Mark H Weaver
412bee5e29
Merge branch 'master' into core-updates
2016-01-24 21:04:54 -05:00
Ludovic Courtès
f6afc48008
gnu: grue-hunter: Use 'https' URL.
...
* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
2016-01-25 00:11:22 +01:00
Ben Woodcroft
bcadaf0050
gnu: Add sortmerna.
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* gnu/packages/bioinformatics.scm (sortmerna): New variable.
2016-01-25 08:35:11 +10:00
Andreas Enge
447f3ae7c1
gnu: calibre: Update to 2.49.0.
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* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
2016-01-24 20:12:05 +01:00
Ricardo Wurmus
541ed7b030
gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.
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* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
building libstdc++-v3 and enable building C++ compiler.
2016-01-24 14:25:20 +01:00
Ricardo Wurmus
a763ce7da9
gnu: Add Qtractor.
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* gnu/packages/music.scm (qtractor): New variable.
2016-01-24 14:20:52 +01:00
Ricardo Wurmus
8ddc5d5723
gnu: yoshimi: Update to 1.3.8.2.
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* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
2016-01-24 14:19:29 +01:00
Efraim Flashner
6b6a62dd05
gnu: privoxy: Update to 3.0.24.
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* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
2016-01-24 09:20:55 +02:00
Efraim Flashner
be866fb13e
gnu: tor: Update to 0.2.7.6.
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* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
2016-01-24 07:21:33 +02:00
Efraim Flashner
17206f72ed
gnu: myrepos: Update to 1.20160123.
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* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
2016-01-24 07:04:05 +02:00
Efraim Flashner
4c73302739
gnu: nano: Update to 2.5.1.
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* gnu/packages/nano.scm (nano): Update to 2.5.1.
2016-01-24 06:46:01 +02:00
Mark H Weaver
c5184468f5
build: container: Make 'unprivileged-user-namespace-supported?' more robust.
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* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only
read and check the first character, to cope with a possible newline in the
(pseudo-)file.
2016-01-23 18:44:03 -05:00
Leo Famulari
fe17fb4a2c
gnu: letsencrypt and acme: Update to 0.2.0.
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These packages should be updated together.
* gnu/packages/tls.scm (letsencrypt): Update to 0.2.0.
(acme): Update to 0.2.0.
2016-01-23 17:39:08 -05:00
Efraim Flashner
21565719e5
gnu: claws-mail: Update to 3.13.2.
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* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
2016-01-23 20:13:31 +02:00
Ricardo Wurmus
3a40a92c73
gnu: Add cufflinks.
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* gnu/packages/bioinformatics.scm (cufflinks): New variable.
2016-01-23 09:15:11 +01:00
Ricardo Wurmus
94ce537eac
gnu: Add TopHat.
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* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-23 08:53:10 +01:00
Ricardo Wurmus
3062d750b4
gnu: star: Update to 2.5.1b.
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* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b.
[source]: Remove bundled htslib sources and pre-built binaries.
[arguments]: Add phase "do-not-use-bundled-htslib".
[inputs]: Add "htslib".
2016-01-23 08:40:14 +01:00
Ricardo Wurmus
c0266e8d03
gnu: star: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases"
syntax.
2016-01-23 08:40:14 +01:00
Efraim Flashner
ebf89f134c
gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233].
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* gnu/packages/linux.scm (fuse): Update to 2.9.5.
2016-01-22 09:00:34 +02:00
宋文武
6871628999
gnu: mozjs: Make milestone.pl compatible with Perl 5.22+.
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* gnu/packages/gnuzilla.scm (mozjs, mozjs-24)[source]: Add snippet.
2016-01-22 14:42:10 +08:00
Eric Bavier
b6d937d99e
gnu: american-fuzzy-lop: Update to 1.96b.
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* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b.
[arguments]: Create symbolic link to custom qemu, rather than copying.
2016-01-21 23:54:48 -06:00
Eric Bavier
2d8211ab30
gnu: american-fuzzy-lop: Fix qemu configure flags.
