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Author SHA1 Message Date
Ludovic Courtès
052f56e5a6
gnu: guix: Update to 8cc099b. 
* gnu/packages/package-management.scm (guix): Update to 8cc099b.
 2021-12-02 12:52:59 +01:00
Ricardo Wurmus
a8fff63daa
gnu: Add python-mygene. 
* gnu/packages/bioinformatics.scm (python-mygene): New variable.
 2021-12-02 11:57:28 +01:00
Ricardo Wurmus
b15a525703
gnu: Add python-biothings-client. 
* gnu/packages/bioinformatics.scm (python-biothings-client): New variable.
 2021-12-02 11:57:13 +01:00
Ricardo Wurmus
c2c63a00de
gnu: Add r-scdblfinder. 
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
 2021-12-02 10:03:07 +01:00
Leo Famulari
bef86fed3e
Revert "gnu: godot: Update to 3.4." 
This reverts commit dd4365efa1.

We reverted this commit because it broke the operation of the only
package in Guix that depends on Godot, SuperStarfighter:

https://debbugs.gnu.org/cgi/bugreport.cgi?bug=52233#20
 2021-12-02 01:27:12 -05:00
cage
934a246409
gnu: cl-tooter: Update to 1.0.0-3.ec97bee. 
* gnu/packages/lisp-xyz.scm (cl-tooter): Update to 1.0.0-3.ec97bee.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-02 00:12:58 -05:00
cage
e9e2204897
gnu: cl-i18n: Update to 0.5.1-1.4216fe9. 
* gnu/packages/lisp-xyz.scm (cl-i18n): Update to 0.5.1-1.4216fe9.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-02 00:12:57 -05:00
Andy Tai
dd4365efa1
gnu: godot: Update to 3.4. 
* gnu/packages/game-development.scm (godot): Update to 3.4.
[source]: Add new bundled dependencies to the origin snippet.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-02 00:02:47 -05:00
Leo Famulari
7a171235af
gnu: linux-libre 4.19: Update to 4.19.219. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.219.
(linux-libre-4.19-pristine-source): Update hash.
 2021-12-01 18:43:05 -05:00
Leo Famulari
6f18f35297
gnu: linux-libre 5.4: Update to 5.4.163. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.163.
(linux-libre-5.4-pristine-source): Update hash.
 2021-12-01 18:43:05 -05:00
Leo Famulari
f01588736c
gnu: linux-libre 5.10: Update to 5.10.83. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.83.
(linux-libre-5.10-pristine-source): Update hash.
 2021-12-01 18:43:05 -05:00
Leo Famulari
c3ec5eaa75
gnu: linux-libre: Update to 5.15.6. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.6.
(linux-libre-5.15-pristine-source): Update hash.
 2021-12-01 18:43:02 -05:00
Ricardo Wurmus
d53679c531
gnu: Remove couger. 
This package has been moved to the Guix Past channel.

* gnu/packages/bioinformatics.scm (couger): Remove variable.
 2021-12-02 00:32:12 +01:00
Ricardo Wurmus
cd40978a4b
gnu: randomjungle: Fix compatibility errors. 
* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase
'fix-compatibility-errors to patch type errors.
 2021-12-02 00:32:12 +01:00
Jonathan Brielmaier
205a65839a
news: Add entry about Icedove 91. 
* etc/news.scm: New entry.
 2021-12-01 22:52:02 +01:00
Jonathan Brielmaier
a63231003e
gnu: icecat: Remove leftovers of release 78. 
No longer required as icedove is now based on the 91 branch.

* gnu/packages/gnuzilla.scm (mozilla-78-compare-locales): Remove.
(all-mozilla-78-locales): Remove.
(%icecat-78-version): Remove.
(icecat-78-source): Remove.
 2021-12-01 22:07:00 +01:00
Jonathan Brielmaier
52cb5cf5b8
gnu: icedove: Update to 91.3.2. 
The profile folder moved from `~/.icedove` to `~/.thunderbird`. You may
need to migrate (copy) your profile over.

* gnu/packages/gnuzilla.scm (icedove): Update to 91.3.2.
[source]: Switch back to icecat-source.
[arguments]: `obj-x86_64-pc-linux-gnu` folder is now generated during
build, so it can't deleted in front. Remove surounding `'` from
MOZ_DEDICATED_PROFILES to follow source code. MOZ_APP_BASENAME and
MOZ_APP_DISPLAYNAME are no longer set in `comm/mail/confvars.sh`. Update
path of `customizeToolbar.js`.
Delete `'bootstrap` phase and no longer set AUTOCONF variable as the
autoconf build part was removed. Set MACH_USE_SYSTEM_PYTHON and
MOZ_APP_NAME, the latter is the binary name.
`--enable-calendar` flag got removed. Use bundled NSS until
core-updates merge.
[inputs]: Update to `icu4c-69` and `nspr-4.32`. Use bundled NSS for now.
[native-inputs]: Switch to comm-esr91 branch. Remove autoconf, add m4.
Update rust and cargo to 1.51. Use `rust-cbindgen-0.19`.
 2021-12-01 22:07:00 +01:00
Jonathan Brielmaier
f1a2e90409
gnu: Add nspr@4.32. 
Required for icecat/icedove 91.

