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81354 commits

Author SHA1 Message Date
Chris Marusich bcdc13454c
gnu: check: Fix failing tests on powerpc64le-linux.
Fixes <https://bugs.gnu.org/47698>.

* gnu/packages/check.scm (check)[source]: Apply unreleased upstream commit
4fbe702 as a patch.
2021-06-18 11:06:56 -07:00
Ludovic Courtès caf4a7a277
gnu: curl@7.77.0: Provide a correct TLS priority string.
Fixes <https://bugs.gnu.org/49035>.

* gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/curl.scm (curl-7.77.0)[source]: Use it.
2021-06-18 17:40:10 +02:00
Xinglu Chen 299c3c1860
gnu: dune-bootstrap: Update to 2.8.5.
* gnu/packages/ocaml.scm (dune-bootstrap): Update to 2.8.5.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-18 14:33:10 +02:00
Andrew Tropin 2ef71b66f3
gnu: xdg-desktop-portal-wlr: Update to 0.4.0.
* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Update to 0.4.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-18 14:24:11 +02:00
Andrew Tropin 7625242d74
gnu: xdg-desktop-portal: Update to 1.8.1 and honor XDG_DESKTOP_PORTAL_DIR.
* gnu/packages/freedesktop.scm (xdg-desktop-portal): Update to 1.8.1.
[arguments, native-search-paths]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-18 14:23:41 +02:00
Andrew Tropin d0d948e393
gnu: pipewire: Update to 0.3.29.
* gnu/packages/linux.scm (pipewire): Update to 0.3.29.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-18 14:20:31 +02:00
Ludovic Courtès b5b9266e40
doc: Clarify Git commit signing; fix typo.
Suggested by Maxime Devos <maximedevos@telenet.be>
and Julien Lepiller <julien@lepiller.eu>.

* doc/contributing.texi (Commit Access): Clarify Git commit signing
setup and fix typo.
2021-06-18 14:18:07 +02:00
Ludovic Courtès d3d6d1c6eb
doc: Explain more reasons for commit revocation.
* doc/contributing.texi (Commit Revocation): Expound.
2021-06-18 14:18:07 +02:00
Ludovic Courtès d475134245
doc: Add "Addressing Issues" section.
* doc/contributing.texi (Addressing Issues): New section.

Co-authored-by: Christopher Baines <mail@cbaines.net>
2021-06-18 14:18:07 +02:00
Ludovic Courtès aaf4a0090f
doc: Structure the "Commit Access" section.
* doc/contributing.texi (Commit Access): Add introduction and section
heading.  Separate OpenPGP setup from commit policy.
2021-06-18 14:18:07 +02:00
Ludovic Courtès 01f5795578
profiles: Add "XAUTHORITY" to the precious variables.
Suggested by Maxime Devos <maximedevos@telenet.be>.

* guix/profiles.scm (%precious-variables): Add "XAUTHORITY".
2021-06-18 14:18:07 +02:00
Ludovic Courtès ee61777a32
profiles: Add 'load-profile'.
* guix/profiles.scm (%precious-variables): New variable.
(purify-environment, load-profile): New procedures.
* guix/scripts/environment.scm (%precious-variables)
(purify-environment, create-environment): Remove.
(launch-environment): Call 'load-profile' instead of 'create-environment'.
* tests/profiles.scm ("load-profile"): New test.
2021-06-18 14:18:07 +02:00
Ludovic Courtès c5b1b48f09
lint: check-patch-headers: Recognize Git diffs.
* guix/lint.scm (check-patch-headers): Add "diff --git " prefix.
2021-06-18 14:18:06 +02:00
Ludovic Courtès 003728cfab
build: Remove Guile 2.2 workaround.
* build-aux/compile-all.scm <top level>: Remove Guile 2.2 workaround.
2021-06-18 14:18:06 +02:00
Ludovic Courtès f371972e78
import: launchpad: Gracefully handle 404s from api.launchpad.net.
Fixes <https://bugs.gnu.org/49031>.
Reported by Emad Alblueshi <emad.albloushi@gmail.com>.

* guix/import/launchpad.scm (latest-released-version): Gracefully handle
'json-fetch' returning #f.
2021-06-18 14:18:06 +02:00
Arun Isaac bccf2a9e25
gnu: python-miniboa: Update to 1.0.8.
* gnu/packages/python-xyz.scm (python-miniboa): Update to 1.0.8.
2021-06-18 17:09:52 +05:30
Christopher Baines ba575ee814
gnu: guix: Update to 4985a42.
* gnu/packages/package-management.scm (guix): Update to 4985a42.
2021-06-18 12:36:54 +01:00
Paul A. Patience 8bf2e237f8
gnu: Iosevka fonts: Update to 7.0.3.
* gnu/packages/fonts.scm (font-iosevka, font-iosevka-slab,
font-iosevka-term, font-iosevka-term-slab, font-iosevka-aile,
font-iosevka-curly, font-iosevka-curly-slab, font-iosevka-etoile):
Update to 7.0.3.
(font-iosevka-sparkle): Delete variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 13:27:34 +02:00
Boris A. Dekshteyn aec8dfd37b
gnu: lib2geom: Update to commit b29d60e4.
* gnu/packages/graphics.scm (lib2geom): Update to commit
b29d60e49a58f4e8069544b44863b1a623e4ee59 (with inkscape 1.1 relased).
2021-06-18 13:12:22 +02:00
Boris A. Dekshteyn 624a6b60b5
gnu: inkscape: Update to version 1.1.
* gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/inkscape.scm (inkscape-1.0) Rename to inkscape-1.1.
* gnu/packages/inkscape.scm (inkscape-1.1) Update to version 1.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 13:12:17 +02:00
Christopher Baines 4985a42724
Start enabling substitutes from bordeaux.guix.gnu.org.
In addition to substitutes from ci.guix.gnu.org.  There are more changes that
can be made in the future, but these changes seem like a good start.

