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113249 commits

Author SHA1 Message Date
Lars-Dominik Braun 89acc4d5c6
gnu: r-mixedpower: Update to b2b87068.
* gnu/packages/statistics.scm (r-mixedpower): Update to commit
b2b87068546327d8f592d141e5482e0478c1b2ee, remove patch.
* gnu/packages/patches/r-mixedpower-r2power.patch: Remove file.
* gnu/local.mk: Unregister it.
2023-04-17 11:55:30 +02:00
Guillaume Le Vaillant 1c86be2fd6
gnu: mysql: Fix build.
The version of mysql currently packaged doesn't support openssl-3.

* gnu/packages/databases.scm (mysql)[inputs]: Replace openssl by openssl-1.1.
2023-04-17 11:55:12 +02:00
Guillaume Le Vaillant c0723849b5
gnu: cl-burgled-batteries3: Fix build.
* gnu/packages/lisp-xyz.scm (sbcl-burgled-batteries3)[arguments]: Rename
  'adjust-for-python-3.9' phase to 'adjust-for-python-3.10' and update it.
2023-04-17 11:41:39 +02:00
Kyle Andrews a117510a8c
gnu: Add r-littler.
* gnu/packages/cran.scm (r-littler): New variable.
2023-04-17 11:35:29 +02:00
Guillaume Le Vaillant b6ffcc4de4
gnu: cl-ana: Fix build.
* gnu/packages/lisp-xyz.scm (sbcl-cl-ana)[arguments]: Use gexp. Update
  'fix-paths' phase. Add 'fix-newer-hdf5-compatibility' phase.
2023-04-17 11:28:45 +02:00
Guillaume Le Vaillant a2ed9816c9
gnu: cl-hdf5-cffi: Fix build.
* gnu/packages/lisp-xyz.scm (sbcl-hdf5-cffi)[inputs]: Remove labels.
  [arguments]: Use gexp, add 'fix-newer-hdf5-compatibility' phase.
2023-04-17 11:16:58 +02:00
Navid Afkhami b95cd3f969
gnu: Add r-demuxmix.
* gnu/packages/bioinformatics.scm (r-demuxmix): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-17 11:16:30 +02:00
Navid Afkhami 2b2068a083
gnu: Add r-demultiplex2.
* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-17 11:14:30 +02:00
Ricardo Wurmus 83fb491e44
gnu: r-simr: Update to 1.0.7.
* gnu/packages/statistics.scm (r-simr): Update to 1.0.7.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus eee0b6075a
gnu: r-quantreg: Update to 5.95.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.95.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus 8159838e81
gnu: r-deoptimr: Update to 1.0-12.
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-12.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus 303acb3a0b
gnu: r-segmented: Update to 1.6-4.
* gnu/packages/statistics.scm (r-segmented): Update to 1.6-4.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus 7e80f058ca
gnu: r-git2r: Update to 0.32.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.32.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 5507db7ee0
gnu: r-markdown: Update to 1.6.
* gnu/packages/statistics.scm (r-markdown): Update to 1.6.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus ca6f22f63b
gnu: r-stars: Update to 0.6-1.
* gnu/packages/cran.scm (r-stars): Update to 0.6-1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 68355cf37b
gnu: r-seqminer: Update to 8.9.
* gnu/packages/cran.scm (r-seqminer): Update to 8.9.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 853fd0f2c3
gnu: r-parsnip: Update to 1.1.0.
* gnu/packages/cran.scm (r-parsnip): Update to 1.1.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 648f92a434
gnu: r-workflowsets: Update to 1.0.1.
* gnu/packages/cran.scm (r-workflowsets): Update to 1.0.1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d2d6ea993e
gnu: r-tune: Update to 1.1.1.
* gnu/packages/cran.scm (r-tune): Update to 1.1.1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d495c46698
gnu: r-igraph: Update to 1.4.2.
* gnu/packages/cran.scm (r-igraph): Update to 1.4.2.
[propagated-inputs]: Add r-cpp11.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 075a045b41
gnu: r-confintr: Update to 1.0.0.
* gnu/packages/cran.scm (r-confintr): Update to 1.0.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 679c78ed51
gnu: r-spatstat-linnet: Update to 3.1-0.
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 3113ee8bba
gnu: r-rstanarm: Update to 2.21.4.
* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.4.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d8e3aa95a0
gnu: r-quanteda: Update to 3.3.0.
* gnu/packages/cran.scm (r-quanteda): Update to 3.3.0.
[propagated-inputs]: Add r-jsonlite.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 374639c34a
gnu: r-qqconf: Update to 1.3.2.