* gnu/packages/nss.scm (nspr-4.32): New variable.
 2021-12-01 22:06:54 +01:00
Nicolas Goaziou
d7d7b57965
gnu: emacs-citar: Remove unnecessary input. 
* gnu/packages/emacs-xyz.scm (emacs-citar)[propagated-inputs]: Remove emacs-helm-bibtex.
 2021-12-01 22:00:45 +01:00
Andy Tai
2b08cc968b
gnu: bullet: Update to 3.17. 
* gnu/packages/game-development.scm (bullet): Update to 3.17.
[arguments]<#:configure-flags>: Disable access to third-party libs.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 21:54:41 +01:00
Attila Lendvai
c7c4f80881
gnu: Update Trezor support. 
* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Apply previous removal.
* gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4.
[source]: Remove now useless patch.
(python-mnemonic): Update to 0.20.
(python-trezor): Update to 0.12.4
(trezor-agent): Update to 0.11.0-1.
[source]: Add file-name field.
[arguments]: Remove trailing #T in phases.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 18:05:26 +01:00
Attila Lendvai
508200d66a
gnu: python-daemon: Update to 2.3.0. 
* gnu/packages/python-xyz.scm (python-daemon): Update to 2.3.0.
[native-inputs]: Add python-coverage and python-twine.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:58:33 +01:00
Ahmad Jarara
8cc099b425
gnu: openssh: Add support for ecdsa-sk, ed25519-sk ssh keys. 
* gnu/packages/ssh.scm (openssh)[inputs]: Add LIBFIDO2.
[arguments]: Pass "--with-security-key-builtin".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:53:27 +01:00
Ahmad Jarara
3aaef047a6
gnu: Add libfido2. 
* gnu/packages/security-token.scm (libfido2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:53:27 +01:00
Ahmad Jarara
083a710cbb
gnu: Add libcbor. 
* gnu/packages/compression.scm (libcbor): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:53:27 +01:00
Foo Chuan Wei
b5d0029771
gnu: Add vim-nerdtree. 
* gnu/packages/vim.scm (vim-nerdtree): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:53:27 +01:00
Xinglu Chen
39f4ef59ff
build-system: haskell: Add ‘hackage-uri’ procedure. 
* guix/build-system/haskell (hackage-uri): New procedure.
* guix/import/hackage.scm (hackage-module->sexp, latest-release): Use it.
* tests/hackage.scm (match-ghc-foo, match-ghc-foo-6, match-ghc-foo-revision,
match-ghc-foo-import): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:53:25 +01:00
Attila Lendvai
a955e4d7f6
gnu: Add smplayer. 
* gnu/packages/video.scm (smplayer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:51:38 +01:00
Felix Gruber
5ff34d596d
gnu: Add python-codespell. 
* gnu/packages/python-xyz.scm (python-codespell): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:51:37 +01:00
Josselin Poiret
a82e9f45fd
installer: Make LUKS2 the default format for encrypted devices 
* gnu/installer/parted.scm (luks-format-and-open): Change it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:51:37 +01:00
Josselin Poiret
4c5f970e8a
doc: Document LUKS2 GRUB support and shortcomings 
* doc/guix.texi (Keyboard Layout, Networking, and Partitioning)[Disk
Partitioning]: Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:51:37 +01:00
Josselin Poiret
adce91a3ec
gnu: system: Add LUKS2 support for the root file system. 
* gnu/bootloader/grub.scm (grub-configuration-file): Add 'insmod
luks2'.
* gnu/system/mapped-devices.scm (open-luks-device): Create
'/run/cryptsetup/' directory.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-01 17:51:37 +01:00
Ludovic Courtès
9f371f23eb
inferior: 'cached-channel-instance' does not cache unauthenticated instances. 
The comment saying that caching is fine even when AUTHENTICATE? is false
was true in commit 838ac881ec, but it
became incorrect in 7cfd789150, which
no longer calls 'latest-channel-instances' on cache hits.

