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116279 commits

Author SHA1 Message Date
Ricardo Wurmus 266e54d7cb
gnu: Add python-spacy.
* gnu/packages/machine-learning.scm (python-spacy): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus d3934c7cc2
gnu: Add python-pathy.
* gnu/packages/python-xyz.scm (python-pathy): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus 7a78dd1e39
gnu: Add python-thinc.
* gnu/packages/machine-learning.scm (python-thinc): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus c3f7823670
gnu: Add python-blis-for-thinc.
* gnu/packages/maths.scm (python-blis-for-thinc): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus db8cf18517
gnu: Add python-spacy-loggers.
* gnu/packages/machine-learning.scm (python-spacy-loggers): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus e3f148a6df
gnu: Add python-spacy-legacy.
* gnu/packages/machine-learning.scm (python-spacy-legacy): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus 2ab5307488
gnu: yoshimi: Update to 2.3.0.
* gnu/packages/music.scm (yoshimi): Update to 2.3.0.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus 069618522d
gnu: Add python-blis.
* gnu/packages/maths.scm (python-blis): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus 28d5ec153c
gnu: blis: Update to 0.9.0.
* gnu/packages/maths.scm (blis): Update to 0.9.0.
[arguments]: Use G-expression; remove trailing #T from build phases.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus 0836c0769d
gnu: Add python-confection.
* gnu/packages/python-xyz.scm (python-confection): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus d8dcd1200a
gnu: Add python-srsly.
* gnu/packages/python-xyz.scm (python-srsly): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus ffcd2315e4
gnu: Add python-pubmed-parser.
* gnu/packages/python-xyz.scm (python-pubmed-parser): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus d7e0306aa5
gnu: Add python-duckdb.
* gnu/packages/python-xyz.scm (python-duckdb): New variable.
2023-06-08 10:37:08 +02:00
Ricardo Wurmus b9eb74d655
gnu: python-pyarrow: Include dataset support.
* gnu/packages/databases.scm (python-pyarrow)[arguments]: Remove obsolete
build phase 'make-git-checkout-writable; rename phase
'set-PYARROW_WITH_PARQUET to 'set-pyarrow-build-options and also enable
building of dataset extension.
2023-06-08 10:37:08 +02:00
Pierre Neidhardt e8f9fb3e03
gnu: conky: Update to 1.19.2.
* gnu/packages/conky.scm (conky): Update to 1.19.2.
2023-06-07 15:00:10 +02:00
Pierre Neidhardt 21696dce05
gnu: sbcl-cl-webkit: Update to 3.5.9.
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.5.9.
2023-06-07 14:50:15 +02:00
Ricardo Wurmus f57acde70b
gnu: python-flit: Update to 3.8.0.
* gnu/packages/python-xyz.scm (python-flit): Update to 3.8.0.
[build-system]: Use pyproject-build-system.
[arguments]: Run tests, but disable those that need networking; remove custom
'build phase; remove custom 'install phase; replace custom 'check phase with
new 'pre-check phase.
2023-06-07 14:28:50 +02:00
Ricardo Wurmus 433ca5a5c5
gnu: Add python-clickhouse-connect.
* gnu/packages/python-xyz.scm (python-clickhouse-connect): New variable.
2023-06-07 14:28:49 +02:00
Zheng Junjie 8504fad80c
gnu: sbcl: fix build on riscv64-linux.
* gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch: New
file.
* gnu/local.mk(dist_patch_DATA): register it.
* gnu/packages/lisp.scm (sbcl): [source]<patches>: Use it here.
2023-06-07 12:57:50 +03:00
Efraim Flashner df18bc8900
Revert "gnu: sbcl: fix build on riscv64-linux."
This reverts commit 2a6d2fc1d8.
2023-06-07 12:56:33 +03:00
Efraim Flashner 2a6d2fc1d8
gnu: sbcl: fix build on riscv64-linux.
* gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch: New
file.
* gnu/local.mk(dist_patch_DATA): register it.
* gnu/packages/lisp.scm (sbcl): [source]<patches>: Use it here.
2023-06-07 09:55:35 +03:00
Sharlatan Hellseher 4a5bbd293f
gnu: Sort use-module alphabetically in (gnu packages python-xyz).
* gnu/packages/python-xyz.scm: Sort use-module alphabetically to ease
maintenance.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07 09:49:47 +03:00
Sharlatan Hellseher 25fdd2e3af
gnu: Delete duplicated use-module from (gnu package python-xyz).
* gnu/packages/python-xyz.scm: Delete duplicated (gnu packages serialization).

