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127063 commits

Author SHA1 Message Date
Ricardo Wurmus a05f9cbab2
gnu: r-gcrma: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.74.0.

Change-Id: If9e27c7f36d132e71c24900cfaf052817510faea
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 8d91d64009
gnu: r-yapsa: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.28.0.

Change-Id: I5e3e4f3136a4a490cedb45b88d4879cfd210e249
2023-11-03 22:49:22 +01:00
Ricardo Wurmus d3550856ab
gnu: r-somaticsignatures: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.38.0.

Change-Id: If54820695dbbe0b8940f4f9b9e8e0bdd5268e0ed
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 5072f0664c
gnu: r-gtrellis: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.34.0.

Change-Id: Iab26e32c78943d713f889ccec1d1af863b9daa7e
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 0ba77ac5ae
gnu: r-yamss: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.28.0.

Change-Id: I7045aee52aeabb0605249f6da52dc362c4399d04
2023-11-03 22:49:22 +01:00
Ricardo Wurmus ec2cd3861c
gnu: r-ebimage: Update to 4.44.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.44.0.

Change-Id: If431ef62ecf9f710394d285fb15ebb52e4cab80c
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 23c25f0423
gnu: r-aucell: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.24.0.

Change-Id: Ic0f65a553dc0ea84db788621367815882b592b27
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 0eb64979aa
gnu: r-allelicimbalance: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.40.0.

Change-Id: I89a4410e142a0f00942765d98fa1a8ba27706c75
2023-11-03 22:49:22 +01:00
Ricardo Wurmus b107aaf47a
gnu: r-annotationtools: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.76.0.

Change-Id: I19bd7902041d29c1cd94e31a178259f51e6d4a25
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 29a09dbdef
gnu: r-gofuncr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.0.

Change-Id: Ic00366af82dd07fafe0483e37a9522f7a472ff6a
2023-11-03 22:49:22 +01:00
Ricardo Wurmus e632f73afc
gnu: r-atacseqqc: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.26.0.

Change-Id: I1023d6731c837dd64a232c73520e81a4389ee1a0
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 7fe9a89707
gnu: r-genomicscores: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.1.

Change-Id: I39d27518b7ccbc5511d3aeb12bc16436889ffb36
2023-11-03 22:49:22 +01:00
Ricardo Wurmus dea0576013
gnu: r-motifbreakr: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.16.0.

Change-Id: I89e726ac4e415a80afca1e415c355a94752b8a47
2023-11-03 22:49:22 +01:00
Ricardo Wurmus 01612dd2a6
gnu: r-motifdb: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.44.0.

Change-Id: Iff85aa4dd21c45eac09920cb77400b934caa0988
2023-11-03 22:49:22 +01:00
Ricardo Wurmus e4772226b3
gnu: r-rgadem: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.50.0.

Change-Id: Ie41481841a070484dec3beaa146deab99508c348
2023-11-03 22:49:21 +01:00
Ricardo Wurmus d9ba7e918e
gnu: r-bacon: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.30.0.

Change-Id: I31555dc9dc0502224543902c7b6eb364b9ce7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 0282bb3aa6
gnu: r-abseqr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.20.0.

Change-Id: Id4fea6a81954388c46417e1de5ea5c3b54b60025
2023-11-03 22:49:21 +01:00
Ricardo Wurmus d478ba2bfb
gnu: r-a4: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.0.

Change-Id: I23de20743d631b3ef3b18707d1c3c1cae67108be
2023-11-03 22:49:21 +01:00
Ricardo Wurmus d69276f7e2
gnu: r-a4base: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.50.0.

Change-Id: I5c2ecfe6e888af18fced6571461b4278a1e188fe
2023-11-03 22:49:21 +01:00
Ricardo Wurmus c6ad1d6186
gnu: r-a4reporting: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.50.0.

Change-Id: Ifb88020fcd8812937e1d4cf2d63f7e2141285c5a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus c5a7e436a4
gnu: r-a4preproc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.50.0.

Change-Id: I2b73b3e793131c8d07258bb5f3c0e1304f8b788f
2023-11-03 22:49:21 +01:00
Ricardo Wurmus b89491fcfb
gnu: r-a4classif: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.50.0.

Change-Id: Ib9624648a85cd945eeb4de4f78b1d3c214b3efc4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 17290efded
gnu: r-a4core: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.50.0.

Change-Id: I94addc286eca817db8220eaa83b69742c89f0b25
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 7e82848893
gnu: r-annaffy: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.74.0.

Change-Id: Ib9e106212783df75fbc03eea51d1c768720f0340
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 97a6b7b971
gnu: r-mlinterfaces: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.82.0.