* guix/inferior.scm (cached-channel-instance): Do not create CACHED when
AUTHENTICATE? is false.
 2021-12-01 17:51:33 +01:00
Guillaume Le Vaillant
1a0696e0a6
gnu: sdrangel: Add missing input. 
QtQuick is required by some runtime features.

* gnu/packages/radio.scm (sdrangel)[inputs]: Add qtquickcontrols2.
 2021-12-01 17:30:45 +01:00
jgart via Guix-patches via
e7ead42383
gnu: python-language-server: Add deprecated alias. 
* gnu/packages/python-xyz.scm (python-language-server): New variable.

Add deprecated alias for package removed in the parent commit.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:13:41 +01:00
jgart via Guix-patches via
7907ddbc3a
gnu: Add python-lsp-server. 
* gnu/packages/python-xyz.scm (python-language-server): Delete variable.
* gnu/packages/python-xyz.scm (python-lsp-server): New variable.

Removes deprecated python-language-server package and adds maintained
fork.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:13:27 +01:00
jgart via Guix-patches via
0c3acb247a
gnu: python-lsp-jsonrpc: Add deprecated alias. 
* gnu/packages/python-xyz.scm (python-jsonrpc-server): New variable.

Add deprecated alias for package removed in the parent commit.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:13:10 +01:00
jgart via Guix-patches via
869c7d6703
gnu: Add python-lsp-jsonrpc. 
* gnu/packages/python-xyz.scm (python-jsonrpc-server): Delete variable.
* gnu/packages/python-xyz.scm (python-lsp-jsonrpc): New variable.

Removes deprecated python-jsonrpc-server package and adds maintained
fork.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:12:58 +01:00
jgart
46e030764d
gnu: python-jedi: Update to 0.18.1. 
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.18.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:12:31 +01:00
jgart via Guix-patches via
6b29c3c735
gnu: python2-jedi: Remove package. 
* gnu/packages/python-xyz.scm (python2-jedi): Delete variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:10:34 +01:00
jgart via Guix-patches via
c56e9033f5
gnu: python-parso: Update to 0.8.2. 
* gnu/packages/python-xyz.scm (python-parso): Update to 0.8.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 17:10:18 +01:00
raingloom
d9956e9383
gnu: yggdrasil: Update to 0.4.1. 
* gnu/packages/networking.scm (yggdrasil): Update to 0.4.1.
* gnu/packages/patches/yggdrasil-extra-config.patch: Update for new version.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom
f3b2af2147
gnu: yggdrasil: Update to 0.4.0. 
* gnu/packages/patches/yggdrasil-extra-config.patch: Update patch.
* gnu/packages/networking.scm (yggdrasil): Update to 0.4.0.
[arguments]: Also install genkeys.
[propagated-inputs]: Remove go-github-com-cheggaaa-pb; add go-golang-org-x-sys,
go-github-com-mattn-go-runewidth, go-github-com-mattn-go-isatty,
go-github-com-fatih-color, go-github-com-cheggaaa-pb-v3,
go-github-com-vividcortex-ewma, and go-github-com-arceliar-ironwood.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom
dee3e337b6
gnu: Add go-github-com-arceliar-ironwood. 
* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom
7e4b418733
gnu: Rename go-github-com-cheggaaa-pb to go-github-com-cheggaaa-pb-v3. 
* gnu/packages/golang.scm (go-github-com-cheggaaa-pb): Rename this variable...
(go-github-com-cheggaaa-pb-v3): ...to this variable.
(go-github-com-cheggaaa-pb): New variable for deprecated package.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom
b7e774a828
gnu: go-github-com-cheggaaa-pb: Update to 3.0.8. 
* gnu/packages/golang.scm (go-github-com-cheggaaa-pb): Update to 3.0.8.
[arguments]: Disable tests; update import path.
[native-inputs]: Move go-github-com-mattn-go-isatty from here...
[propagated-inputs]: ...to here; add go-github-com-vividcortex-ewma and
go-github-com-rivo-uniseg.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom
660062a65b
gnu: Add go-github-com-mattn-go-runewidth. 
* gnu/packages/golang.scm (go-github-com-mattn-go-runewidth): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom
f3861469b6
gnu: Add go-github-com-rivo-uniseg. 
* gnu/packages/golang.scm (go-github-com-rivo-uniseg): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
raingloom
b3a9d079b8
gnu: Add go-github-com-vividcortex-ewma. 
* gnu/packages/golang.scm (go-github-com-vividcortex-ewma): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 17:03:34 +01:00
ZmnSCPxj via Guix-patches via
5ca0042116
gnu: Add python-mrkd. 
* gnu/packages/python-xyz.scm (python-mrkd): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-01 16:40:49 +01:00