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Author SHA1 Message Date
Timothy Sample 54a5fd0791
build-system/haskell: Add 'extra-directories' keyword. 
See <https://bugs.gnu.org/39309>.

* guix/build-system/haskell.scm (lower): Include the transitive
propagated inputs of 'extra-directories' inputs.
(haskell-build): Add the 'extra-directories' keyword and pass it through
to the builder.
* guix/build/haskell-build-system.scm (configure): Use it to select
which inputs get passed via 'extra-include-dirs' and 'extra-lib-dirs' to
Cabal.
* gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-hmatrix,
ghc-hmatrix-gsl, ghc-hslua, ghc-iwlib, ghc-libyaml, ghc-ncurses,
ghc-openglraw, ghc-x11, ghc-x11-xft, ghc-zlib): Set 'extra-directories'.
* gnu/packages/haskell-crypto.scm (ghc-digest, ghc-hsopenssl): Likewise.
 2020-08-13 16:44:52 +02:00
Ricardo Wurmus 3f7922cbf5
haskell-build-system: register: Remove references to the doc output. 
* guix/build/haskell-build-system.scm (register): Strip references to the doc
output from the generated package config files; move the haddock files from
the "doc" output to the "lib" output.
 2020-08-12 14:45:49 +02:00
Ricardo Wurmus 75bda3c648
haskell-build-system: register: Respect lib output. 
* guix/build/haskell-build-system.scm (register): Use lib output if it exists.
 2020-08-12 14:45:49 +02:00
Ricardo Wurmus 718dc7d4a5
build-system/haskell: Add default output "static". 
* guix/build-system/haskell.scm (lower): Add OUTPUTS keyword and add the
"static" output in the common case.
(haskell-build): Set the default value for the OUTPUTS keyword to include the
"static" output.
* guix/build/haskell-build-system.scm (install): Move static libraries to the
"static" output if it exists.
 2020-08-12 14:45:48 +02:00
Ricardo Wurmus 9e5496e0ae
build-system/haskell: Configure to link with shared libraries. 
* guix/build/haskell-build-system.scm (configure): Add configure flags to
build shared libraries by default, to generate position independent code, and
to set the RUNPATH.
 2020-08-12 14:45:48 +02:00
Ricardo Wurmus 0347888a7e
build-system/haskell: Refactor configure step. 
* guix/build/haskell-build-system.scm (configure): Replace append
with quasiquotes and splicing.
 2020-08-12 14:45:48 +02:00
Ricardo Wurmus 67cb9fa235
build-system/haskell: Support parallel builds. 
* guix/build-system/haskell.scm (haskell-build): Add keyword PARALLEL-BUILD?
and pass it on to the builder.
* guix/build/haskell-build-system.scm (build): Accept keyword PARALLEL-BUILD?
and pass the number of parallel jobs to GHC.
 2020-08-12 14:45:48 +02:00
Timothy Sample 54c9b5bfd7
gnu: Add ghc-8.8. 
* gnu/packages/haskell.scm (ghc-8.8): New variable.
 2020-08-12 14:45:44 +02:00
Ricardo Wurmus 1c831f42cf
gnu: r-car: Update to 3.0-9. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-9.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus d7570fc79b
gnu: r-fit-models: Update to 0.64. 
* gnu/packages/statistics.scm (r-fit-models): Update to 0.64.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 15d4f9e109
gnu: r-rrcov: Update to 1.5-5. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.5-5.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 6cb15e098c
gnu: r-hmisc: Update to 4.4-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-1.
[propagated-inputs]: Remove r-acepack.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 1713df8e9a
gnu: r-tidyr: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.1.
[propagated-inputs]: Remove r-rcpp and r-stringi; add r-cpp11.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 06576a5bd0
gnu: r-dt: Update to 0.15. 
* gnu/packages/statistics.scm (r-dt): Update to 0.15.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 47b57ce5dc
gnu: r-xml: Update to 3.99-0.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.5.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 228a197278
gnu: r-rcpparmadillo: Update to 0.9.900.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.2.0.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 210ae7ba60
gnu: r-devtools: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.3.1.
[propagated-inputs]: Remove r-crayon, r-digest, r-glue, and r-git2r.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus c2b02b1b49
gnu: r-httr: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.2.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 81cc043322
gnu: r-data-table: Update to 1.13.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.0.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 4a791a2f6d
gnu: r-dplyr: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.1.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus b4552eba89
gnu: r-ggdendro: Update to 0.1.21. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.21.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus 284caaf505
gnu: r-bit64: Update to 4.0.2. 
