ocaml-4.07.
* gnu/packages/bioinformatics.scm (pplacer): Use ocaml-4.07.
 2020-01-27 03:56:06 +01:00
Julien Lepiller
1e8da4cdef
guix: ocaml: Also replace dune when relevant in package-with-explicit-ocaml. 
* guix/build-system/ocaml.scm (package-with-explicit-ocaml): Take a dune
argument and add it to transformed packages when relevant.
 2020-01-27 03:55:52 +01:00
Julien Lepiller
0ccd9463ec
gnu: Add ocaml4.07-dune. 
* gnu/packages/ocaml.scm (ocaml4.07-dune): New variable.
 2020-01-27 03:55:42 +01:00
Julien Lepiller
73c26d5729
gnu: Add ocaml4.07-lablgtk. 
* gnu/packages/ocaml.scm (ocaml4.07-lablgtk): New variable.
(lablgtk)[properties]: Add variant.
 2020-01-27 03:55:27 +01:00
Julien Lepiller
7a4780ce9d
gnu: ocambuild: Update to 0.14.0. 
* gnu/packages/ocaml.scm (ocamlbuild): Update to 0.14.0.
[build-system]: Use ocaml-build-system.
 2020-01-27 03:54:52 +01:00
Kei Kebreau
1ef71f5225
gnu: pcsxr: Wrap with GSETTINGS_SCHEMA_DIR path variable. 
Without setting this path variable, gtk+ must be installed in the user's
profile for pcsxr's GUI to work.

* gnu/packages/emulators.scm (pcsxr)[arguments]: Add 'wrap-program' phase and
return #t from 'cd-subdir' and 'fix-cdio-lookup' phases.
 2020-01-26 19:12:22 -05:00
Marius Bakke
4144eb195c
gnu: sicp: Remove unused module import. 
* gnu/packages/scheme.scm (sicp)[arguments]: Do not import (srfi srfi-1).
 2020-01-27 00:47:57 +01:00
Nicolas Goaziou
2e4ea249a1
gnu: emacs-org-contrib: Update to 20200126. 
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20200126.
 2020-01-27 00:02:34 +01:00
Nicolas Goaziou
406c7bc6cd
gnu: emacs-org: Update to 9.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.2.
 2020-01-26 23:58:23 +01:00
Nicolas Goaziou
753c9b7c19
gnu: emacs-modus-themes: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.4.0.
 2020-01-26 23:56:25 +01:00
Marius Bakke
435c2c39aa
Revert "gnu: Add python-pathtools." 
This package was already in Guix since commit
dbcef44a0b.

This reverts commit 87435943d1.
 2020-01-26 23:39:35 +01:00
Marius Bakke
fed17bcad9
Revert "gnu: Add python-iocapture." 
This package was already in Guix since commit
dbcef44a0b.

This reverts commit 2cb4ee2787.
 2020-01-26 23:39:35 +01:00
Marius Bakke
3293b1bce9
Revert "gnu: Add python-argh." 
This package was already in Guix since commit
db6bd842aa.

This reverts commit fb4db07467.
 2020-01-26 23:39:35 +01:00
Alexander Krotov
7ff169d04f
guix-install.sh: Correctly treat empty or unset $XDG_DATA_DIRS 
If $XDG_DATA_DIRS is unset, default value of "/usr/local/share:/usr/share"
is used according to XDG Base Directory Specification. However,
/etc/profile.d/guix.sh treats this value as empty list when appending its
own directory, so after installing Guix on the system, launchers such
as Rofi stop searching for .desktop files in /usr/share/applications/
and can't launch applications other than those installed with Guix.

This patch fixes the bug in generated /etc/profile.d/guix.sh

* etc/guix-install.sh (sys_create_init_profile): Use default value of
  /usr/local/share:/usr/share/ before appending if $XDG_DATA_DIRS is not
  set.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-01-26 23:21:39 +01:00
Prafulla Giri
29ba58c0ef
guix-install.sh: Create /etc/profile.d if it does not exist 
* etc/guix-install.sh (sys_create_init_profile): Add code to create
/etc/profile.d if it somehow does not exist; the function still carries
on because it is possible that /etc/profile is still configured to read
the *.sh files from /etc/profile.d, if they exist.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-01-26 23:21:39 +01:00
Prafulla Giri
5c03516a6b
guix-install.sh: Export INFOPATH to contain updated guix info-pages 
* etc/guix-install.sh (sys_create_init_profile): Export INFOPATH to include
the updated info-pages from ~/.config/guix/current/share/info.  This also makes
sure that both /usr/bin/info and $GUIX_PROFILE/bin/info can read guix info pages
without throwing "no menu item 'guix' in node dir(Top)" error.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-01-26 23:21:39 +01:00
Ludovic Courtès
98dd9ff800
gnu: mailutils: Add "guile3.0-mailutils" variant. 
* gnu/packages/mail.scm (mailutils)[arguments]: In #:configure-flags,
replace hard-coded "2.2" with the 'version-major+minor' of the "guile"
input.
(guile3.0-mailutils): New variable.
 2020-01-26 23:21:38 +01:00
Joseph LaFreniere
3d11114d22
gnu: Add emacs-vterm. 
* gnu/packages/emacs-xyz.scm (emacs-vterm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-01-26 23:21:38 +01:00
Mark H Weaver
af46f6e40a
gnu: linux-libre: Update to 5.4.15. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.15.
(linux-libre-5.4-pristine-source): Update hash.
 2020-01-26 13:33:49 -05:00
Nicolas Goaziou
fb85b967f6
gnu: Add missing modules. 
* gnu/packages/text-editors.scm: Add missing modules.
 2020-01-26 19:25:19 +01:00
Nicolas Goaziou
3fad9a6923
gnu: Add qemacs. 
* gnu/packages/text-editors.scm (qemacs): New variable.
 2020-01-26 19:24:38 +01:00