TakeV/guix
1
0
Fork 0
Code Issues Pull requests Packages Projects Releases Wiki Activity
60040 commits 102 branches 35 tags 561 MiB
Commit graph

60040 commits

This branch
This branch
All branches
Author SHA1 Message Date
Roel Janssen 06fc1a5142
gnu: Add r-cummerbund. 
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
 2020-04-27 11:46:08 +02:00
Roel Janssen 91370829f4
gnu: Add r-inum. 
* gnu/packages/cran.scm (r-inum): New variable.
 2020-04-27 11:15:38 +02:00
Roel Janssen 415176e89d
gnu: Add r-ggpmisc. 
* gnu/packages/cran.scm (r-ggpmisc): New variable.
 2020-04-27 11:05:49 +02:00
Roel Janssen 0c0ef9c5a6
gnu: Add r-coverageview. 
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
 2020-04-27 10:57:22 +02:00
Ricardo Wurmus d4f86c8b66
gnu: Add peek. 
* gnu/packages/video.scm (peek): New variable.
 2020-04-27 10:46:12 +02:00
Ricardo Wurmus c170a15996
gnu: emacs-org-reveal: Fix syntax error in description. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo
syntax error.
 2020-04-27 10:45:51 +02:00
Ricardo Wurmus 320dd1195e
gnu: Add texlive-inconsolata. 
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
 2020-04-27 10:45:51 +02:00
Roel Janssen 8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
 2020-04-27 10:43:51 +02:00
Roel Janssen cb1ab0352b
gnu: Add r-karyoploter. 
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
 2020-04-27 10:37:42 +02:00
Roel Janssen e658838c62
gnu: Add r-bezier. 
* gnu/packages/cran.scm (r-bezier): New variable.
 2020-04-27 10:28:50 +02:00
Roel Janssen e8d435f7a2
gnu: Add r-ideoviz. 
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
 2020-04-27 10:24:20 +02:00
Roel Janssen df6c7f0487
gnu: Add r-ecp. 
* gnu/packages/cran.scm (r-ecp): New variable.
 2020-04-27 10:18:48 +02:00
Roel Janssen 8521d93854
gnu: Add r-reordercluster. 
* gnu/packages/cran.scm (r-reordercluster): New variable.
 2020-04-27 10:11:21 +02:00
Maxim Cournoyer 9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs. 
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase.  Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
 2020-04-27 00:54:44 -04:00
Maxim Cournoyer 1ae4325734
gnu: liblinphone: Fix the input type of some dependencies. 
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.

* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here.  Move eudev, python-pystache and python-six to
native-inputs.
 2020-04-27 00:54:30 -04:00
Maxim Cournoyer 8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs. 
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
 2020-04-27 00:54:30 -04:00
Brice Waegeneire 3b177a6c33
gnu: Add loadable module to wireguard-linux-compat. 
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-26 18:24:28 -04:00
Ludovic Courtès ccbc427f9a
channels: Use a declarative profile. 
* guix/channels.scm (package-cache-file): Use 'profile' instead of
'profile-derivation'.
 2020-04-26 22:49:49 +02:00
Ludovic Courtès 0e5c2d5e14
services: system: Initial entries are non-monadic. 
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
 2020-04-26 22:49:49 +02:00
Ludovic Courtès 45c84c8f6f
pack: Use a declarative profile. 
* guix/scripts/pack.scm (guix-pack): Use a declarative profile instead
of 'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès 45bd91334f
services: profile: Use a declarative profile. 
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'. 
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès ef674a24c5
profiles: Add lowerable <profile> record type. 
* guix/profiles.scm (<profile>): New record type.
* tests/profiles.scm ("<profile>"): New test.
 2020-04-26 22:49:48 +02:00
Efraim Flashner dc1182751c
gnu: vdirsyncer: Fix building man page. 
* gnu/packages/dav.scm (vdirsyncer)[arguments]: Add custom phase to
patch function retrieving the version string.
 2020-04-26 22:55:29 +03:00
Roel Janssen 1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description. 
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
 2020-04-26 21:47:19 +02:00
Roel Janssen 63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
 2020-04-26 21:34:49 +02:00
Maxim Cournoyer b58a22e5b7
gnu: Add hackneyed-x11-cursors. 
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
 2020-04-26 15:32:10 -04:00
Roel Janssen 886125d791
gnu: Add r-motifbreakr. 
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
 2020-04-26 21:24:03 +02:00
Roel Janssen 3699bcf54a
gnu: Add r-motifdb. 
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
 2020-04-26 21:07:45 +02:00
Roel Janssen ec20858a6a
gnu: Add r-pasilla. 
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
 2020-04-26 21:02:00 +02:00
Christopher Baines f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee. 
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
 2020-04-26 19:44:33 +01:00
Christopher Baines 53aa66c3df
reconfigure: Don't call build-derivations for upgrade-services test 
This commit adjusts the upgrade-services system test to not build anything
when computing the derivation for the system test.  I came across this when
looking at issues computing the system test derivations to store in the Guix
Data Service.

