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148 commits

Author SHA1 Message Date
Ricardo Wurmus
d7786ce9b0 gnu: r-sparsem: Add missing "gfortran" input. 
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
 2016-01-14 14:43:59 +01:00
Andreas Enge
695bea9803 gnu: r: Update to 3.2.3. 
* gnu/packages/statistics.scm (r): Update to 3.2.3.
 2016-01-09 23:18:28 +01:00
Ricardo Wurmus
fbf6045e33 gnu: Add plotly. 
* gnu/packages/statistics.scm (r-plotly): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus
a28d646b63 gnu: Add viridis. 
* gnu/packages/statistics.scm (r-viridis): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus
e05c37da4a gnu: Add matrixStats. 
* gnu/packages/statistics.scm (r-matrixstats): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus
3703ffb41f gnu: Add R.rsp. 
* gnu/packages/statistics.scm (r-r-rsp): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus
a63efbb453 gnu: Add R.cache. 
* gnu/packages/statistics.scm (r-r-cache): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus
9c94b53b5b gnu: Add R.utils. 
* gnu/packages/statistics.scm (r-r-utils): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus
c8c75a8d88 gnu: Add R.oo. 
* gnu/packages/statistics.scm (r-r-oo): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus
8bfe007c9c gnu: Add R.methodsS3. 
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
a69a593595 gnu: Add base64enc. 
* gnu/packages/statistics.scm (r-base64enc): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
a8227e4ae9 gnu: Add DT. 
* gnu/packages/statistics.scm (r-dt): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
d706257b5b gnu: Add SparseM. 
* gnu/packages/statistics.scm (r-sparsem): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
bc899123e7 gnu: Add snow. 
* gnu/packages/statistics.scm (r-snow): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
6b82f56cf9 gnu: Add futile.logger. 
* gnu/packages/statistics.scm (r-futile-logger): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
b9ff33b50e gnu: Add futile.options. 
* gnu/packages/statistics.scm (r-futile-options): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
ca65d387fd gnu: Add lambda.r. 
* gnu/packages/statistics.scm (r-lambda-r): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
543ded3619 gnu: Add r-xml. 
* gnu/packages/statistics.scm (r-xml): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
cefaa79c9e gnu: Add RCurl. 
* gnu/packages/statistics.scm (r-rcurl): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus
21e4d6a9cf gnu: Add RSQLite. 
* gnu/packages/statistics.scm (r-rsqlite): New variable.
 2016-01-07 17:18:15 +01:00
Ricardo Wurmus
9e47f30b08 gnu: Add r-gridextra. 
* gnu/packages/statistics.scm (r-gridextra): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus
b73751c8ff gnu: Add r-gtable. 
* gnu/packages/statistics.scm (r-gtable): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus
77bdb276e9 gnu: Add r-rmarkdown. 
* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
  prevent circular package module imports.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus
4c1f2705b5 gnu: Add r-catools. 
* gnu/packages/statistics.scm (r-catools): New variable.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus
bb6d2dadf7 gnu: Add r-bitops. 
* gnu/packages/statistics.scm (r-bitops): New variable.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus
e22d4ca4c4 gnu: Add r-rcpparmadillo. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
 2015-12-21 16:05:37 +01:00
Ricardo Wurmus
ca3476cd6c gnu: Add r-lattice. 
* gnu/packages/statistics.scm (r-lattice): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus
2a40f76389 gnu: Add r-gridbase. 
* gnu/packages/statistics.scm (r-gridbase): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus
60a9d3d0ac gnu: Add r-plotrix. 
* gnu/packages/statistics.scm (r-plotrix): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus
03af370f6e gnu: Add r-readr. 
* gnu/packages/statistics.scm (r-readr): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus
62141c07f7 gnu: Rename r-data.table to r-data-table. 
* gnu/packages/statistics.scm (r-data.table): Rename variable ...
(r-data-table): ... to this.
[description]: Clarify relation to data.frame.
