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Author SHA1 Message Date
Xinglu Chen be2b2e884b
gnu: Add emacs-envrc. 
* gnu/packages/emacs-xyz.scm (emacs-envrc): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-05 17:26:19 +01:00
Stefan Reichör e693927a74
gnu: Add lr. 
* gnu/packages/admin.scm (lr): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-05 17:23:18 +01:00
Stefan Reichör 697a4c464d
gnu: Add emacs-springboard. 
* gnu/packages/emacs-xyz.scm (emacs-springboard): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-05 17:20:01 +01:00
Stefan Reichör 1fe75f8397
gnu: Add emacs-multifiles. 
* gnu/packages/emacs-xyz.scm (emacs-multifiles): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-05 17:15:39 +01:00
John Soo 92894e64a0
gnu: emacs-eglot: Add missing dependency. 
* gnu/packages/emacs-xyz.scm (emacs-eglot):[arguments] Add dependency.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-05 17:03:10 +01:00
John Soo ad0c8f7eaa
gnu: Add emacs-eldoc. 
* gnu/packages/emacs-xyz.scm (emacs-eldoc): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-05 17:02:47 +01:00
Tobias Geerinckx-Rice 81aa2fa4ae
gnu: php: Update to 7.4.16 [security fixes]. 
* gnu/packages/php.scm (php): Update to 7.4.16.
[arguments]: Patch failing new test.
 2021-03-05 16:12:31 +01:00
Mădălin Ionel Patrașcu 297531ef58
gnu: Add r-circrnaprofiler. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
 2021-03-05 16:07:06 +01:00
Mădălin Ionel Patrașcu 1353e53605
gnu: Add r-universalmotif. 
* gnu/packages/bioconductor.scm (r-universalmotif): New variable.
 2021-03-05 16:07:06 +01:00
Mădălin Ionel Patrașcu dfbbc73670
gnu: Add r-rcppthread. 
* gnu/packages/cran.scm (r-rcppthread): New variable.
 2021-03-05 16:07:03 +01:00
Julien Lepiller 58277e68d4
gnu: camlboot: Raise max-silent-time timeout value to 4 hours. 
* gnu/packages/ocaml.scm (camlboot)[properties]: Add a 'max-silent-time'
property, with a value of 4 hours.
 2021-03-05 15:53:36 +01:00
Ricardo Wurmus f5c3e8e2ec
gnu: Add r-cellchat. 
* gnu/packages/bioinformatics.scm (r-cellchat): New variable.
 2021-03-05 15:04:15 +01:00
Ricardo Wurmus c0c3f7466c
gnu: Add r-gg-gap. 
* gnu/packages/cran.scm (r-gg-gap): New variable.
 2021-03-05 15:04:15 +01:00
Felix Gruber b2a94e59b8
gnu: virtualpg: Update to 2.0.1. 
* gnu/packages/geo.scm (virtualpg): Update to 2.0.1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-05 13:47:43 +01:00
Philip McGrath d2278beb10
gnu: racket: Update to 8.0. 
* gnu/packages/scheme.scm (racket): Update to 8.0.
[arguments]: Add #:configure-flags.  Add 'patch-chez-configure' phase.
[inputs]: Add "zlib", "zlib:static", "lz4", and "lz4:static".
[synopsis, description]: Tweak.
(racket-minimal): Update to 8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-05 12:49:28 +01:00
Ludovic Courtès b1248016e0
tests: Refer to '%derivation-cache' in the right module. 
* guix/tests.scm (call-with-external-store): Fix module name for
'%derivation-cache'.
 2021-03-05 12:49:28 +01:00
Ludovic Courtès 9d349afaa1
download: 'url-fetch/tarbomb' and 'url-fetch/zipbomb' refer to native tools. 
* guix/download.scm (url-fetch/tarbomb, url-fetch/zipbomb): Use
'ungexp-native' instead of 'ungexp' when referring to the decompression
tools.
 2021-03-05 12:49:28 +01:00
Ludovic Courtès 6de3ef0d5e
gexp: Honor #:target in 'compiled-modules'. 
* guix/gexp.scm (compiled-modules): Pass #:target to 'gexp->derivation'.
 2021-03-05 12:49:28 +01:00
Ludovic Courtès c19304d2d2
doc: Refer to the right node for '--keep-failed'. 