Change-Id: I1c2812f02206e6026ca4b133f46bb45e45c5d827
2023-11-03 22:49:21 +01:00
Ricardo Wurmus c7d59ff365
gnu: r-clusterexperiment: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.22.0.

Change-Id: I79d2df6fb405ec2870363fd9f63d6d72a3c17b5d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus c112d7bdf0
gnu: r-clusterprofiler: Update to 4.10.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.0.
[propagated-inputs]: Add r-httr and r-igraph.

Change-Id: I87ea2a45b028483551ba936030f002d4bf1d97f0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 5342489b80
gnu: r-enrichplot: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.22.0.

Change-Id: I68187ecaeb0530cd5a6e8f80663a3428dd019f0a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 109a63f7b8
gnu: r-enrichedheatmap: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.32.0.

Change-Id: I9fb9f51ff7c386d0beaec6c1e5384b48c7a9a4ad
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 9dcb82f7e7
gnu: r-dose: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.0.
[propagated-inputs]: Add r-hpo-db and r-mpo-db.

Change-Id: I6c64242cf13cd30274024727571dc0ae7cbc0c94
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 77f4a907b3
gnu: r-fgsea: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.28.0.

Change-Id: I32e23fb87f56f9013fe0505c0068a70ce2afa371
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 7cca324d3b
gnu: r-fcscan: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.16.0.

Change-Id: I2ea797017fdca22b7aa08b26f5e8f7d9d75de5d5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 27dd42cc07
gnu: r-anota2seq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.24.0.

Change-Id: I2b0d13fee4644e88828d47562bd2bae5d290fbb3
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 520fc2a345
gnu: r-anota: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.50.0.

Change-Id: Ie9b856c11a181edbf6b7d349a7cdc67eb201dbd0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus b3f89195e9
gnu: r-gosemsim: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I039ed379e9fa3870bd40a68dbfd6446ca35dafc0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus aa61c81823
gnu: r-heatplus: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.10.0.

Change-Id: I753528f67b5b7e3640a6e59caac755fcd755b5c5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus c3d0f015cf
gnu: r-varianttools: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.44.0.

Change-Id: Ib9dc77f1ba4962d9cbb8cad7ebb8026d8e124ffa
2023-11-03 22:49:21 +01:00
Ricardo Wurmus db11b1bbe0
gnu: r-tradeseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.16.0.

Change-Id: I65377ca43aa3075f7ce401494f1a335b3302306d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 5c7985b3b7
gnu: r-ioniser: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.26.0.

Change-Id: I19866002eb8259be80d4f3541fd37020af802f39
2023-11-03 22:49:21 +01:00
Ricardo Wurmus f1c930495b
gnu: r-linnorm: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.26.0.

Change-Id: Ie39f7252178e41bcd103ea8a6c857992eeed7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 038df629a9
gnu: r-lumi: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.54.0.

Change-Id: I74cb1e60a1ba2e9c62b412eec51b71c9b19aa8c7
2023-11-03 22:49:21 +01:00
Ricardo Wurmus e55a61949e
gnu: r-lefser: Update to 1.11.5.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.11.5.

Change-Id: I30883461fef45b2e535175c8534276372e1ef9e4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus e6f93e58c9
gnu: r-methylumi: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.48.0.

Change-Id: Ie17336e7bbfe5b9c74beb3887596d2993adbfb4c
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 8dc6103399
gnu: r-missmethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.36.0.

Change-Id: I94d8bedcc262015a50d865191f0d4c70d96e77af
2023-11-03 22:49:21 +01:00
Ricardo Wurmus f7152456ee
gnu: r-minfi: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.48.0.

Change-Id: Iac319a3da6a8a434517e9286a8753cef7113c4c7
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 3bc5dbe892
gnu: r-milor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 1.10.0.

Change-Id: I20c89307a59ab7659a35fc1c5c4f2c5c10cf7181
2023-11-03 22:49:20 +01:00
Ricardo Wurmus a997efca8c
gnu: r-microbiome: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.24.0.

Change-Id: Ifca782fec5346f00a866daaaf10760a962e5a36e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus c192f994c4
gnu: r-mia: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.10.0.
[propagated-inputs]: Add r-bluster and r-matrixgenerics.

Change-Id: I667de5184501a283f1090f3e49cd796537177882
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 919fad614e
gnu: r-bumpymatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.10.0.

Change-Id: I9ce9b6d0e765dcef1ef9b7eaa8ceadca19ba66f3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus e2f2927666
gnu: r-bumphunter: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.44.0.

Change-Id: I259937e8d0e7934986b174b0607411ffe1e62bde
2023-11-03 22:49:20 +01:00