TakeV/guix
1
0
Fork 0
Code Issues Pull requests Packages Projects Releases Wiki Activity
115996 commits 102 branches 35 tags 561 MiB
Commit graph

115996 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus f947aa3ac9
gnu: r-dearseq: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.12.1.
 2023-06-02 12:53:14 +02:00
Ricardo Wurmus ca0c012d4a
gnu: r-bambu: Update to 3.2.3. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.3.
 2023-06-02 12:53:14 +02:00
Ricardo Wurmus 83bd8d51c3
gnu: r-alpine: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-alpine): Update to 1.26.0.
 2023-06-02 12:53:13 +02:00
Ricardo Wurmus f4639380ae
gnu: r-anvil: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.12.3.
 2023-06-02 12:53:13 +02:00
Ricardo Wurmus c2f0ce73a7
import/cran: string->license: Add another case for GPLv3+. 
* guix/import/cran.scm (string->license): Translate "GPL (>=3)" to gpl3+.
 2023-06-02 12:52:22 +02:00
Ricardo Wurmus 4f7efc8db9
gnu: r-biocviews: Sort inputs. 
* gnu/packages/bioconductor.scm (r-biocviews)[propagated-inputs]: Sort them.
 2023-06-02 12:51:15 +02:00
Ricardo Wurmus 52546a4512
gnu: r-biocparallel: Sort inputs. 
* gnu/packages/bioconductor.scm (r-biocparallel)[propagated-inputs]: Sort
them.
 2023-06-02 12:50:47 +02:00
Ricardo Wurmus cbbb619ddb
import/cran: Libraries should not use CRAN-GUIX-NAME. 
* guix/import/cran.scm (source-dir->dependencies): Do not use CRAN-GUIX-NAME
when processing result of NEEDED-LIBRARIES-IN-DIRECTORY.
 2023-06-02 12:49:25 +02:00
Ricardo Wurmus 67183e25ad
import/cran: Also search Makevars file for libraries. 
* guix/import/cran.scm (needed-libraries-in-directory): Look at Makevars in
addition to Makevars.in for libraries.
 2023-06-02 12:48:42 +02:00
Ricardo Wurmus bb27e3b8b1
gnu: r-dismo: Replace bundled jars. 
Fixes <https://issues.guix.gnu.org/63783>.

* gnu/packages/cran.scm (r-dismo)[source]: Delete bundled jars.
[inputs]: Add java-maxent.
[native-inputs]: Add JDK and zip.
[arguments]: Add phases 'build-jars and 'strip-jar-timestamps.
 2023-06-02 11:34:17 +02:00
Ricardo Wurmus 341b4b2a97
gnu: Add java-maxent. 
* gnu/packages/bioinformatics.scm (java-maxent): New variable.
 2023-06-02 11:34:17 +02:00
Andrew Tropin 75bdd4b052
gnu: swaylock-effects: Update to 1.6.11. 
* gnu/packages/wm.scm (swaylock-effects): Update to 1.6.11.
 2023-06-02 10:47:06 +04:00
Andrew Tropin f9af75b2c3
gnu: xdg-desktop-portal-wlr: Update to 0.7.0. 
* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Update to 0.7.0.
[inputs]: Add mesa.
 2023-06-02 08:59:08 +04:00
Andrew Tropin 69c3aa561d
gnu: xdg-desktop-portal-gtk: Update to 1.14.1. 
* gnu/packages/freedesktop.scm (xdg-desktop-portal-gtk): Update to 1.14.1.
 2023-06-02 08:59:08 +04:00
Andrew Tropin 51c8e86350
gnu: xdg-desktop-portal: Update to 1.16.0. 
* gnu/packages/freedesktop.scm (xdg-desktop-portal): Update to 1.16.0.
 2023-06-02 08:59:08 +04:00
Andrew Tropin a9c8e8fd38
gnu: libportal: Update to 0.6. 
* gnu/packages/freedesktop.scm (libportal): Update to 0.6.
[arguments]: Remove deprecated backends option from #:configure-flags.  Add
set-qt-environment-variables phase.