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07 09:40:04 +03:00
Sharlatan Hellseher 15083a2fc3
gnu: python-can: Simplify package style.
* gnu/package/python-xyz.scm (python-can): Simplify package style.
[build-system]: Use pyproject-build-system.
[argument]: Use Gexp. Remove redundant modify-phases procedure. Add
{test-flags}.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07 09:39:35 +03:00
Sharlatan Hellseher 269fa79398
gnu: python-can: Update to 4.2.0.
* gnu/packages/python-xyz.scm (python-can): Update to 4.2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07 09:38:15 +03:00
Efraim Flashner a6e21911bf
gnu: hdf4: Add support for riscv64-linux.
* gnu/packages/maths.scm (hdf4)[arguments]: Rename custom phase
'add-more-aarch64-support to 'add-more-architecture-support and add
support for riscv64-linux.
* gnu/packages/patches/hdf4-architectures.patch: Refresh from upstream.
2023-06-07 09:30:52 +03:00
Efraim Flashner f8b1e50f30
gnu: fltk: Update source uri.
* gnu/packages/fltk.scm (fltk)[source]: Update source URI to follow
redirect.
2023-06-07 08:51:06 +03:00
Andy Tai b3f7f5eb53
gnu: fltk: Update to 1.3.8.
* gnu/packages/fltk.scm (fltk): Update to 1.3.8.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07 08:43:21 +03:00
Maxim Cournoyer 8f90ab2dd4
gnu: openconnect: Update to 9.12.
* gnu/packages/vpn.scm (openconnect): Update to 9.12.
2023-06-06 21:09:32 -04:00
Maxim Cournoyer b775c39b2c
gnu: openconnect: Fix indentation, remove input labels and use gexps.
* gnu/packages/vpn.scm (openconnect): Fix indentation.
[native-inputs, inputs, propagated-inputs]: Remove input labels.
[arguments]: Use gexps.
2023-06-06 21:09:31 -04:00
Maxim Cournoyer ec9f15b158
gnu: wxwidgets: Add libxtst to inputs.
WxWidgets was already built with XTest support, but mostly by luck, via
propagation of libxtst from GTK's propagated at-spi2-core package.  Make it an
explicit input.

* gnu/packages/wxwidgets.scm (wxwidgets) [inputs]: Add libxtst.
2023-06-06 21:09:31 -04:00
Efraim Flashner 5b3931c2ae
gnu: sonnet: Add support for aspell dictionaries.
* gnu/packages/kde-frameworks.scm (sonnet)[inputs]: Add aspell.
2023-06-06 23:40:02 +03:00
Efraim Flashner 2df940ab27
gnu: kirigami-addons: Update to 0.8.0.
* gnu/packages/kde.scm (kirigami-addons): Update to 0.8.0.
[source]: Download using git-fetch.
2023-06-06 23:40:02 +03:00
Navid Afkhami f056d4f168
gnu: Add python-decoupler-py.
* gnu/packages/bioinformatics.scm (python-decoupler-py): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2023-06-06 21:35:37 +02:00
Mark H Weaver 72243da2fb
gnu: icecat: Update to 102.12.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2023-34414 and CVE-2023-34416.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2023-06-06 14:41:03 -04:00
Gruruya 2199546a83
gnu: nim: Update to 1.6.12.
Without the attached patch, Nim is broken on Guix as it searches
for its stdlib in /lib while it was placed in /lib/nim.

* gnu/packages/nim.scm (nim): Update to 1.6.12.
[arguments]: In 'patch-installer phase install stdlib source to the
right directory.  In 'patch-more-shebangs phase edit substitute* to
point to the new osproc source.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06 19:24:47 +03:00
Josselin Poiret 1a2eb26286
services: Check if service is #f before applying clause.
* gnu/services.scm (apply-clauses): Check if service is #f before trying to
apply clause.  Follow up of 1819512073.
2023-06-06 13:38:35 +02:00
Ricardo Wurmus 0ae29db11d
gnu: python-anaconda-client: Fix build with Python 3.10.
* gnu/packages/package-management.scm (python-anaconda-client)[build-system]:
Use pyproject-bulid-system.
[arguments]: Move contents of 'remove-network-tests phase to #:test-flags;
drop trailing #T from 'set-HOME phase; add phase 'python3.10-compatibility;
disable test_conda_root and test_conda_root_outside_root_environment.
2023-06-06 13:04:14 +02:00
Navid Afkhami f800e7e88b
gnu: Add r-caretensemble.
* gnu/packages/cran.scm (r-caretensemble): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-06-06 12:55:52 +02:00
Ludovic Courtès 1819512073
services: 'modify-services' preserves service ordering.
Fixes <https://issues.guix.gnu.org/63921>.