[license]: Use correct license.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus
d6e21589af gnu: Add r-devtools. 
* gnu/packages/statistics.scm (r-devtools): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
81a4228b18 gnu: Add r-rstudioapi. 
* gnu/packages/statistics.scm (r-rstudioapi): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
035711f1f5 gnu: Add r-git2r. 
* gnu/packages/statistics.scm (r-git2r): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
681e03c12d gnu: Add r-httr. 
* gnu/packages/statistics.scm (r-httr): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
167c988263 gnu: Add r-roxygen2. 
* gnu/packages/statistics.scm (r-roxygen2): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
13d083af59 gnu: Add r-brew. 
* gnu/packages/statistics.scm (r-brew): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
1a77eccd0e gnu: Add r-whisker. 
* gnu/packages/statistics.scm (r-whisker): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
6140747f06 gnu: Add r-rversions. 
* gnu/packages/statistics.scm (r-rversions): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
67a167fdf7 gnu: Add r-xml2. 
* gnu/packages/statistics.scm (r-xml2): New variable.
 2015-11-16 11:09:49 +01:00
Ricardo Wurmus
37fdba7e0b gnu: Add python-statsmodels. 
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
  New variables.
 2015-10-22 17:35:13 +02:00
Ricardo Wurmus
9bc08aa0cb gnu: Add python-patsy. 
* gnu/packages/statistics.scm (python-patsy, python2-patsy): New
  variables.
 2015-10-22 17:35:05 +02:00
Vicente Vera Parra
0e4e03f884 gnu: Add r-data.table. 
* gnu/packages/statistics.scm (r-data.table): New variable.
 2015-09-28 11:07:23 +02:00
Vicente Vera Parra
91312ebed4 gnu: Add r-chron. 
* gnu/packages/statistics.scm (r-chron): New variable.
 2015-09-28 11:07:10 +02:00
Ricardo Wurmus
91781b7498 gnu: r-scales: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.3.0.
 2015-09-21 11:04:17 +02:00
Vicente Vera Parra
2a3a8ae753 gnu: Add r-dplyr. 
* gnu/packages/statistics.scm (r-dplyr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
ffd4b47851 gnu: Add r-r6. 
* gnu/packages/statistics.scm (r-r6): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
5b9789a6ff gnu: Add r-testthat. 
* gnu/packages/statistics.scm (r-testthat): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
834f7ff3c0 gnu: Add r-crayon. 
* gnu/packages/statistics.scm (r-crayon): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
b668a95cf3 gnu: Add r-memoise. 
* gnu/packages/statistics.scm (r-memoise): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
0661b4db2e gnu: Add r-pryr. 
* gnu/packages/statistics.scm (r-pryr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
1cf1cbb0ac gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
4f0e84845d gnu: Add r-microbenchmark. 
* gnu/packages/statistics.scm (r-microbenchmark): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
213656b95b gnu: Add r-knitr. 
* gnu/packages/statistics.scm (r-knitr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
ea3a80957a gnu: Add r-yaml. 
* gnu/packages/statistics.scm (r-yaml): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
3f8ac35330 gnu: Add r-markdown. 
* gnu/packages/statistics.scm (r-markdown): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
acbb40fa20 gnu: Add r-mime. 
* gnu/packages/statistics.scm (r-mime): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
ad3f005bdd gnu: Add r-highr. 
* gnu/packages/statistics.scm (r-highr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
c5bf3abe34 gnu: Add r-formatr. 
* gnu/packages/statistics.scm (r-formatr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
256ccc926c gnu: Add r-evaluate. 
* gnu/packages/statistics.scm (r-evaluate): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
675c9f447b gnu: Add r-bh. 
* gnu/packages/statistics.scm (r-bh): New variable.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus
9cda36227b gnu: Use cran-uri in source expressions. 