* gnu/tests/reconfigure.scm (run-upgrade-services-test): Remove the use of,
and definition for ensure-service-file.
 2020-04-26 19:41:56 +01:00
Christopher Baines 928dc1bb1c
substitute: Close port at the end of http-multiple-get. 
* guix/scripts/substitute.scm (http-multiple-get): Add close-port call.
 2020-04-26 19:37:25 +01:00
Christopher Baines d5abb3049e
substitute: Make http-multiple-get batch size configurable. 
* guix/scripts/substitute.scm (http-multiple-get): Add batch-size parameter.
 2020-04-26 19:37:24 +01:00
Christopher Baines 121191f23a
substitute: Use the same port for multiple request batches. 
In http-multiple-get.

* guix/scripts/substitute.scm (http-multiple-get): Switch port to p in one
occurrence.
 2020-04-26 19:37:22 +01:00
Lars-Dominik Braun 910bf1f7a1
gnu: Add tarsplitter. 
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 21:07:43 +03:00
Ricardo Wurmus d30d3e3f60
gnu: Add netdde. 
* gnu/packages/hurd.scm (netdde): New variable.
 2020-04-26 20:06:30 +02:00
Ricardo Wurmus 71b92e1abd
gnu: Add dde-sources. 
* gnu/packages/hurd.scm (dde-sources): New variable.
(hurd)[native-inputs]: Add it.
 2020-04-26 20:06:28 +02:00
Ricardo Wurmus 706b91ea8d
gnu: hurd: Build DDE libraries. 
* gnu/packages/hurd.scm (hurd)[native-inputs]: Add "dde-sources".
[inputs]: Add libpciaccess.
[arguments]: Add phase "prepare-dde".
 2020-04-26 20:06:17 +02:00
Jan (janneke) Nieuwenhuizen a7dbb95ca5
gnu: guix: Update to 569c55bee2. 
* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.569c55bee2.
 2020-04-26 19:52:43 +02:00
Jan (janneke) Nieuwenhuizen 569c55bee2
gnu: guix: Cross-build fix: override compressors. 
* gnu/packages/package-management.scm (guix)[arguments]: When cross-compiling,
add `fixup-compressors' stage.
[inputs]: When cross-compiling, add `xz'.
 2020-04-26 19:52:20 +02:00
Jan (janneke) Nieuwenhuizen 56389433bc
gnu: guix: Cross-build workaround: Run native guile for version. 
We need to take some care here, the native guile is not necessarily always the
same version as the host guile.

* gnu/packages/package-management.scm (guix)[arguments]: Do not attempt to run
host guile for getting effective-version; resort to native guile.
 2020-04-26 19:46:27 +02:00
Jan (janneke) Nieuwenhuizen d653e184ec
gnu: guix: Do not copy bootstrap-guile when cross-compiling. 
* gnu/packages/package-management.scm (guix)[arguments]: When cross-compiling,
skip copy-bootstrap-guile phase; needed for tests only.
 2020-04-26 19:46:27 +02:00
Leo Famulari ca4b55882a
gnu: Add rav1e. 
* gnu/packages/video.scm (rav1e): New variable.
* gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New
variables.
* gnu/packages/crates-io.scm: Various new packages and upgrades.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 19:57:46 +03:00
Efraim Flashner ee8de73814
gnu: python-scanpy: Update to 1.4.6. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
 2020-04-26 15:03:50 +03:00
Marius Bakke f589cbc4dc
Merge branch 'master' into core-updates 2020-04-26 13:48:06 +02:00
Marius Bakke 2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0. 
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke 52bdd30407
gnu: nim: Adjust for Guile 3.0. 
* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls
to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke 05e3ed302f
gnu: tpacpi-bat: Adjust for Guile 3.0. 
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination
in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke 30d0f7fa8f
gnu: nmoldyn: Adjust for Guile 3.0. 
* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00