The regression was introduced in
dbbc7e9461, which changed the order of
services.  As a result, someone using 'modify-services' could find
themselves with incorrect ordering of expressions in the "boot" script,
whereby the cleanup expressions would come after (execl ".../shepherd").
This, in turn, would lead shepherd to error out at boot with EADDRINUSE
on /var/run/shepherd/socket.

* gnu/services.scm (%delete-service, %apply-clauses): Remove.
(clause-alist): New macro.
(apply-clauses): New procedure.
(modify-services): Use it.  Adjust docstring.
* tests/services.scm ("modify-services: do nothing"): Remove 'sort' call.
("modify-services: delete service"): Likewise, and add 't4' service.
("modify-services: change value"): Remove 'sort' call and fix expected value.
2023-06-06 11:54:39 +02:00
Ludovic Courtès dc0c5d56ee
records: Use SRFI-11 instead of SRFI-71, for Guile 2.0 compatibility.
This fixes a failure of 'tests/packages.scm' introduced in
b88e38d4b51b9aa0e857baeb614c000e491ad309: some of the tests import (guix
records) on the build side, which uses '%bootstrap-guile' (Guile 2.0)
where SRFI-71 is unavailable.

* guix/records.scm (match-record-inner): Use SRFI-11 instead of SRFI-71.
2023-06-06 11:54:39 +02:00
Ludovic Courtès d62c6170ef
doc: Add missing node to the main menu.
This is a followup to 110462bb2f.

* doc/guix.texi (Top): Add "Mail Home Services" to the menu.
2023-06-06 11:54:39 +02:00
Guillaume Le Vaillant 9ad8b0c2ef
gnu: sbcl-stmx: Update to 2.0.5-2.f71e742.
* gnu/packages/lisp-xyz.scm (sbcl-stmx): Update to 2.0.5-2.f71e742.
  [arguments]: Add 'fix-build' phase.
2023-06-06 10:46:45 +02:00
Guillaume Le Vaillant b30c60316c
gnu: txr: Update to 287.
* gnu/packages/lisp.scm (txr): Update to 287.
2023-06-06 10:01:10 +02:00
Guillaume Le Vaillant b019b49c74
gnu: sbcl: Update to 2.3.5.
* gnu/packages/lisp.scm (sbcl): Update to 2.3.5.
2023-06-06 09:54:23 +02:00
Jean-Pierre De Jesus DIAZ e3cd3f0320
gnu: openocd: Update to 0.12.0.
* gnu/packages/embedded.scm (openocd): Update to 0.12.0.
[inputs]: Remove libusb-compat as openocd dropped support for libusb0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06 09:55:52 +03:00
Jean-Pierre De Jesus DIAZ f351f2aaf2
gnu: jimtcl: Update to 0.82.
* gnu/packages/embedded (jimtcl): Update to 0.82.
[arguments]: Use G-Expressions and update failing test, TTY test doesn't
fail anymore.
[inputs]: Add openssl as an input as now by default jimtcl enables the
SSL configuration option.
* gnu/packages/embedded (openocd): Support jimtcl 0.82.
[arguments]: Link against libssl and libcrypto.
[inputs]: Add openssl.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06 09:55:35 +03:00
Jean-Pierre De Jesus DIAZ cdbd87b6f3
gnu: libjaylink: Update to 0.3.1.
* gnu/packages/embedded (libjaylink): Update to 0.3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06 09:55:32 +03:00
Z572 d6ae80c742
gnu: thc-ipv6: Do not build with "-march=native".
* gnu/packages/networking.scm (thc-ipv6)[origin]: Add 'snippet'.
[properties]: New field.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06 09:22:46 +03:00
Leo Famulari 8937898af9
gnu: linux-libre 5.4: Update to 5.4.245.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.245.
(linux-libre-5.4-pristine-source): Update hash.
2023-06-05 19:18:56 -04:00