* gnu/packages/statistics.scm (r-colorspace, r-dichromat, r-digest,
  r-gtable, r-labeling, r-magrittr, r-munsell, r-rcpp, r-plyr, r-proto,
  r-rcolorbrewer, r-stringi, r-stringr, r-reshape2, r-scales, r-ggplot2,
  r-assertthat, r-lazyeval, r-dbi): Use cran-uri in source expressions.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
8ea6b30fea gnu: Add r-dbi. 
* gnu/packages/statistics.scm (r-dbi): New variable.
 2015-09-16 12:01:12 +02:00
Vicente Vera Parra
6af4813430 gnu: Add r-lazyeval. 
* gnu/packages/statistics.scm (r-lazyeval): New variable.
 2015-09-15 22:33:57 +02:00
Vicente Vera Parra
ed6094fc77 gnu: Add r-assertthat. 
* gnu/packages/statistics.scm (r-assertthat): New variable.
 2015-09-15 21:09:02 +02:00
Ludovic Courtès
718a2bde42 gnu: r-stringr: Provide valid 'home-page' URL. 
* gnu/packages/statistics.scm (r-stringr)[home-page]: Set to valid URL.
 2015-09-06 12:36:15 +02:00
Ricardo Wurmus
02615bfa2f gnu: r: Drop texlive from native-inputs. 
* gnu/packages/statistics.scm (r)[native-inputs]: Remove "texlive".
 2015-09-04 11:55:16 +02:00
Ricardo Wurmus
af23b6e946 gnu: r: Install info documentation. 
* gnu/packages/statistics.scm (r)[arguments]: Add phases "make-info" and
  "install-info" to build and install info documentation.
 2015-09-04 11:55:16 +02:00
Ricardo Wurmus
5e9738b7ca gnu: r: Drop IcedTea from inputs. 
* gnu/packages/statistics.scm (r)[inputs]: Remove "icedtea6".
 2015-09-04 11:55:16 +02:00
Ricardo Wurmus
d11b808f4a gnu: Add r-ggplot2. 
* gnu/packages/statistics.scm (r-ggplot2): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
a11ee478a6 gnu: Add r-scales. 
* gnu/packages/statistics.scm (r-scales): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
9ca731baf1 gnu: Add r-reshape2. 
* gnu/packages/statistics.scm (r-reshape2): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
d5cd5c1568 gnu: Add r-stringr. 
* gnu/packages/statistics.scm (r-stringr): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
4dca98dc81 gnu: Add r-stringi. 
* gnu/packages/statistics.scm (r-stringi): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
a45ba1270c gnu: Add r-rcolorbrewer. 
* gnu/packages/statistics.scm (r-rcolorbrewer): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
9a4d8968f0 gnu: Add r-proto. 
* gnu/packages/statistics.scm (r-proto): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
7e10056b6b gnu: Add r-plyr. 
* gnu/packages/statistics.scm (r-plyr): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
ea69e2f853 gnu: Add r-rcpp. 
* gnu/packages/statistics.scm (r-rcpp): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
4437333958 gnu: Add r-munsell. 
* gnu/packages/statistics.scm (r-munsell): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
d69c4b04fa gnu: Add r-magrittr. 
* gnu/packages/statistics.scm (r-magrittr): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
b7eee9fc65 gnu: Add r-labeling. 
* gnu/packages/statistics.scm (r-labeling): New variable.
 2015-09-03 14:31:51 +02:00
Ricardo Wurmus
112bb3c04f gnu: Add r-gtable. 
* gnu/packages/statistics.scm (r-gtable): New variable.
 2015-09-03 14:31:50 +02:00
Ricardo Wurmus
177f38c7fe gnu: Add r-digest. 
* gnu/packages/statistics.scm (r-digest): New variable.
 2015-09-03 14:31:50 +02:00
Ricardo Wurmus
3587effb7a gnu: Add r-dichromat. 
* gnu/packages/statistics.scm (r-dichromat): New variable.
 2015-09-03 14:31:50 +02:00
Ricardo Wurmus
b12636e6bb gnu: Add r-colorspace. 
* gnu/packages/statistics.scm (r-colorspace): New variable.