* config-daemon.ac (guix_substitute_urls): Add https://bordeaux.guix.gnu.org.
* guix/scripts/substitute.scm (%default-substitute-urls): Add
http://bordeaux.guix.gnu.org.
* guix/store.scm (%default-substitute-urls): Add bordeaux.guix.gnu.org.
* doc/guix.texi: Adjust accordingly.
* doc/contributing.texi: Adjust accordingly.
2021-06-18 11:25:41 +01:00
Sarah Morgensen via Guix-patches via 555d14eba7
gnu: Add font-overpass.
* gnu/packages/fonts.scm (font-overpass): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 12:13:23 +02:00
Niklas Eklund 93db7fa739
gnu: Add xkb-switch.
* gnu/packages/xdisorg.scm (xkb-switch): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 12:08:04 +02:00
Niklas Eklund d4b86bac97
gnu: Add emacs-flycheck-package.
*  gnu/emacs-xyz.scm (emacs-flycheck-package): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 12:01:17 +02:00
Xinglu Chen d640ae44e8
gnu: Add emacs-package-build.
* gnu/packages/emacs-xyz.scm (emacs-package-build): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 11:59:52 +02:00
Nicolas Goaziou 9f1d2085df
gnu: giac: Update to 1.7.0-13.
* gnu/packages/algebra.scm (giac): Update to 1.7.0-13.
2021-06-18 11:54:06 +02:00
Nicolas Goaziou ee87b296a0
gnu: emacs-evil-matchit: Update to 2.3.12.
* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.3.12.
2021-06-18 11:16:29 +02:00
Nicolas Goaziou da40346d43
gnu: emacs-org-ql: Update to 0.5.2.
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.5.2.
[arguments]<#:phases>: Remove unnecessary #t.
2021-06-18 11:14:53 +02:00
Nicolas Goaziou 057373348d
gnu: emacs-epkg: Update to 3.3.1.
* gnu/packages/emacs-xyz.scm (emacs-epkg): Update to 3.3.1.
2021-06-18 11:08:35 +02:00
Nicolas Goaziou 1dabaf2fa0
gnu: emacs-closql: Update to 1.0.6.
* gnu/packages/emacs-xyz.scm (emacs-closql): Update to 1.0.6.
2021-06-18 11:08:29 +02:00
Nicolas Goaziou eab1e95fbc
gnu: emacs-forge: Update to 0.2.1.
* gnu/packages/emacs-xyz.scm (emacs-forge): Update to 0.2.1.
2021-06-18 11:03:45 +02:00
Nicolas Goaziou 31c86c9f2e
gnu: emacs-transient: Update to 0.3.5.
* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.5.
2021-06-18 11:01:46 +02:00
Nicolas Goaziou 4ac70d0208
gnu: thinkfan: Update to 1.2.2.
* gnu/packages/linux.scm (thinkfan): Update to 1.2.2.
2021-06-18 10:55:19 +02:00
Nicolas Goaziou a7f31ef118
gnu: tectonic: Update to 0.6.4.
* gnu/packages/rust-apps.scm (tectonic): Update to 0.6.4.
2021-06-18 10:49:49 +02:00
Nicolas Goaziou ea68ce80c9
gnu: emacs-emms: Update to 7.4.
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 7.4.
2021-06-18 10:48:59 +02:00
Nicolas Goaziou 204fae3bdf
gnu: emacs-posframe: Update to 1.0.4.
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.4.
2021-06-18 10:47:14 +02:00
Nicolas Goaziou d7fe0414fc
gnu: tectonic: Update to 0.6.2.
* gnu/packages/rust-apps.scm (tectonic): Update to 0.6.2.
2021-06-17 19:33:34 +02:00
Ricardo Wurmus ef5468ff0e
gnu: Add r-chicago.
* gnu/packages/bioconductor.scm (r-chicago): New variable.
2021-06-17 14:57:47 +02:00
Ricardo Wurmus 7b199d8360
gnu: Add r-delaporte.
* gnu/packages/cran.scm (r-delaporte): New variable.
2021-06-17 14:57:26 +02:00
Ricardo Wurmus 88d8b4ece0
gnu: r-gviz: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus 45f1e079a5
gnu: r-scater: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus 06fb533c28
gnu: r-rhdf5lib: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus e4c2155263
gnu: r-biocstyle: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus 46178051d5
gnu: r-enrichplot: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus c5b7ade1c6
gnu: r-biocsingular: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.8.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus 79b67d2f54
gnu: r-diffbind: Update to 3.2.2.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.2.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus 005d3d4058
gnu: r-biostrings: Update to 2.60.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.1.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus 495a9cff6d
gnu: r-biomart: Update to 2.48.1.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.1.
[propagated-inputs]: Add r-xml2.
2021-06-17 14:25:36 +02:00
Ricardo Wurmus 49e8978452
gnu: r-annotationdbi: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.1.
2021-06-17 14:25:36 +02:00
Tobias Geerinckx-Rice f70ff65e0e
gnu: liba52: Note the type of stream.
* gnu/packages/video.scm (liba52)[synopsis, description]: A is for audio.
2021-06-17 11:19:19 +02:00