* gnu/packages/statistics.scm (r-bit64): Update to 4.0.2.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus d9dc684dce
gnu: r-bit: Update to 4.0.4. 
* gnu/packages/statistics.scm (r-bit): Update to 4.0.4.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus 4ebeb5329b
gnu: r-brms: Update to 2.13.5. 
* gnu/packages/cran.scm (r-brms): Update to 2.13.5.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus b65959fa72
gnu: r-rxnat: Update to 1.0.12. 
* gnu/packages/cran.scm (r-rxnat): Update to 1.0.12.
[propagated-inputs]: Add r-dplyr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus c8ccc115a4
gnu: r-aws: Update to 2.4-3. 
* gnu/packages/cran.scm (r-aws): Update to 2.4-3.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus 8754e5b761
gnu: r-rstanarm: Update to 2.21.1. 
* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.1.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus ad53122f35
gnu: r-rstan: Update to 2.21.2. 
* gnu/packages/cran.scm (r-rstan): Update to 2.21.2.
[propagated-inputs]: Add r-withr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus f74941f7d9
gnu: r-quanteda: Update to 2.1.1. 
* gnu/packages/cran.scm (r-quanteda): Update to 2.1.1.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus 7094d92aaa
gnu: r-shinycssloaders: Update to 1.0.0. 
* gnu/packages/cran.scm (r-shinycssloaders): Update to 1.0.0.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus d222c7527d
gnu: r-adamethods: Update to 1.2.1. 
* gnu/packages/cran.scm (r-adamethods): Update to 1.2.1.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus ac6ce7bb52
gnu: r-fda: Update to 5.1.5.1. 
* gnu/packages/cran.scm (r-fda): Update to 5.1.5.1.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus eaa1cc3bb6
gnu: r-rgdal: Update to 1.5-16. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-16.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus 1f5bc20aca
gnu: r-parameters: Update to 0.8.2. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.2.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus 3ea13fd105
gnu: r-dalex: Update to 1.3.1.1. 
* gnu/packages/cran.scm (r-dalex): Update to 1.3.1.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 606dd761ac
gnu: r-ibreakdown: Update to 1.3.1. 
* gnu/packages/cran.scm (r-ibreakdown): Update to 1.3.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus a2989498a7
gnu: r-ingredients: Update to 1.3.1. 
* gnu/packages/cran.scm (r-ingredients): Update to 1.3.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 30b1b051e6
gnu: r-gbm: Update to 2.1.8. 
* gnu/packages/cran.scm (r-gbm): Update to 2.1.8.
[propagated-inputs]: Remove r-gridextra.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus fb883e0dfe
gnu: r-hierfstat: Update to 0.5-7. 
* gnu/packages/cran.scm (r-hierfstat): Update to 0.5-7.
[propagated-inputs]: Add r-gaston.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 42fdd90252
gnu: r-ibdreg: Update to 0.3.1. 
* gnu/packages/cran.scm (r-ibdreg): Update to 0.3.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 487473b26c
gnu: r-rms: Update to 6.0-1. 
* gnu/packages/cran.scm (r-rms): Update to 6.0-1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus adc4117137
gnu: r-sf: Update to 0.9-5. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-5.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 5d8ec45aec
gnu: r-deldir: Update to 0.1-28. 
* gnu/packages/cran.scm (r-deldir): Update to 0.1-28.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 36acbb1cc8
gnu: r-irkernel: Update to 1.1.1. 
* gnu/packages/cran.scm (r-irkernel): Update to 1.1.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 4283064baf
gnu: r-lavaan: Update to 0.6-7. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-7.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus e92f723188
gnu: r-compositions: Update to 2.0-0. 
* gnu/packages/cran.scm (r-compositions): Update to 2.0-0.
[propagated-inputs]: Add r-mass.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 48b55f3194
gnu: r-epi: Update to 2.41. 
* gnu/packages/cran.scm (r-epi): Update to 2.41.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 4e5445bdba
gnu: r-assertive: Update to 0.3-6. 
* gnu/packages/cran.scm (r-assertive): Update to 0.3-6.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus 9119cbafb5
gnu: r-assertive-datetimes: Update to 0.0-3. 
* gnu/packages/cran.scm (r-assertive-datetimes): Update to 0.0-3.
 2020-08-12 13:57:12 +02:00
Ricardo Wurmus 58cbcdeec0
gnu: r-assertive-reflection: Update to 0.0-5. 
* gnu/packages/cran.scm (r-assertive-reflection): Update to 0.0-5.
 2020-08-12 13:57:12 +02:00