 2023-06-02 08:59:07 +04:00
Katherine Cox-Buday 195c91b793
gnu: gopls: Update to 0.12.0. 
* gnu/packages/golang.scm (gopls): Update to 0.12.0.
 2023-06-01 23:00:44 -05:00
jgart 9dacecb111
gnu: Update waybar to 0.9.18. 
* gnu/packages/wm.scm (waybar): Update to 0.9.18.
 2023-06-01 22:59:38 -05:00
jgart ab4347a1ad
gnu: python-fire: Update to 0.5.0. 
* gnu/packages/python-xyz.scm (python-fire): Update to 0.5.0.
[inputs]: Remove python-six and python-termcolor.
[propagated-inputs]: Add python-six and python-termcolor.
 2023-06-01 22:59:38 -05:00
Ricardo Wurmus b4382b294e
gnu: Add python-colored. 
* gnu/packages/python-xyz.scm (python-colored): New variable.
 2023-06-01 20:48:17 +02:00
Ricardo Wurmus eb2918aa96
gnu: Add python-plotext. 
* gnu/packages/python-xyz.scm (python-plotext): New variable.
 2023-06-01 20:48:17 +02:00
Ricardo Wurmus d411b7d5e7
gnu: Add python-pyani. 
* gnu/packages/bioinformatics.scm (python-pyani): New variable.
 2023-06-01 20:48:17 +02:00
Ricardo Wurmus 525ef60ff4
gnu: Add python-illumina-utils. 
* gnu/packages/bioinformatics.scm (python-illumina-utils): New variable.
 2023-06-01 20:48:17 +02:00
Efraim Flashner cf388642ce
gnu: libtommath: Honor the #:tests? flag. 
* gnu/packages/multiprecision.scm (libtommath)[arguments]: Adjust custom
'check phase to honor the #:tests? flag.
 2023-06-01 15:52:37 +03:00
Efraim Flashner b428b49d8f
gnu: libtommath: Prevent possible integer overflow. 
* gnu/packages/multiprecision.scm (libtommath)[source]: Add patch.
* gnu/packages/patches/libtommath-integer-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2023-06-01 15:52:37 +03:00
Efraim Flashner 7c52ae295b
gnu: bear: Update to 3.1.2. 
* gnu/packages/build-tools.scm (bear): Update to 3.1.2.
 2023-06-01 15:24:23 +03:00
Ricardo Wurmus ced6e0fe94
gnu: Add python-ete3. 
* gnu/packages/bioinformatics.scm (python-ete3): New variable.
 2023-06-01 14:10:04 +02:00
Andy Tai e6705f994f
gnu: parallel: Update to 20230522. 
* gnu/packages/parallel.scm (parallel): Update to 20230522.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:55:09 +03:00
Greg Hogan 9511488941
gnu: zenity: Update to 3.44.1. 
* gnu/packages/gnome.scm (zenity): Update to 3.44.1.
[native-inputs]: Add gtk+:bin.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:44:58 +03:00
Greg Hogan 21388dce63
gnu: iperf: Update to 3.13. 
* gnu/packages/networking.scm (iperf): Update to 3.13.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:42:43 +03:00
Greg Hogan 3ab95b2753
gnu: iotop: Update to 1.23. 
* gnu/packages/linux.scm (iotop): Update to 1.23.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:41:37 +03:00
Greg Hogan fd76ffb974
gnu: html-xml-utils: Update to 8.6. 
* gnu/packages/xml.scm (html-xml-utils): Update to 8.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:39:58 +03:00
Greg Hogan e6fb7f6467
gnu: hstr: Update to 3.1. 
* gnu/packages/shellutils.scm (hstr): Update to 3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:38:13 +03:00
Greg Hogan dc61b7fcf7
gnu: glances: Update to 3.4.0.3. 
* gnu/packages/python-xyz.scm (glances): Update to 3.4.0.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:36:35 +03:00
Greg Hogan f7d5722d36
gnu: fish: Update to 3.6.1. 