* doc/guix.texi (Invoking guix-daemon, Debugging Build Failures): Refer
to "Common Build Options" for '--keep-failed'.
 2021-03-05 12:49:27 +01:00
Ludovic Courtès 90ea8b16eb
profiles: 'package->manifest-entry' preserves transformations by default. 
Previously, transformations applied from a manifest (rather than via
"guix install") would be lost.  This change fixes that and simplifies
things.

Reported by zimoun at
<https://lists.gnu.org/archive/html/guix-devel/2021-02/msg00153.html>.

* guix/profiles.scm (default-properties): New procedure.
(package->manifest-entry): Use it for #:properties.
* guix/scripts/pack.scm (guix-pack)[with-transformations]: Remove.
Remove caller.
* guix/scripts/package.scm (transaction-upgrade-entry): Remove calls to
'manifest-entry-with-transformations'.
* tests/guix-package.sh: Add test.
* tests/transformations.scm ("options->transformation + package->manifest-entry"):
New test.
 2021-03-05 12:49:27 +01:00
Guillaume Le Vaillant c9d42d611c
gnu: hamlib: Update to 4.1. 
* gnu/packages/radio.scm (hamlib): Update to 4.1.
 2021-03-05 10:46:15 +01:00
Christopher Baines c6c48494e3
services: guix-build-coordinator: Add dynamic auth with file record. 
* gnu/services/guix.scm (guix-build-coordinator-agent-dynamic-auth-with-file,
guix-build-coordinator-agent-dynamic-auth-with-filen?,
guix-build-coordinator-agent-dynamic-auth-with-file-agent-name,
guix-build-coordinator-agent-dynamic-auth-with-file-token-file): New procedures.
(guix-build-coordinator-agent-shepherd-services): Handle new dynamic auth with
file record.
* doc/guix.texi (Guix Build Coordinator): Document the new dynamic auth with
file record.
 2021-03-05 09:29:58 +00:00
Kei Kebreau 6891f95739
gnu: mupdf: Fix CVE-2021-3407. 
* gnu/packages/pdf.scm (mupdf)[source]: Add patch.
* gnu/packages/patches/mupdf-CVE-2021-3407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2021-03-04 20:12:07 -05:00
Leo Famulari d5a8e530d7
gnu: linux-libre 4.19: Update to 4.19.178. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.178.
(linux-libre-4.19-pristine-source): Update hash.
 2021-03-04 19:59:35 -05:00
Leo Famulari e703977e65
gnu: linux-libre 5.4: Update to 5.4.102. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.102.
(linux-libre-5.4-pristine-source): Update hash.
 2021-03-04 19:59:35 -05:00
Leo Famulari 1a6f3c8069
gnu: linux-libre 5.10: Update to 5.10.20. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.20.
(linux-libre-5.10-pristine-source): Update hash.
 2021-03-04 19:59:35 -05:00
Leo Famulari b12696075d
gnu: linux-libre: Update to 5.11.3. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.3.
(linux-libre-5.11-pristine-source, deblob-scripts-5.11): Update hashes.
 2021-03-04 19:59:31 -05:00
Efraim Flashner bc10203475
gnu: ruby-minitest: Update to 5.12.2. 
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.12.2.
 2021-03-04 22:48:38 +02:00
Efraim Flashner e8fe0304bc
gnu: ruby-builder: Update to 3.2.4. 
* gnu/packages/ruby.scm (ruby-builder): Update to 3.2.4.
 2021-03-04 22:48:35 +02:00
Nicolas Goaziou f4521346b0
gnu: ripgrep: Fix build. 
* gnu/packages/rust-apps.scm (ripgrep)[arguments]: Disable tests for now. Some
are failing due to recent rust-bstr upgrade.
 2021-03-04 17:14:17 +01:00
Tobias Geerinckx-Rice f6a94e7e33
gnu: mariadb-connector-c: Fix source tarball file name. 
* gnu/packages/databases.scm (mariadb-connector-c)[source]: Add a FILE-NAME.
 2021-03-04 17:07:49 +01:00
Tobias Geerinckx-Rice 51059be366
gnu: mariadb-connector-c: Update to 3.1.12. 
* gnu/packages/databases.scm (mariadb-connector-c): Update to 3.1.12.
 2021-03-04 17:07:49 +01:00
Tobias Geerinckx-Rice 69f75ce198
gnu: pigz: Update to 2.6. 
