Commit graph

52052 commits

Author SHA1 Message Date
Ricardo Wurmus
6339ea22f1
gnu: r-annotationhub: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.18.0.
[propagated-inputs]: Add r-biocversion.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
c21bf901e2
gnu: r-fastseg: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.32.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
fedba48bb5
gnu: r-keggrest: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.26.1.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
b342b20a24
gnu: r-gage: Update to 2.36.0.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.36.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
48c7ee93b7
gnu: r-genomicfiles: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.22.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
dac706c322
gnu: r-complexheatmap: Update to 2.2.0.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.2.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
2edb116c1c
gnu: r-dirichletmultinomial: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.28.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e107f3df54
gnu: r-ensembldb: Update to 2.10.2.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.10.2.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e89032667d
gnu: r-organismdbi: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.28.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
866810e686
gnu: r-biovizbase: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.34.1.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
81600df302
gnu: r-ggbio: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.34.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
89a41696ab
gnu: r-gqtlbase: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.18.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
67d4fd523d
gnu: r-erma: Update to 1.2.0.
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.2.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
14eb0978a8
gnu: r-snpstats: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.36.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
6fff104191
gnu: r-ldblock: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.16.0.
[propagated-inputs]: Remove r-go-db and r-homo-sapiens.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
cfa93a30b4
gnu: r-gqtlstats: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.18.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
d57b6b4bae
gnu: r-gviz: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
2e13f10e89
gnu: r-sushi: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.24.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
28329991b0
gnu: r-gwascat: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.18.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
0a16021241
gnu: r-hitc: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.30.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
8db2915900
gnu: r-fithic: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.12.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
7557bd0cce
gnu: r-hdf5array: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.1.
[propagated-inputs]: Add r-matrix.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
1f5d262cfd
gnu: r-rhdf5lib: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.8.0.
[arguments]: Update patches.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
8804e4b48e
gnu: r-beachmat: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.2.1.
[propagated-inputs]: Add r-matrix.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
376f2f35b6
gnu: r-singlecellexperiment: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.8.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
bf23416fe1
gnu: r-scater: Update to 1.14.5.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.14.5.
[propagated-inputs]: Remove r-dplyr.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
964634fa44
gnu: r-scran: Update to 1.14.5.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.5.
[propagated-inputs]: Remove r-dynamictreecut.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
c81ccd3076
gnu: r-delayedmatrixstats: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.8.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
758dfc61ee
gnu: r-mzid: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.24.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
dc9d4832b9
gnu: r-vsn: Update to 3.54.0.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.54.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
af87ac3aa7
gnu: r-annotationfilter: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.10.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
43058ca656
gnu: r-chipseq: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.36.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
746e1f062e
gnu: r-copywriter: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.18.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
32f6059635
gnu: r-affy: Update to 1.64.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.64.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
51ca216bdf
gnu: r-affyio: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.56.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
065c305ca5
gnu: r-methylkit: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.12.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2a6ce98b17
gnu: r-sva: Update to 3.34.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.34.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
d12328f9fe
gnu: r-protgenerics: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.18.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
3381dc4b5c
gnu: r-mzr: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.20.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
418d72142c
gnu: r-illuminaio: Update to 0.28.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
db85744ef3
gnu: r-geoquery: Update to 2.54.1.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
048a43d6a5
gnu: r-scone: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2f223b2115
gnu: r-scdd: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
81a125cdb6
gnu: r-noiseq: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
9732e690a5
gnu: r-monocle: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
dc5237f85e
gnu: r-mast: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
a5cc1f104b
gnu: r-icobra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
0383bd05ce
gnu: r-ihw: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
153dc51bfe
gnu: r-lpsymphony: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
a9649c4138
gnu: r-ebseq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
2019-12-15 15:38:55 +01:00