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Author SHA1 Message Date
Ricardo Wurmus c373223e63
gnu: Add r-graphite. 
* gnu/packages/bioconductor.scm (r-graphite): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 3eacc8fa8f
gnu: Add r-influencer. 
* gnu/packages/cran.scm (r-influencer): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus ff1146b9b1
gnu: Add r-curatedtcgadata. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 6f15ea2415
gnu: Add r-reactome-db. 
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
 2019-12-18 15:29:07 +01:00
Efraim Flashner 7e9d6f0f3f
gnu: libmicrohttpd: Update to 0.9.69. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
 2019-12-18 10:34:27 +02:00
Efraim Flashner 8fd6049403
gnu: cmst: Update to 2019.01.13. 
* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
 2019-12-18 10:29:28 +02:00
Efraim Flashner 92fe25130c
gnu: python-ecdsa: Actually run the test suite. 
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace
'check phase.
[native-inputs]: Add python-pytest.
 2019-12-18 09:54:47 +02:00
Efraim Flashner c57b8419f4
gnu: python-ecdsa: Update to 0.14.1. 
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1.
[inputs]: Move openssl ...
[native-inputs]: ... to here.
[propagated-inputs]: Add python-six.
 2019-12-18 09:53:48 +02:00
Björn Höfling 356a79becc
swh: Fix API call for getting origin. 
When using the archival linter, git origins already in the archive where
not recognized due to an API change and where repeatedly asked for archival.
This is fixed here.

* guix/swh.scm (lookup-origin): Fix API URI for getting origin.
(<origin>): Fix comment with API URI example.
 2019-12-17 23:29:32 +01:00
Mark H Weaver ef6856ea72
gnu: linux-libre: Update to 5.3.17. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17.
(linux-libre-5.3-pristine-source): Update hash.
 2019-12-17 17:24:23 -05:00
Mark H Weaver a15adacb52
gnu: linux-libre@4.19: Update to 4.19.90. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90.
(linux-libre-4.19-pristine-source): Update hash.
 2019-12-17 17:23:42 -05:00
Mark H Weaver 0bb64e1796
gnu: linux-libre@4.14: Update to 4.14.159. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159.
(linux-libre-4.14-pristine-source): Update hash.
 2019-12-17 17:22:36 -05:00
Ricardo Wurmus 29fd736a66
gnu: Add r-biobroom. 
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 48bcbef07a
gnu: Add r-bioassayr. 
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 991554fc92
gnu: Add r-chemminer. 
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus d38775b13f
gnu: Add r-bigpint. 
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 820373dbc8
gnu: Add r-bigmemoryextras. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 6ca6f8663b
gnu: Add r-biggr. 
* gnu/packages/bioconductor.scm (r-biggr): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 5aef09bd0e
gnu: Add r-hyperdraw. 
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 75a8bb3185
gnu: Add r-hypergraph. 
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus e823337c6e
gnu: Add r-rsbml. 
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 40fe63ad8a
gnu: Add r-bifet. 
* gnu/packages/bioconductor.scm (r-bifet): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus de9374b73c
gnu: Add r-bicare. 
* gnu/packages/bioconductor.scm (r-bicare): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 6bd50acf41
gnu: Add r-bhc. 
* gnu/packages/bioconductor.scm (r-bhc): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 75eb1149f3
gnu: Add r-bgx. 
* gnu/packages/bioconductor.scm (r-bgx): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus d11d6feafa
gnu: Add r-bgmix. 
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 1028bf0a05
gnu: Add r-rsvg. 
* gnu/packages/cran.scm (r-rsvg): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 59d485e118
gnu: Add r-shinycssloaders. 
* gnu/packages/cran.scm (r-shinycssloaders): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 96afb6c683
gnu: Add r-lim. 
* gnu/packages/cran.scm (r-lim): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus c686e53afe
gnu: Add r-diagram. 
* gnu/packages/cran.scm (r-diagram): New variable.
 2019-12-17 20:02:15 +01:00
Ricardo Wurmus 5828dd030b
gnu: Add r-poibin. 
* gnu/packages/cran.scm (r-poibin): New variable.
 2019-12-17 20:02:15 +01:00
Ricardo Wurmus 595036d9f9
gnu: Add libsbml. 
* gnu/packages/bioinformatics.scm (libsbml): New variable.