* gnu/packages/shells.scm (fish): Update to 3.6.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:18:31 +03:00
Greg Hogan 247ac4b73f
gnu: fio: Update to 3.35. 
* gnu/packages/benchmark.scm (fio): Update to 3.35.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:15:01 +03:00
Greg Hogan dc6afa69eb
gnu: atop: Update to 2.9.0. 
* gnu/packages/admin.scm (atop): Update to 2.9.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-06-01 12:13:08 +03:00
Efraim Flashner 4abf0af4b1
gnu: openblas: Update make-flags comments and coding style. 
* gnu/packages/maths.scm (openblas)[arguments]: In the make-flags use
the target-* macros. Adjust the wording describing why the different
architectures have the flags they do.
 2023-06-01 11:14:03 +03:00
Efraim Flashner 076688fa1e
gnu: openblas: Update architectures we provide substitutes for. 
* gnu/packages/maths.scm (openblas)[arguments]: Adjust the substitutable?
flag to only not provide substitutes when building for powerpc-linux.
Adjust the comment accordingly.
 2023-06-01 11:14:03 +03:00
Efraim Flashner 872e1434f1
gnu: openblas-ilp64: Add powerpc64le-linux as a supported system. 
* gnu/packages/maths.scm (openblas-ilp64)[supported-systems]: Add
powerpc64le-linux.
 2023-06-01 11:14:03 +03:00
Ricardo Wurmus 93804e978f
gnu: r-mbecs: Fix indentation. 
* gnu/packages/bioconductor.scm (r-mbecs)[arguments]: Adjust indentation and
spelling of comment.
 2023-06-01 09:21:57 +02:00
Ricardo Wurmus d019053aca
gnu: Add squashfuse. 
* gnu/packages/file-systems.scm (squashfuse): New variable.
 2023-06-01 09:15:26 +02:00
Mădălin Ionel Patrașcu 10d3f8aa7b
gnu: Add r-mbecs. 
* gnu/packages/bioconductor.scm (r-mbecs): New variable.
 2023-06-01 09:15:26 +02:00
Leo Famulari 13e2138c23
gnu: Remove linux-libre 6.2. 
This kernel series is no longer supported upstream.

* gnu/packages/linux.scm (linux-libre-6.2-version, linux-libre-6.2-gnu-revision,
deblob-scripts-6.2, linux-libre-6.2-pristine-source, linux-libre-6.2-source,
linux-libre-headers-6.2, linux-libre-6.2): Remove variables.
* gnu/packages/aux-files/linux-libre/6.2-arm.conf,
gnu/packages/aux-files/linux-libre/6.2-arm64.conf,
gnu/packages/aux-files/linux-libre/6.2-i686.conf,
gnu/packages/aux-files/linux-libre/6.2-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
 2023-05-31 21:21:25 -04:00
Leo Famulari 35bdf804cb
gnu: linux-libre 4.14: Update to 4.14.316. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.316.
(linux-libre-4.14-pristine-source): Update hash.
 2023-05-31 21:21:25 -04:00
Leo Famulari c428ed520d
gnu: linux-libre 4.19: Update to 4.19.284. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.284.
(linux-libre-4.19-pristine-source): Update hash.
 2023-05-31 21:21:24 -04:00
Leo Famulari 1bd5d06736
gnu: linux-libre 5.4: Update to 5.4.244. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.244.
(linux-libre-5.4-pristine-source): Update hash.
 2023-05-31 21:21:24 -04:00
Leo Famulari a939d7cfee
gnu: linux-libre 5.10: Update to 5.10.181. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.181.
(linux-libre-5.10-pristine-source): Update hash.
 2023-05-31 21:21:24 -04:00
Leo Famulari 9ab028e70e
gnu: linux-libre 5.15: Update to 5.15.114. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.114.
(linux-libre-5.15-pristine-source): Update hash.
 2023-05-31 21:21:23 -04:00
Leo Famulari 876486476a
gnu: linux-libre 6.1: Update to 6.1.31. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.31.
(linux-libre-6.1-pristine-source): Update hash.
 2023-05-31 21:21:23 -04:00