 2015-09-03 14:31:50 +02:00
Ricardo Wurmus
12a9f4af01 gnu: r: Add R_LIBS_SITE to native-search-paths. 
* gnu/packages/statistics.scm (r)[native-search-paths]: Add
  specification for "R_LIBS_SITE" variable.
 2015-08-17 10:35:41 +02:00
Ricardo Wurmus
62de2545e1 gnu: r: Update to 3.2.2. 
* gnu/packages/statistics.scm (r): Update to 3.2.2.
 2015-08-17 10:35:41 +02:00
Ricardo Wurmus
b05d1c68bc gnu: r: Replace "atlas" with "openblas". 
* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas".
 2015-07-03 18:45:14 +02:00
Ricardo Wurmus
f4f4ced8dc gnu: r: Set default pager. 
* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to
  avoid "false" as a default pager.
 2015-07-02 10:50:55 +02:00
Ricardo Wurmus
74e03fccd3 gnu: r: Update to 3.2.1. 
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 16:13:28 +02:00
Ricardo Wurmus
19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ricardo Wurmus
83a0db178f gnu: r: Use gfortran-4.9. 
* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
  gfortran-4.9.
 2015-06-24 12:03:00 +02:00
Ricardo Wurmus
9099e88182 gnu: r: Apply patch to fix linking against R. 
* gnu/packages/patches/r-fix-15899.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r)[source]: Use it.
 2015-05-21 11:54:46 +02:00
Ricardo Wurmus
3c43bcc68d gnu: r: Update to 3.2.0. 
* gnu/packages/statistics.scm (r): Update to 3.2.0.
 2015-04-23 13:07:11 +02:00
Ricardo Wurmus
ff2b1c17b8 gnu: r: Set library rpath. 
* gnu/packages/statistics.scm (r)[arguments]: Add the rpath for lib directory
  of output to LDFLAGS.
 2015-04-23 13:07:10 +02:00
Ludovic Courtès
ce0614ddb0 gnu: Move 'which' to (gnu packages base). 
* gnu/packages/which.scm: Remove.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/base.scm (which): New variable.
* gnu/packages/aspell.scm, gnu/packages/audio.scm,
  gnu/packages/autogen.scm, gnu/packages/cdrom.scm,
  gnu/packages/compression.scm, gnu/packages/datamash.scm,
  gnu/packages/games.scm, gnu/packages/glib.scm,
  gnu/packages/gnu-pw-mgr.scm, gnu/packages/gnutls.scm,
  gnu/packages/gps.scm, gnu/packages/guile.scm,
  gnu/packages/java.scm, gnu/packages/libevent.scm,
  gnu/packages/linux.scm, gnu/packages/lisp.scm,
  gnu/packages/node.scm, gnu/packages/ntp.scm,
  gnu/packages/orpheus.scm, gnu/packages/pciutils.scm,
  gnu/packages/python.scm, gnu/packages/qt.scm,
  gnu/packages/rsync.scm, gnu/packages/sawfish.scm,
  gnu/packages/scheme.scm, gnu/packages/ssh.scm,
  gnu/packages/statistics.scm, gnu/packages/texlive.scm,
  gnu/packages/wdiff.scm: Adjust accordingly.
 2015-03-04 17:23:27 +01:00
Ricardo Wurmus
0e309f1e5b gnu: icedtea6: split outputs. 
* gnu/packages/java.scm (icedtea6)[outputs]: Use separate outputs for
  documentation ("doc"), JDK ("jdk"), and JRE ("out").
* gnu/packages/java.scm (ant)[native-inputs]: Reference "jdk" output of
  icedtea6 package.
* gnu/packages/statistics.scm (r)[inputs]: Reference "jdk" output of icedtea6
  package.
 2015-03-04 15:59:41 +01:00
Ricardo Wurmus
cb7e486797 gnu: Add R. 
* gnu/packages/statistics.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it
* guix/download.scm (%mirrors): Add CRAN mirrors.
 2015-02-16 16:35:41 +01:00