 2019-12-17 20:02:11 +01:00
Jethro Cao 328dd9b7c2
gnu: Add love-nuklear. 
* gnu/packages/game-development.scm (love-nuklear): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-17 17:41:28 +01:00
Guillaume Le Vaillant 2963ae8e4a
gnu: txr: Update to 229. 
* gnu/packages/lisp.scm (txr): Update to 229.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-17 17:41:28 +01:00
Konrad Hinsen a7c75b8dbf
gnu: gfortran: change to a hidden package 
* gnu/packages/gcc.scm (gfortran-4.8, gfortran-4.9)
(gfortran-5, gfortran-6, gfortran-7, gfortran-8)
(gfortran-9): Wrap in 'hidden-package'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-17 17:41:28 +01:00
Ludovic Courtès 3e313792aa
gnu: python-elasticsearch: Update to 7.1.0. 
* gnu/packages/python-web.scm (python-elasticsearch): Update to 7.1.0.
 2019-12-17 17:41:27 +01:00
Ricardo Wurmus aaa74ee57d
gnu: r-pracma: Update to 2.2.9. 
* gnu/packages/cran.scm (r-pracma): Update to 2.2.9.
 2019-12-17 14:58:33 +01:00
Ricardo Wurmus 5722022f88
gnu: r-repr: Update to 1.0.2. 
* gnu/packages/cran.scm (r-repr): Update to 1.0.2.
 2019-12-17 14:58:33 +01:00
Ricardo Wurmus cd0e2815d5
gnu: r-ggeffects: Update to 0.14.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.0.
[propagated-inputs]: Remove r-dplyr and r-rlang.
 2019-12-17 14:58:33 +01:00
Ricardo Wurmus f6e75823bd
gnu: r-dvmisc: Update to 1.1.4. 
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.4.
[propagated-inputs]: Add r-tab; remove r-purrr.
 2019-12-17 14:58:33 +01:00
Ricardo Wurmus 6e963260ae
gnu: r-ttr: Update to 0.23-6. 
* gnu/packages/cran.scm (r-ttr): Update to 0.23-6.
 2019-12-17 14:58:33 +01:00
Ricardo Wurmus 4d6ccb0000
gnu: r-argparser: Update to 0.6. 
* gnu/packages/cran.scm (r-argparser): Update to 0.6.
 2019-12-17 14:58:32 +01:00
Ricardo Wurmus f87c672789
gnu: r-ordinal: Update to 2019.12-10. 
* gnu/packages/cran.scm (r-ordinal): Update to 2019.12-10.
 2019-12-17 14:58:32 +01:00
Ricardo Wurmus f98480a975
gnu: r-seurat: Update to 3.1.2. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.2.
 2019-12-17 14:58:32 +01:00
Ricardo Wurmus 8a51ddce25
gnu: r-bh: Update to 1.72.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.72.0-1.
 2019-12-17 14:58:32 +01:00
Ricardo Wurmus 3b21f5814c
gnu: Add r-tab. 
* gnu/packages/cran.scm (r-tab): New variable.
 2019-12-17 14:58:32 +01:00
Ricardo Wurmus 5ba865a73f
gnu: Add r-gee. 
* gnu/packages/cran.scm (r-gee): New variable.
 2019-12-17 14:58:32 +01:00
Efraim Flashner 5a0beca3aa
gnu: shotwell: Clean-up inputs. 
* gnu/packages/gnome.scm (shotwell)[arguments]: Add phase to skip
gtk-update-icon-cache.
[inputs]: Sort alphabetically. Move glib:bin ...
[native-inputs]: ... to here. Remove desktop-file-utils, gtk+:bin.
 2019-12-17 10:23:02 +02:00
Efraim Flashner 914c8cdf07
gnu: dia: Fix version number. 
This commit is actually after to 0.97.3 release.

* gnu/packages/gnome.scm (dia)[version]: Use git-version.
[source]: Update to new source uri. Use git-file-name.
 2019-12-17 09:57:21 +02:00
Efraim Flashner 4b3e91de2d
gnu: dia: Don't override bootstrap phase. 
* gnu/packages/gnome.scm (dia)[arguments]: Remove custom 'run-autogen
phgase. Add phase before 'bootstrap to not run configure.
 2019-12-17 09:51:48 +02:00