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Fixes regression introduced in 06da1a6
.
* gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited
#:configure-flags.
2016-01-21 23:54:48 -06:00
Eric Bavier
1022da10e1
gnu: texi2html: Disable tests.
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* gnu/packages/texinfo.scm (texi2html): New 'arguments' field.
2016-01-21 22:09:42 -06:00
Leo Famulari
765973cd65
gnu: Add iftop.
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* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 20:21:19 -05:00
Leo Famulari
c2af02602a
Revert "gnu: Add iftop."
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This reverts commit 45da8c6dd1
.
2016-01-21 20:11:21 -05:00
Leo Famulari
45da8c6dd1
gnu: Add iftop.
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* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 18:11:12 -05:00
Ludovic Courtès
6b779207ee
system: grub: Search root device by label or UUID if possible.
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Fixes <http://bugs.gnu.org/22281 >.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.
* gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace
'search --file' command in the output with whatever 'grub-root-search'
returns.
(grub-root-search): New procedure.
(grub-configuration-file): Add 'store-fs' parameter. Use
'grub-root-search' instead of hard-coded 'search --file' commands.
* gnu/system.scm (store-file-system,
operating-system-store-file-system): New procedures.
(operating-system-grub.cfg): Use it, and adjust call to
'grub-configuration-file'.
* tests/system.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
2016-01-22 00:02:52 +01:00
Mark H Weaver
3738d8700f
gnu: ffmpeg: Update to 2.8.5.
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* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-21 10:30:21 -05:00
Mark H Weaver
0c0207a93b
gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688].
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* gnu/packages/messaging.scm (gajim): Update to 0.16.5.
[arguments]: Disable tests.
2016-01-21 10:24:44 -05:00
Ricardo Wurmus
6c92d8dd35
gnu: bind-utils: Build and install "nsupdate".
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* gnu/packages/dns.scm (bind-utils)[arguments]: Build and install
"nsupdate" executable.
2016-01-21 15:53:35 +01:00
Ricardo Wurmus
bd0eb6672b
gnu: bind-utils: Generalize "build" and "install" phases.
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* gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and
"install" phases.
2016-01-21 15:53:35 +01:00
Ricardo Wurmus
b2844d8f14
gnu: bind-utils: Use "modify-phases" syntax.
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* gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
2016-01-21 15:53:35 +01:00
Pjotr Prins
897092875e
gnu: r-qtl: Update to 1.38-4.
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* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.38-4.
2016-01-21 11:16:12 +01:00
Mark H Weaver
1207a0c33e
gnu: libxmp: Update to 4.3.10.
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* gnu/packages/audio.scm (libxmp): Update to 4.3.10.
2016-01-21 00:44:46 -05:00
Mark H Weaver
86fa2ea92f
gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}.
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* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
[source]: Add patches.
2016-01-21 00:30:15 -05:00
Eric Bavier
7ed0145712
gnu: Add NQC.
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* gnu/packages/lego.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-20 22:06:27 -06:00
Leo Famulari
feb767b23c
gnu: Add transmission-remote-cli.
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* gnu/packages/bittorrent.scm (transmission-remote-cli): New variable.
2016-01-20 20:19:46 -05:00
Eric Bavier
a2190cccc2
gnu: Add dependencies on Perl modules as needed.
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This is a follow-on to bb8afbf5
.
* gnu/packages/language.scm (perl-lingua-en-inflect, perl-lingua-stem)
(perl-snowball-norwegian, perl-snowball-swedish): Add 'native-inputs'
field.
* gnu/packages/perl.scm (perl-aliased, perl-class-accessor-chained)
(perl-datetime-set, perl-datetime-format-ical, perl-datetime-locale)
(perl-error, perl-module-runtime, perl-module-runtime-conflicts)
(perl-path-class, perl-posix-strftime-compiler, perl-readonly)
(perl-test-differences, perl-test-pod, perl-test-trap)
(perl-text-aligner, perl-text-glob, perl-text-table, perl-tie-ixhash)
(perl-time-mock): Ditto.