* gnu/packages/compression.scm (pigz): Update to 2.6.
 2021-03-04 17:07:49 +01:00
Tobias Geerinckx-Rice afeb2e27bb
gnu: clzip: Update to 1.12. 
* gnu/packages/compression.scm (clzip): Update to 1.12.
 2021-03-04 17:07:48 +01:00
Tobias Geerinckx-Rice 2e142b1c62
gnu: simde: Update to 0.7.2. 
* gnu/packages/assembly.scm (simde): Update to 0.7.2.
 2021-03-04 17:07:48 +01:00
Tobias Geerinckx-Rice 9aa8f57f40
gnu: fasm: Update to 1.73.27. 
* gnu/packages/assembly.scm (fasm): Update to 1.73.27.
 2021-03-04 17:07:48 +01:00
Tobias Geerinckx-Rice 779243832c
gnu: libolm: Update to 3.2.2. 
* gnu/packages/crypto.scm (libolm): Update to 3.2.2.
 2021-03-04 17:07:48 +01:00
Tobias Geerinckx-Rice b94d4e6a1d
gnu: indi: Update to 1.8.9. 
* gnu/packages/astronomy.scm (indi): Update to 1.8.9.
 2021-03-04 17:07:47 +01:00
Tobias Geerinckx-Rice cb93d420cd
gnu: oath-toolkit: Update to 2.6.6. 
* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.6.
 2021-03-04 17:07:47 +01:00
Tobias Geerinckx-Rice 93aaaecb29
gnu: libisofs: Update to 1.5.4. 
* gnu/packages/cdrom.scm (libisofs): Update to 1.5.4.
 2021-03-04 17:07:47 +01:00
Efraim Flashner ab10e1086c
gnu: python-jedi: Allow test phase to be skipped. 
* gnu/packages/python-xyz.scm (python-jedi)[arguments]: Wrap custom
'check phase tests with check for tests? keyword.
 2021-03-04 16:19:19 +02:00
Tobias Geerinckx-Rice b12974ec52
gnu: dovecot-pigeonhole: Update to 0.5.14. 
* gnu/packages/mail.scm (dovecot-pigeonhole): Update to 0.5.14.
 2021-03-04 14:11:56 +01:00
Tobias Geerinckx-Rice 1c8a328331
gnu: dovecot: Update to 2.3.14. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.14.
 2021-03-04 14:11:56 +01:00
Efraim Flashner e9096ef105
gnu: python-plotly: Allow test phase to be skipped. 
* gnu/packages/graph.scm (python-plotly)[arguments]: Wrap custom 'check
phase tests with test with tests? keyword.
 2021-03-04 14:48:43 +02:00
Efraim Flashner 3e5d811387
gnu: python-plotly: Update to 4.14.3. 
* gnu/packages/graph.scm (python-plotly): Update to 4.14.3.
[propagated-inputs]: Remove python-decorator. Add python-ipython,
python-pillow. Move python-ipywidgets, python-xarray ...
[native-inputs]: ... to here.
 2021-03-04 14:48:43 +02:00
cage 865728dd52
gnu: Add tinmop. 
* gnu/packages/web-browsers.scm (tinmop): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-04 11:11:12 +01:00
Guillaume Le Vaillant 85eaafafbb
gnu: sbcl-esrap: Update to 0.18-1.da6b24f. 
* gnu/packages/lisp-xyz.scm (sbcl-esrap): Update to 0.18-1.da6b24f.
  [source, home-page]: Update to new maintainer's URL.
  [native-inputs]: Remove eos, add fiveam.
  [description]: Add new features.
 2021-03-04 10:50:11 +01:00
cage 09f60f9e3e
gnu: Add cl-percent-encoding. 
* gnu/packages/lisp-xyz.scm (cl-percent-encoding, ecl-percent-encoding,
  sbcl-percent-encoding): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-04 10:37:30 +01:00
cage f934892cbb
gnu: Add cl-html5-parser. 
* gnu/packages/lisp-xyz.scm (cl-html5-parser, ecl-cl-html5-parser,
  sbcl-cl-html5-parser): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-04 10:29:07 +01:00
cage 9e9c9a3a02
gnu: Add cl-crypto-shortcuts. 
* gnu/packages/lisp-xyz.scm (cl-crypto-shortcuts, ecl-crypto-shortcuts,
  sbcl-crypto-shortcuts): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-04 10:20:15 +01:00