* gnu/packages/cran.scm (r-qqconf): Update to 1.3.2.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 6655a2af0f
gnu: r-terra: Update to 1.7-23.
* gnu/packages/cran.scm (r-terra): Update to 1.7-23.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus b039d0a7c4
gnu: r-enrichr: Update to 3.2.
* gnu/packages/cran.scm (r-enrichr): Update to 3.2.
[propagated-inputs]: Add r-writexls.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 776154da00
gnu: r-scs: Update to 3.2.4.
* gnu/packages/cran.scm (r-scs): Update to 3.2.4.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 185bb03286
gnu: r-rms: Update to 6.6-0.
* gnu/packages/cran.scm (r-rms): Update to 6.6-0.
[propagated-inputs]: Remove r-lattice; add r-kableextra and r-knitr.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus b9d6b88a33
gnu: r-compositions: Update to 2.0-6.
* gnu/packages/cran.scm (r-compositions): Update to 2.0-6.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 39d2ed401f
gnu: r-gargle: Update to 1.4.0.
* gnu/packages/cran.scm (r-gargle): Update to 1.4.0.
[propagated-inputs]: Remove r-rstudioapi.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 51ae3aabee
gnu: r-performance: Update to 0.10.3.
* gnu/packages/cran.scm (r-performance): Update to 0.10.3.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 726b352cec
gnu: r-bayestestr: Update to 0.13.1.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.13.1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 2a1de6dc13
gnu: r-multcompview: Update to 0.1-9.
* gnu/packages/cran.scm (r-multcompview): Update to 0.1-9.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 367ea059e9
gnu: r-ggformula: Update to 0.10.4.
* gnu/packages/cran.scm (r-ggformula): Update to 0.10.4.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus b0d707eda6
gnu: r-labelled: Update to 2.11.0.
* gnu/packages/cran.scm (r-labelled): Update to 2.11.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus f31eb37d5b
gnu: r-renv: Update to 0.17.3.
* gnu/packages/cran.scm (r-renv): Update to 0.17.3.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d9cef2c152
gnu: r-quantmod: Update to 0.4.22.
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.22.
[propagated-inputs]: Add r-jsonlite.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 1127830d3a
gnu: r-jomo: Update to 2.7-6.
* gnu/packages/cran.scm (r-jomo): Update to 2.7-6.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 5df24ec454
gnu: r-partykit: Update to 1.2-20.
* gnu/packages/cran.scm (r-partykit): Update to 1.2-20.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 832d7a8908
gnu: r-zoo: Update to 1.8-12.
* gnu/packages/cran.scm (r-zoo): Update to 1.8-12.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus aa24b1c17c
gnu: r-v8: Update to 4.3.0.
* gnu/packages/cran.scm (r-v8): Update to 4.3.0.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 0ef30039bb
gnu: r-torch: Update to 0.10.0.
* gnu/packages/cran.scm (r-torch): Update to 0.10.0.
[propagated-inputs]: Add r-desc.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 7b3c9cbb52
gnu: python-pytorch-for-r-torch: Update to 1.13.1.
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Update to
1.13.1.
[source]: Adjust RUNPATH in snippet.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 93825a326c
gnu: liblantern: Update to 0.10.0.
* gnu/packages/machine-learning.scm (liblantern): Update to 0.10.0.
[arguments]: Adjust build phase.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus ea6d2582c8
gnu: cpuinfo: Update to 0.0-2.53298db.
* gnu/packages/parallel.scm (cpuinfo): Update to 0.0-2.53298db.
[arguments]: Disable one test.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 96f3c7504a
gnu: Add r-writexls.
* gnu/packages/cran.scm (r-writexls): New variable.
2023-04-17 11:11:15 +02:00
Efraim Flashner b2bc0ecb29
gnu: python-outcome: Update to 1.2.0.
* gnu/packages/python-xyz.scm (python-outcome): Update to 1.2.0.
[propagated-inputs]: Remove python-async-generator.
2023-04-17 11:15:58 +03:00
Efraim Flashner bd0b398b67
gnu: python-jeepney: Update to 0.8.0.
* gnu/packages/python-crypto.scm (python-jeepney): Update to 0.8.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-async-timeout, python-pytest-asyncio,
python-flit-core. Remove python-tornado.
2023-04-17 11:13:26 +03:00
Efraim Flashner 929995a542
gnu: python-secretstorage: Update to 3.3.3.
* gnu/packages/python-crypto.scm (python-secretstorage): Update to 3.3.3.
2023-04-17 11:12:45 +03:00