(perl-config-any): Add 'propagated-inputs' field.
(perl-data-page, perl-datetime, perl-datetime-format-natural)
(perl-moosex-getopt, perl-moosex-role-parameterized)
(perl-moosex-types, perl-namespace-autoclean, perl-params-validate)
(perl-tree-simple-visitorfactory)[native-inputs]: Add PERL-MODULE-BUILD.
(perl-file-changenotify)[native-inputs]: Ditto.
[propagated-inputs]: Add PERL-MODULE-PLUGGABLE.
(perl-datetime-format-flexible, perl-test-writevariants)
[propagated-inputs]: Ditto.
(perl-test-mockobject): Add 'arguments' field.
* gnu/packages/mail.scm (perl-email-abstract)[propagated-inputs]: Ditto.
* gnu/packages/web.scm (perl-datetime-format-http, perl-io-socket-ip)
(perl-plack-middleware-methodoverride, perl-uri-find)
(perl-www-mechanize): Add 'native-inputs' field.
(perl-html-template, perl-http-server-simple): Add 'propagated-inputs'
field.
(perl-apache-logformat-compiler, perl-html-tree)[native-inputs]:
Add PERL-MODULE-BUILD.
(perl-catalyst-runtime)[propagated-inputs]: Add PERL-MODULE-PLUGGABLE.
(perl-finance-quote)[propagated-inputs]: Add PERL-CGI.
2016-01-20 17:45:31 -06:00
Eric Bavier
97b07aaa41
gnu: Add perl-module-pluggable.
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This Perl module was moved out of Perl core in v5.19.0.
* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-20 17:45:31 -06:00
Eric Bavier
7b158c4ee2
gnu: Add perl-cgi.
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The CGI module was removed from Perl core in v5.21.0.
* gnu/packages/web.scm (perl-cgi): New variable.
2016-01-20 17:45:31 -06:00
Ludovic Courtès
893106cbbf
services: avahi: Export service type.
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* gnu/services/avahi.scm: Export 'avahi-service-type'.
2016-01-21 00:22:34 +01:00
Mark H Weaver
80b64ee2d8
gnu: isc-dhcp: Update bundled bind to 9.9.8-P3 [fixes CVE-2015-8704].
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* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.8-P3.
2016-01-20 14:58:40 -05:00
Mark H Weaver
d912db5bc0
gnu: bind-utils: Update to 9.10.3-P3 [fixes CVE-2015-8704].
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* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P3.
2016-01-20 14:57:06 -05:00
Mark H Weaver
beed3af565
gnu: linux-libre: Add fix for CVE-2016-0728.
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* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
2016-01-20 13:23:42 -05:00
David Thompson
d4df203292
gnu: obs: Add support for webcams.
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* gnu/packages/video.scm (obs)[inputs]: Add v4l-utils.
2016-01-20 11:46:45 -05:00
David Thompson
945d985aab
gnu: Add v4l-utils.
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* gnu/packages/video.scm (v4l-utils): New variable.
2016-01-20 11:46:45 -05:00
Andreas Enge
f32ee38fcd
gnu: arb: Correct patch.
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* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.
This is a follow-up to commit ffc8f34511
.
2016-01-20 16:57:17 +01:00
Andreas Enge
ffc8f34511
gnu: arb: Update to 2.8.1.
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* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
2016-01-20 16:33:34 +01:00
Andreas Enge
05944b3aa6
gnu: doxygen: Drop propagated input graphviz.
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* gnu/packages/doxygen.scm (doxygen)[propagated-inputs]: Drop graphviz.
2016-01-20 13:23:25 +01:00
Andreas Enge
7c853c02b8
gnu: doxygen: Update to 1.8.11.
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* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
Drop one patch.
[build-system]: Switch to cmake-build-system, since gnu-build-system
is not supported any more.
[arguments]: Adapt.
[native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
2016-01-20 13:19:48 +01:00