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122873 commits

Author SHA1 Message Date
Ricardo Wurmus 00d8ba65aa
gnu: r-affy: Update to 1.78.2.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus d3bebefa9b
gnu: r-dmrcate: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.1.
[propagated-inputs]: Add r-biomart.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus e868377a7d
gnu: r-densvis: Update to 1.10.3.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.3.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus d0f065d0b1
gnu: r-delayedarray: Update to 0.26.7.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.7.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 1119ecbd79
gnu: r-bambu: Update to 3.2.6.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.6.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 6c502065dc
gnu: r-anvil: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.12.4.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 17c8517035
gnu: r-cytolib: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.12.1.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus ad05356b84
gnu: r-enrichplot: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.1.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 607214f953
gnu: r-lefser: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.10.1.
[propagated-inputs]: Add r-s4vectors.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 88f973a21b
gnu: r-rtracklayer: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.1.
[inputs]: Add openssl.
2023-08-28 22:15:46 +02:00
Nicolas Goaziou ea88bef3e0
gnu: texlive-texdoc: Fix script.
* gnu/packages/tex.scm (texlive-texdoc)[arguments]<#phases>: Prevent
a warning, and, more importantly, an error when using `texdoc' command.

Reported-by: Emmanuel Beffara <manu@beffara.org>
2023-08-28 19:50:17 +02:00
Ricardo Wurmus c8a642de9a
import-utils: Do not include punctuation when wrapping in @code{}.
* guix/import/utils.scm (beautify-description): Exclude punctuation.
* tests/import-utils.scm: Add new test.
2023-08-28 19:08:38 +02:00
Ricardo Wurmus b4c7fe02ae
gnu: Add r-lea.
* gnu/packages/bioconductor.scm (r-lea): New variable.
2023-08-28 18:06:50 +02:00
Ricardo Wurmus 28e9d08364
gnu: Add r-sesame.
* gnu/packages/bioconductor.scm (r-sesame): New variable.
2023-08-28 18:03:46 +02:00
Ricardo Wurmus 6b1946d2e2
gnu: Add r-sesamedata.
* gnu/packages/bioconductor.scm (r-sesamedata): New variable.
2023-08-28 18:03:28 +02:00
Ricardo Wurmus 72eecbffc6
gnu: Add r-enrichedheatmap.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): New variable.
2023-08-28 18:00:03 +02:00
Ricardo Wurmus 46e267c336
gnu: Add r-rdisop.
* gnu/packages/bioconductor.scm (r-rdisop): New variable.
2023-08-28 18:00:03 +02:00
Ricardo Wurmus 67f4383769
gnu: Add r-derfinder.
* gnu/packages/bioconductor.scm (r-derfinder): New variable.
2023-08-28 18:00:03 +02:00
Ricardo Wurmus 71a7dcb268
gnu: Add r-sangerseqr.
* gnu/packages/bioconductor.scm (r-sangerseqr): New variable.
2023-08-28 17:59:37 +02:00
Ricardo Wurmus 3e203183f8
gnu: Add r-rtcga.
* gnu/packages/bioconductor.scm (r-rtcga): New variable.
2023-08-28 17:59:37 +02:00
Ricardo Wurmus 3886a2b8b5
gnu: Add r-arrayqualitymetrics.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): New variable.
2023-08-28 17:21:36 +02:00
Navid Afkhami 3350e871a8
gnu: Add r-classdiscovery.
* gnu/packages/bioconductor.scm (r-classdiscovery): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 99ed03843c
gnu: r-clubsandwich: Update to 0.5.10.
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.10.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 00cb411a0c
gnu: r-deoptimr: Update to 1.1-1.
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-1.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 8016c913b3
gnu: r-sfsmisc: Update to 1.1-16.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-16.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 47757d9f2b
gnu: r-biased-urn: Update to 2.0.11.
* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.11.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 6ba6b8da32
gnu: r-purrr: Update to 1.0.2.
* gnu/packages/statistics.scm (r-purrr): Update to 1.0.2.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 9692aa657b
gnu: r-viridis: Update to 0.6.4.
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.4.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 53fd472591
gnu: r-mvtnorm: Update to 1.2-3.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-3.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 130eae02a6
gnu: r-glmnet: Update to 4.1-8.
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-8.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 1bed7fc281
gnu: r-rmarkdown: Update to 2.24.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.24.
[native-inputs]: Add esbuild.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus e04fd37d35
gnu: r-rcpparmadillo: Update to 0.12.6.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.1.0.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 00d19699e2
gnu: r-multitaper: Update to 1.0-17.
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-17.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 37ac27ce5d
gnu: r-markdown: Update to 1.8.
* gnu/packages/statistics.scm (r-markdown): Update to 1.8.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 68f2b8c176
gnu: r-nlme: Update to 3.1-163.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-163.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus a21ad0d56e
gnu: r-matrix: Update to 1.6-1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-1.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus fcf1a0f57c
gnu: r-zoeppritz: Update to 1.0-9.
* gnu/packages/cran.scm (r-zoeppritz): Update to 1.0-9.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 7b20fd94e8
gnu: r-keras: Update to 2.13.0.
* gnu/packages/cran.scm (r-keras): Update to 2.13.0.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus 06d2209171
gnu: r-tensorflow: Update to 2.13.0.
* gnu/packages/cran.scm (r-tensorflow): Update to 2.13.0.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus 7b6dd6a8d1
gnu: r-rgeos: Update to 0.6-4.
* gnu/packages/cran.scm (r-rgeos): Update to 0.6-4.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus 43b31ffc73
gnu: r-opencpu: Update to 2.2.11.
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.11.
[propagated-inputs]: Add r-rlang and r-vctrs.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus 96e561cb71
gnu: r-delaporte: Update to 8.2.0.
* gnu/packages/cran.scm (r-delaporte): Update to 8.2.0.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus fcc5fe4788
gnu: r-stars: Update to 0.6-3.
* gnu/packages/cran.scm (r-stars): Update to 0.6-3.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus 316c9510d5
gnu: r-readods: Update to 2.0.0.
* gnu/packages/cran.scm (r-readods): Update to 2.0.0.
[propagated-inputs]: Remove r-purrr; add r-cpp11, r-tibble, r-vctrs, and r-zip.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus d461e21ab0
gnu: r-striprtf: Update to 0.6.0.
* gnu/packages/cran.scm (r-striprtf): Update to 0.6.0.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus c920c55ab2
gnu: r-syuzhet: Update to 1.0.7.
* gnu/packages/cran.scm (r-syuzhet): Update to 1.0.7.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus 677d476f1c
gnu: r-vdiffr: Update to 1.0.6.
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.6.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus 61b03ff556
gnu: r-diversitree: Update to 0.9-19.
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-19.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus fac7e395f0
gnu: r-perm: Update to 1.0-0.4.
* gnu/packages/cran.scm (r-perm): Update to 1.0-0.4.
2023-08-28 17:08:54 +02:00
Ricardo Wurmus c34980e549
gnu: r-tidymodels: Update to 1.1.1.
* gnu/packages/cran.scm (r-tidymodels): Update to 1.1.1.
2023-08-28 17:08:53 +02:00